Ss1.1-Pig4-TMW8030P18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAACTTGGCGGGCCGGATGAGGGCCGCCGGGCGGTGGAGGGCTACCTCGCCCCTTCCGG ACACCCGGCTTTTGGCCGCCTGCAGGTCCAGGTCTCGGCTCTCCTCCGGCTCCTTCTCCG CCCTCATGGAGGGCGCCCGGGGACAGGGGCTGGAGGCGGTGGAGGTGTGTTCGCTGTCGC CGCCGCTGAGCTGCAGCAATTCCACCTTGTCGCTGTTGTCTCCCCTCGGCTACCAGAGCT TCTCGTTGGACGACGACGATGGTGACGGAGAGGAGGAGGAGGAAGATGTGGACGAAGATG CTCATGACTCAGAGGACCAGGTGGAGAGCCTGAGAGGAATGGAGTTACAGGGGTGCGCCA GTGTGGTTGGATCTGAAGATACCCAAGAAGAACAGAAACAGGTGTGCTTACCAGAGAGCA GCCTGACACCATGGGAAGTGTGGTTTGTTGGCAAAGAAAAAGTAGAACGTGACCGTCTGC AGCAGAAAGCTCGAGAGGAATTAAATCAACAGCTAGAAAAAAAGAAAGAAGTGGAAGAAC GTGAAAAGAGAAAGATAATTGCTGAAGAAAAGCACAAGGAATGGGTTCAGAAAAAGAATG AACAGAAAAGAAAAGAAAGGGAACAAAAAATTAATAAGGAAATGGAGGAAAAAGCAGCAA AGGAACTGGAGAAAGAACATTTGCAAGAAAAAGCAAAAGAAAAATATCAAGAATGGTTAA AGAAAAAAAATGCTGAAGAATGTGAGAAGAAGAAGAAAGAAAAGGAAAAAGAAAAACAGC GGCAAGCTGAATTACAGGAAAAAAAGGAAATAGCAGAAAAAAAGTTTAAGGAATGGTTGG AAAATGCAAAAAATAAACCTCGTCCAGCTGCAAAGAGCTATGGTTATGCCAATGGAAAAC TTACAGGTTTTTACAGTGGAAATTCTTATCCAGAACCAGCTTTTTATAACCCAATTCCAT GGAAGCCAATCCCTGTGCCTCCTTCCAAAGAAGCAAAGGATCTATCAGGAAAGAAGACTA AAAGGCCTGTGATAAGCCAGCCACACAGGTCATCCTCTCTGGTAATGCATAAAGCCAGAA GTAATCTTTGCCTTGGAACTCTGTGCAGAATACAAAGATAGTGGGTGTGGGAAATTACAT GCTTTGGTTTGGAGCTATTTCATTTTAAAATCAGAAATTGTTTTTTACTCCTTAGTCAGT AGCTAAACATTTGACGTGATTATTGACAAGTTCAAATTTTTGCATTTGTATATGGAGTCC TTAAAGTTAATTAATTAATTTTATAAATTTTCATTTTTATAAATGCTTGTAGGTTGATCT TGGCATATTTATTGTTTTCCAGGATAAGTGACTGAATAATCTAACAATTGTGTTTGTACT TAGCTTTTATTAAAACTACCATCTAATAATACCAATAAAACCAGTAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAACTTGGCGGGCCGGATGAGGGCCGCCGGGCGGTGGAGGGCTACCTCGCCCCTTCCGG ACACCCGGCTTTTGGCCGCCTGCAGGTCCAGGTCTCGGCTCTCCTCCGGCTCCTTCTCCG CCCTCATGGAGGGCGCCCGGGGACAGGGGCTGGAGGCGGTGGAGGTGTGTTCGCTGTCGC CGCCGCTGAGCTGCAGCAATTCCACCTTGTCGCTGTTGTCTCCCCTCGGCTACCAGAGCT TCTCGTTGGACGACGACGATGGTGACGGAGAGGAGGAGGAGGAAGATGTGGACGAAGATG CTCATGACTCAGAGGACCAGGTGGAGAGCCTGAGAGGAATGGAGTTACAGGGGTGCGCCA GTGTGGTTGGATCTGAAGATACCCAAGAAGAACAGAAACAGGTGTGCTTACCAGAGAGCA GCCTGACACCATGGGAAGTGTGGTTTGTTGGCAAAGAAAAAGTAGAACGTGACCGTCTGC AGCAGAAAGCTCGAGAGGAATTAAATCAACAGCTAGAAAAAAAGAAAGAAGTGGAAGAAC GTGAAAAGAGAAAGATAATTGCTGAAGAAAAGCACAAGGAATGGGTTCAGAAAAAGAATG AACAGAAAAGAAAAGAAAGGGAACAAAAAATTAATAAGGAAATGGAGGAAAAAGCAGCAA AGGAACTGGAGAAAGAACATTTGCAAGAAAAAGCAAAAGAAAAATATCAAGAATGGTTAA AGAAAAAAAATGCTGAAGAATGTGAGAAGAAGAAGAAAGAAAAGGAAAAAGAAAAACAGC GGCAAGCTGAATTACAGGAAAAAAAGGAAATAGCAGAAAAAAAGTTTAAGGAATGGTTGG AAAATGCAAAAAATAAACCTCGTCCAGCTGCAAAGAGCTATGGTTATGCCAATGGAAAAC TTACAGGTTTTTACAGTGGAAATTCTTATCCAGAACCAGCTTTTTATAACCCAATTCCAT GGAAGCCAATCCCTGTGCCTCCTTCCAAAGAAGCAAAGGATCTATCAGGAAAGAAGACTA AAAGGCCTGTGATAAGCCAGCCACACAGGTCATCCTCTCTGGTAATGCATAAAGCCAGAA GTAATCTTTGCCTTGGAACTCTGTGCAGAATACAAAGATAGTGGGTGTGGGAAATTACAT GCTTTGGTTTGGAGCTATTTCATTTTAAAATCAGAAATTGTTTTTTACTCCTTAGTCAGT AGCTAAACATTTGACGTGATTATTGACAAGTTCAAATTTTTGCATTTGTATATGGAGTCC TTAAAGTTAATTAATTAATTTTATAAATTTTCATTTTTATAAATGCTTGTAGGTTGATCT TGGCATATTTATTGTTTTCCAGGATAAGTGACTGAATAATCTAACAATTGTGTTTGTACT TAGCTTTTATTAAAACTACCATCTAATAATACCAATAAAACCAGTAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-119, + strand, RNAz p=0.996976 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-119, + strand, RNAz p=0.996976 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 1-361, gnl|bosTau2|chr15 (36608152-36608506) | |
