Ss1.1-Pig4-TMW8030P04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCCGTTGCGCCTCAGGCCCCCGAAGCCAGGCTGCCGCCCTTGCGCCCCTCGCCCCGCCG GGCGTCGCGGGCCACCATGGGCCAGGAAGAGGAGCTTCTAAGGATCGCCAGGAAGCTGGA GAAGATGGTGGCCAGGAAGAACACGGAAGGGGCTCTCGACCTTCTGAAGAAGCTGAACAG CTGTGAGATGTCCATCCAGCTACTCCAGACCACCAGGATTGGAGTTGCTGTGAATGGGGT CCGCAAGCATTGCTCTGACAAGGAGGTGGTGTCCTTGGCCAAAGTCCTCATCAGAAACTG GAAGCGGCTGCTGGATTCTCCAGCACCTCCCAAAGGAGAAAAAGGAGAGAAAAGAGTAAA AGCAAAGAAGAAAGAAAAAAGGCTTGACTGTTCCAGTTGGAAGCCAGAGACAAGCCTTTC CCCTCCAAGGAAAAAACGAATGGAAGAGCCCAAAGACAGGAGAGACTCTGTGGACTCCAA GTCTTCAGCCACCTCCTCTCCAAAAAGGCCGTCGATGGAAAGATCGAACAGCAGCAAATC GAAAGTGGAGACTCCCAGAACACCCAGCAGTCCCTCGAGCCCTACCTTTGCCCCTTCAGT CTGCCTCCTGGCGCCCTGCTATCTCACGGGAGACTCTGTCCGGGACAAGTGTGTGGAGAT GCTCTCCGCAGCCCTGAAGGCGGACGATGATTACAAGGACTATGGCATCAACTGTGACAA GATGGCATCAGAAATCGAAGATCATATCTACCAGGAGCTCAAGAGCACAGACATGAAGTA CCGGAACCGCGTGCGCAGCCGAATCAGCAACCTCAAGGACCCCAGGAACCCTGGCCTGAG GCGGAACGTGCTCAGCGGTGCCATCTCTGCTGGGCTCATTGCCAAGATGACAGCAGAGGA AATGGCCAGTGATGAGCTGAGGGAACTGAGAAACGCCATGACCCAAGAGGCCATCCGTGA GCACCAGATGGCCAAGACGGGCGGCACCACCACTGACCTCTTCCAGTGCAGCAAATGCAA GAAGAAGAACTGCACCTATAACCAGGTGCAGACACGCAGTGCTGATGAGCCCATGACTAC CTTTGTTTTATGCAATGAATGTGGCAATCGCTGGAAGTTCTGCTGATAGAACCACCAGCC AGAATTTCAATGAACAAGGTGAGGAAGAACAAAGAGAAAGCACTAAGCCGTCGTGACTGG AGAAAAATAAATATTAAAATGAAGAAAAATGCTGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCCGTTGCGCCTCAGGCCCCCGAAGCCAGGCTGCCGCCCTTGCGCCCCTCGCCCCGCCG GGCGTCGCGGGCCACCATGGGCCAGGAAGAGGAGCTTCTAAGGATCGCCAGGAAGCTGGA GAAGATGGTGGCCAGGAAGAACACGGAAGGGGCTCTCGACCTTCTGAAGAAGCTGAACAG CTGTGAGATGTCCATCCAGCTACTCCAGACCACCAGGATTGGAGTTGCTGTGAATGGGGT CCGCAAGCATTGCTCTGACAAGGAGGTGGTGTCCTTGGCCAAAGTCCTCATCAGAAACTG GAAGCGGCTGCTGGATTCTCCAGCACCTCCCAAAGGAGAAAAAGGAGAGAAAAGAGTAAA AGCAAAGAAGAAAGAAAAAAGGCTTGACTGTTCCAGTTGGAAGCCAGAGACAAGCCTTTC CCCTCCAAGGAAAAAACGAATGGAAGAGCCCAAAGACAGGAGAGACTCTGTGGACTCCAA GTCTTCAGCCACCTCCTCTCCAAAAAGGCCGTCGATGGAAAGATCGAACAGCAGCAAATC GAAAGTGGAGACTCCCAGAACACCCAGCAGTCCCTCGAGCCCTACCTTTGCCCCTTCAGT CTGCCTCCTGGCGCCCTGCTATCTCACGGGAGACTCTGTCCGGGACAAGTGTGTGGAGAT GCTCTCCGCAGCCCTGAAGGCGGACGATGATTACAAGGACTATGGCATCAACTGTGACAA GATGGCATCAGAAATCGAAGATCATATCTACCAGGAGCTCAAGAGCACAGACATGAAGTA CCGGAACCGCGTGCGCAGCCGAATCAGCAACCTCAAGGACCCCAGGAACCCTGGCCTGAG GCGGAACGTGCTCAGCGGTGCCATCTCTGCTGGGCTCATTGCCAAGATGACAGCAGAGGA AATGGCCAGTGATGAGCTGAGGGAACTGAGAAACGCCATGACCCAAGAGGCCATCCGTGA GCACCAGATGGCCAAGACGGGCGGCACCACCACTGACCTCTTCCAGTGCAGCAAATGCAA GAAGAAGAACTGCACCTATAACCAGGTGCAGACACGCAGTGCTGATGAGCCCATGACTAC CTTTGTTTTATGCAATGAATGTGGCAATCGCTGGAAGTTCTGCTGATAGAACCACCAGCC AGAATTTCAATGAACAAGGTGAGGAAGAACAAAGAGAAAGCACTAAGCCGTCGTGACTGG AGAAAAATAAATATTAAAATGAAGAAAAATGCTGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 897-1047, - strand, RNAz p=0.996281 | |
| 949-1047, - strand, RNAz p=0.94055 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 897-1047, - strand, RNAz p=0.996281 | |
| 949-1047, - strand, RNAz p=0.94055 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 6-146, gnl|bosTau2|chr2 (82739487-82739630) | |
