Ss1.1-Pig4-TMW8030O19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCATTCAGGGGCCCGGCCTTTCGCTTGTGACCAGTGTGGCAAGGCCTTCGCCCGCCGGCC CTCCCTGCGGCTGCATCGCAAGACACACCAGATGCCAACGGCCCCTGCCCCATGCCCCTG CCCCGTGTGTGGGCGGCCCCTGGCCAACCAGGGCTCCCTGCGGAACCACATGCGGCTCCA TACAGGGGAGAAGCCCTTCCTGTGCCCACACTGCGGCCGGGCATTCCGCCAGCGGGGCAA CCTGCGTGGGCACTTGCGGCTGCACACAGGGGAGCGCCCGTACCGCTGCCCGCACTGCGC CGAGGCCTTCCCCCAGCTGCCTGAACTGCGACGCCACCTCATCTCGCACACCGGCGAGGC CCACCTGTGCCCCGTGTGTGGGAAGGCCCTCCGAGACCCGCACACACTGCGCGCCCACGA GCGCCTGCATTCGGGGGAGAGGCCCTTCCCCTGCCCCCAGTGCGGCCGCGCCTACACACT GGCTACCAAGCTGAGGCGCCACCTCAAGTCCCACCTCGCCGACAAGCCCTACCGCTGCCC TACCTGTGGCATGGGCTACACCCTCCCCCAGAGCCTCAAGCGGCACCAGCTCAGTCACCA GCCTGGGGCACCCTCCAGCCCACCCTGTGAGCCGTCTGCCACTTCTGAGCCCACCATGGT GCTCCTGCAGACCGAGCCAGAGCTGCTGGATGCATGCAGCCAACGGGACAGCTCCTCAGC CCAGGATGTCTTCCAGGTCACCATTTCCGAGAGCCAGGATAAGTGCTTTGTGGTCCCGGA GGAGCCAGGCCCTGCCTCCAGCCTGGTGCTCATCCACAAGGACATGGGCTTCAGCGCCTG GGCGGAAGTGGTGGAGGTGGAAACGGGCAGCTGATGCCCCCCTACCCCCGCCCCGAGAGT GCTATATAAAGACTGGTGTTTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCATTCAGGGGCCCGGCCTTTCGCTTGTGACCAGTGTGGCAAGGCCTTCGCCCGCCGGCC CTCCCTGCGGCTGCATCGCAAGACACACCAGATGCCAACGGCCCCTGCCCCATGCCCCTG CCCCGTGTGTGGGCGGCCCCTGGCCAACCAGGGCTCCCTGCGGAACCACATGCGGCTCCA TACAGGGGAGAAGCCCTTCCTGTGCCCACACTGCGGCCGGGCATTCCGCCAGCGGGGCAA CCTGCGTGGGCACTTGCGGCTGCACACAGGGGAGCGCCCGTACCGCTGCCCGCACTGCGC CGAGGCCTTCCCCCAGCTGCCTGAACTGCGACGCCACCTCATCTCGCACACCGGCGAGGC CCACCTGTGCCCCGTGTGTGGGAAGGCCCTCCGAGACCCGCACACACTGCGCGCCCACGA GCGCCTGCATTCGGGGGAGAGGCCCTTCCCCTGCCCCCAGTGCGGCCGCGCCTACACACT GGCTACCAAGCTGAGGCGCCACCTCAAGTCCCACCTCGCCGACAAGCCCTACCGCTGCCC TACCTGTGGCATGGGCTACACCCTCCCCCAGAGCCTCAAGCGGCACCAGCTCAGTCACCA GCCTGGGGCACCCTCCAGCCCACCCTGTGAGCCGTCTGCCACTTCTGAGCCCACCATGGT GCTCCTGCAGACCGAGCCAGAGCTGCTGGATGCATGCAGCCAACGGGACAGCTCCTCAGC CCAGGATGTCTTCCAGGTCACCATTTCCGAGAGCCAGGATAAGTGCTTTGTGGTCCCGGA GGAGCCAGGCCCTGCCTCCAGCCTGGTGCTCATCCACAAGGACATGGGCTTCAGCGCCTG GGCGGAAGTGGTGGAGGTGGAAACGGGCAGCTGATGCCCCCCTACCCCCGCCCCGAGAGT GCTATATAAAGACTGGTGTTTCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 121-486, - strand, RNAz p=0.654056 | |
| 481-680, - strand, RNAz p=0.988534 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 121-486, - strand, RNAz p=0.654056 | |
| 481-680, - strand, RNAz p=0.988534 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 2-888, gnl|bosTau2|chr15 (48468681-48469552) | |
| 2-888, gnl|Hg17|chr11 (46683117-46684007) | |
| 2-888, gnl|Mm7|chr2 (91496560-91495665) | |