| 1-361, gnl|canFam2|chr21 (51139984-51140269) | |
| 1-361, gnl|dasNov1|scaffold_118441 (4753-4447) | |
| 1-361, gnl|echTel1|scaffold_312438 (59853-59511) | |
| 1-361, gnl|hg17|chr11 (27340960-27341329) | |
| 1-361, gnl|Hg17|chr11 (27341334-27340959) | |
| 1-361, gnl|loxAfr1|scaffold_49639 (4348-3995) | |
| 1-361, gnl|mm7|chr2 (109869002-109868645) | |
| 1-361, gnl|Mm7|chr2 (109868638-109869001) | |
| 1-361, gnl|oryCun1|scaffold_212415 (200411-200054) | |
| 1-361, gnl|panTro1|chr9 (27637079-27637430) | |
| 1-361, gnl|rheMac2|chr14 (44443587-44443236) | |
| 1-361, gnl|rn3|chr3 (95372063-95371706) | |
| 365-498, gnl|bosTau2|chr15 (36613840-36613973) | |
| 365-498, gnl|canFam2|chr21 (51135362-51135066) | |
| 365-498, gnl|canFam2|chr21 (51135073-51135357) | |
| 365-498, gnl|echTel1|scaffold_280903 (38911-38521) | |
| 365-498, gnl|echTel1|scaffold_280903 (38528-38823) | |
| 365-498, gnl|galGal2|chr3 (44889752-44889437) | |
| 365-498, gnl|hg17|chr11 (27335522-27335803) | |
| 365-498, gnl|Hg17|chr11 (27335658-27335525) | |
| 365-498, gnl|hg17|chr13 (68446841-68447132) | |
| 365-498, gnl|loxAfr1|scaffold_28985 (38702-38394) | |
| 365-498, gnl|loxAfr1|scaffold_28985 (38401-38697) | |
| 365-498, gnl|mm7|chr2 (109872556-109872809) | |
| 365-498, gnl|mm7|chr2 (109872807-109872556) | |
| 365-498, gnl|Mm7|chr2 (109872675-109872802) | |
| 365-498, gnl|monDom2|scaffold_10 (72732670-72732947) | |
| 365-498, gnl|oryCun1|scaffold_212415 (207669-207957) | |
| 365-498, gnl|oryCun1|scaffold_212415 (207950-207674) | |
| 365-498, gnl|panTro1|chr14 (50862534-50862825) | |
| 365-498, gnl|panTro1|chr9 (27632051-27632332) | |
| 365-498, gnl|rheMac2|chr14 (44448887-44448606) | |
| 365-498, gnl|rheMac2|chr17 (49248920-49249211) | |
| 365-498, gnl|rn3|chr3 (95375489-95375746) | |
| 365-498, gnl|rn3|chr3 (95375740-95375489) | |
| 604-765, gnl|bosTau2|chr15 (36650184-36650345) | |
| 604-765, gnl|canFam2|chr21 (51120654-51120840) | |
| 604-765, gnl|dasNov1|scaffold_9832 (7498-7684) | |
| 604-765, gnl|hg17|chr11 (27319479-27319665) | |
| 604-765, gnl|Hg17|chr11 (27319675-27319514) | |
| 604-765, gnl|loxAfr1|scaffold_148255 (436-622) | |
| 604-765, gnl|mm7|chr2 (109891557-109891371) | |
| 604-765, gnl|Mm7|chr2 (109891359-109891520) | |
| 604-765, gnl|monDom2|scaffold_95 (1368011-1368223) | |
| 604-765, gnl|panTro1|chr9 (27615677-27615864) | |
| 604-765, gnl|rheMac2|chr14 (44464851-44464665) | |
| 604-765, gnl|rn3|chr3 (95401245-95401059) | |
| 896-1421, gnl|bosTau2|chr15 (36652465-36652977) | |
| 896-1421, gnl|Hg17|chr11 (27317169-27316648) | |
| 896-1421, gnl|Mm7|chr2 (109894964-109895438) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-361, gnl|bosTau2|chr15 (36608152-36608506) | |
| 1-361, gnl|canFam2|chr21 (51139984-51140269) | |
| 1-361, gnl|dasNov1|scaffold_118441 (4753-4447) | |