| 6-146, gnl|Hg17|chr1 (23496501-23496363) | |
| 6-146, gnl|Mm7|chr4 (135626434-135626555) | |
| 314-460, gnl|bosTau2|chr2 (82747684-82747830) | |
| 314-460, gnl|canFam2|chr2 (78898382-78898213) | |
| 314-460, gnl|echTel1|scaffold_291348 (49578-49750) | |
| 314-460, gnl|hg17|chr1 (23489021-23489190) | |
| 314-460, gnl|Hg17|chr1 (23489190-23489047) | |
| 314-460, gnl|loxAfr1|scaffold_14717 (34874-35058) | |
| 314-460, gnl|mm7|chr4 (135633758-135633588) | |
| 314-460, gnl|Mm7|chr4 (135633586-135633726) | |
| 314-460, gnl|oryCun1|scaffold_86063 (4983-5155) | |
| 314-460, gnl|panTro1|chr1 (23864286-23864455) | |
| 314-460, gnl|rheMac2|chr1 (26020014-26020183) | |
| 314-460, gnl|rn3|chr5 (155000030-154999860) | |
| 521-690, gnl|bosTau2|chr2 (82770116-82770285) | |
| 521-690, gnl|canFam2|chr2 (78919382-78919184) | |
| 521-690, gnl|danRer3|chr23 (4584421-4584255) | |
| 521-690, gnl|dasNov1|scaffold_126471 (347-209) | |
| 521-690, gnl|echTel1|scaffold_183333 (1007-812) | |
| 521-690, gnl|fr1|chrUn (43886213-43886060) | |
| 521-690, gnl|galGal2|chrUn (48889111-48889279) | |
| 521-690, gnl|hg17|chr1 (23469587-23469784) | |
| 521-690, gnl|Hg17|chr1 (23469756-23469587) | |
| 521-690, gnl|loxAfr1|scaffold_1926 (84132-84330) | |
| 521-690, gnl|mm7|chr4 (135643053-135642856) | |
| 521-690, gnl|Mm7|chr4 (135642882-135643051) | |
| 521-690, gnl|monDom2|scaffold_90 (5496317-5496509) | |
| 521-690, gnl|oryCun1|scaffold_102315 (2905-2748) | |
| 521-690, gnl|panTro1|chr1 (23844538-23844735) | |
| 521-690, gnl|rheMac2|chr1 (26001074-26001271) | |
| 521-690, gnl|rn3|chr5 (155010808-155010610) | |
| 521-690, gnl|tetNig1|chr8 (5540465-5540312) | |
| 897-1047, gnl|bosTau2|chr13 (35065181-35065031) | |
| 897-1047, gnl|canFam2|chr24 (50560371-50560528) | |
| 897-1047, gnl|danRer3|chr2 (23052497-23052346) | |
| 897-1047, gnl|dasNov1|scaffold_126471 (1070-1229) | |
| 897-1047, gnl|echTel1|scaffold_292335 (34014-33847) | |
| 897-1047, gnl|fr1|chrUn (43886942-43887100) | |
| 897-1047, gnl|galGal2|chr20 (9068938-9068781) | |
| 897-1047, gnl|hg17|chr20 (62172284-62172458) | |
| 897-1047, gnl|Hg17|chr20 (62172284-62172434) | |
| 897-1047, gnl|loxAfr1|scaffold_62772 (34058-33890) | |
| 897-1047, gnl|mm7|chr2 (182187737-182187895) | |
| 897-1047, gnl|Mm7|chr2 (182187737-182187887) | |
| 897-1047, gnl|monDom2|scaffold_1 (185082443-185082597) | |
| 897-1047, gnl|oryCun1|scaffold_170729 (7623-7755) | |
| 897-1047, gnl|panTro1|chr21_random (20063975-20063801) | |
| 897-1047, gnl|rheMac2|chr10 (272362-272189) | |
| 897-1047, gnl|rn3|chr3 (170743799-170743975) | |
| 897-1047, gnl|tetNig1|chrUn_random (16843087-16843238) | |
| 897-1047, gnl|xenTro1|scaffold_8 (1956121-1955967) | |
| 1116-1236, gnl|bosTau2|chr2 (82785504-82785626) | |
| 1116-1236, gnl|Hg17|chr1 (23453275-23453163) | |
| 1116-1236, gnl|Mm7|chr4 (135653215-135653347) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-146, gnl|bosTau2|chr2 (82739487-82739630) | |
