Non-Coding RNA Search

Ss1.1-Pig4-TMW8030P22.3

Sequence:


               
               AATAAAAATAACTTCTCGCTGAAAGCAACTCACGCCTAACTGATGAATACAATCTGCTCC
GCTTTGAACTTGGTATCGTACTTACGATCTTCTTGAAAGTATGTTTGCAACAATCCCAAG
ATCCTTTCTACTTCTTTTTCTGTTGCTTCTTGATGAGATTGTTCCATTCTTTTTAACTGA
AAATATAAAGTCATTATCAAGCAGACTGACCTACTTGCCTAAACCGTTTCTGCTCTCTTC
CGTGGCCAAACTCCTCTAAATATCCTTTACGGGGGATTGCTGGCAGTTTTTATCCCCGTC
TTAAAGCTTACAGTTAAAATATTTTTTTCTAGTTTTCTGTAACATTTTCATGTTAATTTC
CTAATAGGGGAGTGACATGACCATCCACCATTTCCCAGGCTGAACATAAAATACCCAAAT
ACAAAAGGGACAGCTGAGAACCGTGGTTTTCTACCTGCAGTGATTTCTGCCTCCAGGGAA
CATCTGCCAACATGTGGATGTCACACTCGAGGGGCTGCGAGGATGCTACTAGCATCGAGT
GGGAAGAGGCCAAGGCTGCTGCTGAACAAACAGCCTACAATACACAGGACAGCCTCTCAC
AACCAAGACTGACCCAGCCCCAAAAGTCAGTGCTGATACAAGAAACCCTGGCTTAGGCGA
ACTAATCCAAACAACAGAAATGAGTGAAAAGGAAGACAAGCGGTCAATCCAATAACGTGT
TTAAAGGCTGAAGTAAATCAAACGCAATTCAGATATTACATGATTACTTATGGGTGACAG
AACCTGACTCCAGCCCCTAAAGCTTCGAAAAGATGGCCACATTGCATGTACATGATATTA
ATGGCTATTTTAACTTTAGGTGTTTTAAAAAGCAACATTCGAAAAACAAAACAAAACCAA
CCAACCTCGGCAGGCATTGCCTGCTTCTCTTCTATCATACGAGCTTTCTTTGGGCGATCG
ATTCGTGGCTTTGGCACAGGGCCCTCTCCTTGGATTGAACCCAACCTAATGAAAAATACG
CTTTCATGCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAAAAATAACTTCTCGCTGAAAGCAACTCACGCCTAACTGATGAATACAATCTGCTCC
GCTTTGAACTTGGTATCGTACTTACGATCTTCTTGAAAGTATGTTTGCAACAATCCCAAG
ATCCTTTCTACTTCTTTTTCTGTTGCTTCTTGATGAGATTGTTCCATTCTTTTTAACTGA
AAATATAAAGTCATTATCAAGCAGACTGACCTACTTGCCTAAACCGTTTCTGCTCTCTTC
CGTGGCCAAACTCCTCTAAATATCCTTTACGGGGGATTGCTGGCAGTTTTTATCCCCGTC
TTAAAGCTTACAGTTAAAATATTTTTTTCTAGTTTTCTGTAACATTTTCATGTTAATTTC
CTAATAGGGGAGTGACATGACCATCCACCATTTCCCAGGCTGAACATAAAATACCCAAAT
ACAAAAGGGACAGCTGAGAACCGTGGTTTTCTACCTGCAGTGATTTCTGCCTCCAGGGAA
CATCTGCCAACATGTGGATGTCACACTCGAGGGGCTGCGAGGATGCTACTAGCATCGAGT
GGGAAGAGGCCAAGGCTGCTGCTGAACAAACAGCCTACAATACACAGGACAGCCTCTCAC
AACCAAGACTGACCCAGCCCCAAAAGTCAGTGCTGATACAAGAAACCCTGGCTTAGGCGA
ACTAATCCAAACAACAGAAATGAGTGAAAAGGAAGACAAGCGGTCAATCCAATAACGTGT
TTAAAGGCTGAAGTAAATCAAACGCAATTCAGATATTACATGATTACTTATGGGTGACAG
AACCTGACTCCAGCCCCTAAAGCTTCGAAAAGATGGCCACATTGCATGTACATGATATTA
ATGGCTATTTTAACTTTAGGTGTTTTAAAAAGCAACATTCGAAAAACAAAACAAAACCAA
CCAACCTCGGCAGGCATTGCCTGCTTCTCTTCTATCATACGAGCTTTCTTTGGGCGATCG
ATTCGTGGCTTTGGCACAGGGCCCTCTCCTTGGATTGAACCCAACCTAATGAAAAATACG
CTTTCATGCCCA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-433, gnl|bosTau2|chr26 (28497905-28497469)
               

               
               1-433, gnl|Hg17|chr10 (123712678-123714353)
               

               
               1-433, gnl|Mm7|chr7 (126703430-126703868)
               


               
               516-1028, gnl|bosTau2|chr26 (28497359-28496860)
               

               
               516-1028, gnl|Hg17|chr10 (123714449-123714913)
               

               
               516-1028, gnl|Mm7|chr7 (126703948-126704479)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-433, gnl|bosTau2|chr26 (28497905-28497469)
               

               
               1-433, gnl|Hg17|chr10 (123712678-123714353)
               

               
               1-433, gnl|Mm7|chr7 (126703430-126703868)
               


               
               516-1028, gnl|bosTau2|chr26 (28497359-28496860)
               

               
               516-1028, gnl|Hg17|chr10 (123714449-123714913)
               

               
               516-1028, gnl|Mm7|chr7 (126703948-126704479)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	1-433, gnl\|bosTau2\|chr26 (28497905-28497469)
	1-433, gnl\|Hg17\|chr10 (123712678-123714353)
	1-433, gnl\|Mm7\|chr7 (126703430-126703868)

	516-1028, gnl\|bosTau2\|chr26 (28497359-28496860)
	516-1028, gnl\|Hg17\|chr10 (123714449-123714913)
	516-1028, gnl\|Mm7\|chr7 (126703948-126704479)