| 16-514, gnl|bosTau2|chr14 (433901-434393) | |
| 16-514, gnl|Hg17|chr8 (144429845-144430337) | |
| 157-338, gnl|bosTau2|chr11 (84483707-84483888) | |
| 157-338, gnl|canFam2|chr9 (56630282-56630039) | |
| 157-338, gnl|danRer3|chr13 (11940016-11939770) | |
| 157-338, gnl|dasNov1|scaffold_99119 (4355-4105) | |
| 157-338, gnl|echTel1|scaffold_302330 (601-830) | |
| 157-338, gnl|fr1|chrUn (298618737-298618494) | |
| 157-338, gnl|galGal2|chr17 (4893323-4893080) | |
| 157-338, gnl|hg17|chr9 (130586255-130586498) | |
| 157-338, gnl|Hg17|chr9 (130586277-130586458) | |
| 157-338, gnl|loxAfr1|scaffold_14951 (20331-20574) | |
| 157-338, gnl|mm7|chr2 (31661446-31661689) | |
| 157-338, gnl|Mm7|chr2 (31661468-31661649) | |
| 157-338, gnl|monDom2|scaffold_51 (5940581-5940824) | |
| 157-338, gnl|oryCun1|scaffold_149821 (6302-6535) | |
| 157-338, gnl|panTro1|chr11 (115464968-115465211) | |
| 157-338, gnl|rheMac2|chr15 (8138692-8138449) | |
| 157-338, gnl|rn3|chr3 (10661730-10661973) | |
| 157-338, gnl|tetNig1|chr4 (2620397-2620155) | |
| 157-338, gnl|xenTro1|scaffold_28053 (1202-1468) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-888, gnl|bosTau2|chr15 (48468681-48469552) | |
| 2-888, gnl|Hg17|chr11 (46683117-46684007) | |
| 2-888, gnl|Mm7|chr2 (91496560-91495665) | |
| 16-514, gnl|bosTau2|chr14 (433901-434393) | |
| 16-514, gnl|Hg17|chr8 (144429845-144430337) | |
| 157-338, gnl|bosTau2|chr11 (84483707-84483888) | |
| 157-338, gnl|canFam2|chr9 (56630282-56630039) | |
| 157-338, gnl|danRer3|chr13 (11940016-11939770) | |
| 157-338, gnl|dasNov1|scaffold_99119 (4355-4105) | |
| 157-338, gnl|echTel1|scaffold_302330 (601-830) | |
| 157-338, gnl|fr1|chrUn (298618737-298618494) | |
| 157-338, gnl|galGal2|chr17 (4893323-4893080) | |
| 157-338, gnl|hg17|chr9 (130586255-130586498) | |
| 157-338, gnl|Hg17|chr9 (130586277-130586458) | |
| 157-338, gnl|loxAfr1|scaffold_14951 (20331-20574) | |
| 157-338, gnl|mm7|chr2 (31661446-31661689) | |
| 157-338, gnl|Mm7|chr2 (31661468-31661649) | |
| 157-338, gnl|monDom2|scaffold_51 (5940581-5940824) | |
| 157-338, gnl|oryCun1|scaffold_149821 (6302-6535) | |
| 157-338, gnl|panTro1|chr11 (115464968-115465211) | |
| 157-338, gnl|rheMac2|chr15 (8138692-8138449) | |
| 157-338, gnl|rn3|chr3 (10661730-10661973) | |
| 157-338, gnl|tetNig1|chr4 (2620397-2620155) | |
| 157-338, gnl|xenTro1|scaffold_28053 (1202-1468) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.175346) | |
| nje (0.16592) |