| 6-146, gnl|Hg17|chr1 (23496501-23496363) | |
| 6-146, gnl|Mm7|chr4 (135626434-135626555) | |
| 314-460, gnl|bosTau2|chr2 (82747684-82747830) | |
| 314-460, gnl|canFam2|chr2 (78898382-78898213) | |
| 314-460, gnl|echTel1|scaffold_291348 (49578-49750) | |
| 314-460, gnl|hg17|chr1 (23489021-23489190) | |
| 314-460, gnl|Hg17|chr1 (23489190-23489047) | |
| 314-460, gnl|loxAfr1|scaffold_14717 (34874-35058) | |
| 314-460, gnl|mm7|chr4 (135633758-135633588) | |
| 314-460, gnl|Mm7|chr4 (135633586-135633726) | |
| 314-460, gnl|oryCun1|scaffold_86063 (4983-5155) | |
| 314-460, gnl|panTro1|chr1 (23864286-23864455) | |
| 314-460, gnl|rheMac2|chr1 (26020014-26020183) | |
| 314-460, gnl|rn3|chr5 (155000030-154999860) | |
| 521-690, gnl|bosTau2|chr2 (82770116-82770285) | |
| 521-690, gnl|canFam2|chr2 (78919382-78919184) | |
| 521-690, gnl|danRer3|chr23 (4584421-4584255) | |
| 521-690, gnl|dasNov1|scaffold_126471 (347-209) | |
| 521-690, gnl|echTel1|scaffold_183333 (1007-812) | |
| 521-690, gnl|fr1|chrUn (43886213-43886060) | |
| 521-690, gnl|galGal2|chrUn (48889111-48889279) | |
| 521-690, gnl|hg17|chr1 (23469587-23469784) | |
| 521-690, gnl|Hg17|chr1 (23469756-23469587) | |
| 521-690, gnl|loxAfr1|scaffold_1926 (84132-84330) | |
| 521-690, gnl|mm7|chr4 (135643053-135642856) | |
| 521-690, gnl|Mm7|chr4 (135642882-135643051) | |
| 521-690, gnl|monDom2|scaffold_90 (5496317-5496509) | |
| 521-690, gnl|oryCun1|scaffold_102315 (2905-2748) | |
| 521-690, gnl|panTro1|chr1 (23844538-23844735) | |
| 521-690, gnl|rheMac2|chr1 (26001074-26001271) | |
| 521-690, gnl|rn3|chr5 (155010808-155010610) | |
| 521-690, gnl|tetNig1|chr8 (5540465-5540312) | |
| 897-1047, gnl|bosTau2|chr13 (35065181-35065031) | |
| 897-1047, gnl|canFam2|chr24 (50560371-50560528) | |
| 897-1047, gnl|danRer3|chr2 (23052497-23052346) | |
| 897-1047, gnl|dasNov1|scaffold_126471 (1070-1229) | |
| 897-1047, gnl|echTel1|scaffold_292335 (34014-33847) | |
| 897-1047, gnl|fr1|chrUn (43886942-43887100) | |
| 897-1047, gnl|galGal2|chr20 (9068938-9068781) | |
| 897-1047, gnl|hg17|chr20 (62172284-62172458) | |
| 897-1047, gnl|Hg17|chr20 (62172284-62172434) | |
| 897-1047, gnl|loxAfr1|scaffold_62772 (34058-33890) | |
| 897-1047, gnl|mm7|chr2 (182187737-182187895) | |
| 897-1047, gnl|Mm7|chr2 (182187737-182187887) | |
| 897-1047, gnl|monDom2|scaffold_1 (185082443-185082597) | |
| 897-1047, gnl|oryCun1|scaffold_170729 (7623-7755) | |
| 897-1047, gnl|panTro1|chr21_random (20063975-20063801) | |
| 897-1047, gnl|rheMac2|chr10 (272362-272189) | |
| 897-1047, gnl|rn3|chr3 (170743799-170743975) | |
| 897-1047, gnl|tetNig1|chrUn_random (16843087-16843238) | |
| 897-1047, gnl|xenTro1|scaffold_8 (1956121-1955967) | |
| 1116-1236, gnl|bosTau2|chr2 (82785504-82785626) | |
| 1116-1236, gnl|Hg17|chr1 (23453275-23453163) | |
| 1116-1236, gnl|Mm7|chr4 (135653215-135653347) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.42061) |