| 1-361, gnl|echTel1|scaffold_312438 (59853-59511) | |
| 1-361, gnl|hg17|chr11 (27340960-27341329) | |
| 1-361, gnl|Hg17|chr11 (27341334-27340959) | |
| 1-361, gnl|loxAfr1|scaffold_49639 (4348-3995) | |
| 1-361, gnl|mm7|chr2 (109869002-109868645) | |
| 1-361, gnl|Mm7|chr2 (109868638-109869001) | |
| 1-361, gnl|oryCun1|scaffold_212415 (200411-200054) | |
| 1-361, gnl|panTro1|chr9 (27637079-27637430) | |
| 1-361, gnl|rheMac2|chr14 (44443587-44443236) | |
| 1-361, gnl|rn3|chr3 (95372063-95371706) | |
| 365-498, gnl|bosTau2|chr15 (36613840-36613973) | |
| 365-498, gnl|canFam2|chr21 (51135362-51135066) | |
| 365-498, gnl|canFam2|chr21 (51135073-51135357) | |
| 365-498, gnl|echTel1|scaffold_280903 (38911-38521) | |
| 365-498, gnl|echTel1|scaffold_280903 (38528-38823) | |
| 365-498, gnl|galGal2|chr3 (44889752-44889437) | |
| 365-498, gnl|hg17|chr11 (27335522-27335803) | |
| 365-498, gnl|Hg17|chr11 (27335658-27335525) | |
| 365-498, gnl|hg17|chr13 (68446841-68447132) | |
| 365-498, gnl|loxAfr1|scaffold_28985 (38702-38394) | |
| 365-498, gnl|loxAfr1|scaffold_28985 (38401-38697) | |
| 365-498, gnl|mm7|chr2 (109872556-109872809) | |
| 365-498, gnl|mm7|chr2 (109872807-109872556) | |
| 365-498, gnl|Mm7|chr2 (109872675-109872802) | |
| 365-498, gnl|monDom2|scaffold_10 (72732670-72732947) | |
| 365-498, gnl|oryCun1|scaffold_212415 (207669-207957) | |
| 365-498, gnl|oryCun1|scaffold_212415 (207950-207674) | |
| 365-498, gnl|panTro1|chr14 (50862534-50862825) | |
| 365-498, gnl|panTro1|chr9 (27632051-27632332) | |
| 365-498, gnl|rheMac2|chr14 (44448887-44448606) | |
| 365-498, gnl|rheMac2|chr17 (49248920-49249211) | |
| 365-498, gnl|rn3|chr3 (95375489-95375746) | |
| 365-498, gnl|rn3|chr3 (95375740-95375489) | |
| 604-765, gnl|bosTau2|chr15 (36650184-36650345) | |
| 604-765, gnl|canFam2|chr21 (51120654-51120840) | |
| 604-765, gnl|dasNov1|scaffold_9832 (7498-7684) | |
| 604-765, gnl|hg17|chr11 (27319479-27319665) | |
| 604-765, gnl|Hg17|chr11 (27319675-27319514) | |
| 604-765, gnl|loxAfr1|scaffold_148255 (436-622) | |
| 604-765, gnl|mm7|chr2 (109891557-109891371) | |
| 604-765, gnl|Mm7|chr2 (109891359-109891520) | |
| 604-765, gnl|monDom2|scaffold_95 (1368011-1368223) | |
| 604-765, gnl|panTro1|chr9 (27615677-27615864) | |
| 604-765, gnl|rheMac2|chr14 (44464851-44464665) | |
| 604-765, gnl|rn3|chr3 (95401245-95401059) | |
| 896-1421, gnl|bosTau2|chr15 (36652465-36652977) | |
| 896-1421, gnl|Hg17|chr11 (27317169-27316648) | |
| 896-1421, gnl|Mm7|chr2 (109894964-109895438) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| ret (0.3862) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| rec (0.17307) | |
| eye (0.170503) | |
| cki (0.165235) | |
| cje (0.165235) | |
| pty (0.142714) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| spc (0.113366) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (0.3862) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| rec (0.17307) | |
| eye (0.170503) | |
| cki (0.165235) | |
| cje (0.165235) | |
| pty (0.142714) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| spc (0.113366) |