Ss1.1-Pig4-TMW8031A04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTGCAGTTTCCGCCATCGCCCCTTCCACCTCTCGGCAGTTCGAAGTGAAGCTGTTGTC ATTTCTGGAAAGAAGCTTGCTGAGCAGATCAAGCAGGAAGTGCGGCAGGAGGTGGAGGAG TGGGTGGCATCAGGCAACAAGCGACCACACCTGAGTGTGGTCCTGGTTGGTGAGAACCCT GCAAGTCACTCTTATGTCCTCAACAAAACCAGAACAGCTGCCGATGTGGGAATCAGCAGT GAGACAATTATGAAACCAGCTTCAATTTCAGAGGAAGAACTGTTGAGTTTAATCAGTAAA CTAAACAATGATGATAATGTAGACGGCCTCCTTGTTCAGCTGCCTCTTCCAGAGCACATT GATGAGAGAAGGATCTGCAATGCTGTTTCTCCAGACAAGGATGTCGATGGCTTTCATGTA ATTAACGTCGGGCGAATGTGCTTGGACCAGAATTCCATGTTACCGGCTACTCCATGGGGT GTGTGGGAAATAATTAAGCGAACTGGCATTCCAACCCTAGGGAAGAATGTGGTTGTGGCT GGAAGATCAAAAAACGTTGGCATGCCCATTGCAATGTTATTGCACACAGATGGGGCGCAT GAGCGACCCGGAGGTGATGCCACTGTCACAATATCTCACCGATACACTCCCAGGGAGCAG CTGAAGAAACACACCGCTCTTGCAGATATTGTGATCTCTGCTGCAGGCATTCCAAATCTG ATTACAGAAGATATGATCAAGGAAGGAGCAGCTGTCATTGATGTAGGAATAAATAGAATT CAAGATCCCATAACTGCTAAACCCAAGTTGGTTGGAGATGTGGATTTTGAAGGCGTCAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTGCAGTTTCCGCCATCGCCCCTTCCACCTCTCGGCAGTTCGAAGTGAAGCTGTTGTC ATTTCTGGAAAGAAGCTTGCTGAGCAGATCAAGCAGGAAGTGCGGCAGGAGGTGGAGGAG TGGGTGGCATCAGGCAACAAGCGACCACACCTGAGTGTGGTCCTGGTTGGTGAGAACCCT GCAAGTCACTCTTATGTCCTCAACAAAACCAGAACAGCTGCCGATGTGGGAATCAGCAGT GAGACAATTATGAAACCAGCTTCAATTTCAGAGGAAGAACTGTTGAGTTTAATCAGTAAA CTAAACAATGATGATAATGTAGACGGCCTCCTTGTTCAGCTGCCTCTTCCAGAGCACATT GATGAGAGAAGGATCTGCAATGCTGTTTCTCCAGACAAGGATGTCGATGGCTTTCATGTA ATTAACGTCGGGCGAATGTGCTTGGACCAGAATTCCATGTTACCGGCTACTCCATGGGGT GTGTGGGAAATAATTAAGCGAACTGGCATTCCAACCCTAGGGAAGAATGTGGTTGTGGCT GGAAGATCAAAAAACGTTGGCATGCCCATTGCAATGTTATTGCACACAGATGGGGCGCAT GAGCGACCCGGAGGTGATGCCACTGTCACAATATCTCACCGATACACTCCCAGGGAGCAG CTGAAGAAACACACCGCTCTTGCAGATATTGTGATCTCTGCTGCAGGCATTCCAAATCTG ATTACAGAAGATATGATCAAGGAAGGAGCAGCTGTCATTGATGTAGGAATAAATAGAATT CAAGATCCCATAACTGCTAAACCCAAGTTGGTTGGAGATGTGGATTTTGAAGGCGTCAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 716-833, + strand, RNAz p=0.564594 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 716-833, + strand, RNAz p=0.564594 |
| Aligned organism(s): 102 entry(ies) | More info |
| Aligned organism(s): 102 entry(ies) | Help | Less info |
| 44-233, gnl|bosTau2|chr11 (8172735-8172546) | |
| 44-233, gnl|canFam2|chr17 (51960745-51960560) | |
| 44-233, gnl|canFam2|chr17 (51960745-51960547) | |
| 44-233, gnl|canFam2|chr17 (51960558-51960745) | |
| 44-233, gnl|canFam2|chr17 (51960566-51960744) | |
| 44-233, gnl|danRer3|chrUn (71262304-71262485) | |
| 44-233, gnl|danRer3|chrUn (71262300-71262498) | |
| 44-233, gnl|danRer3|chrUn (71262487-71262299) | |
| 44-233, gnl|danRer3|chrUn (71262485-71262326) | |
| 44-233, gnl|dasNov1|scaffold_24081 (4-169) | |
| 44-233, gnl|dasNov1|scaffold_24081 (4-182) | |
| 44-233, gnl|dasNov1|scaffold_2731 (13496-13684) | |
| 44-233, gnl|dasNov1|scaffold_2731 (13498-13683) | |
| 44-233, gnl|echTel1|scaffold_211240 (3725-3540) | |
| 44-233, gnl|echTel1|scaffold_211240 (3540-3725) | |
| 44-233, gnl|echTel1|scaffold_307762 (6856-6673) | |
| 44-233, gnl|echTel1|scaffold_307762 (6675-6862) | |
| 44-233, gnl|fr1|chrUn (72526131-72525950) | |
| 44-233, gnl|fr1|chrUn (72526135-72525948) | |
| 44-233, gnl|fr1|chrUn (72525948-72526131) | |
| 44-233, gnl|fr1|chrUn (72525950-72526131) | |
| 44-233, gnl|galGal2|chrUn (131485541-131485725) | |
| 44-233, gnl|galGal2|chrUn (131485541-131485739) | |
| 44-233, gnl|galGal2|chrUn (131485728-131485540) | |
| 44-233, gnl|galGal2|chrUn (131485720-131485544) | |
| 44-233, gnl|hg17|chr2 (74344488-74344686) | |
| 44-233, gnl|Hg17|chr2 (74344486-74344675) | |
| 44-233, gnl|hg17|chr3 (180664938-180665123) | |
| 44-233, gnl|hg17|chr5 (42003763-42003939) | |
| 44-233, gnl|hg17|chr7 (81864503-81864689) | |
| 44-233, gnl|loxAfr1|scaffold_8723 (68117-68302) | |
| 44-233, gnl|loxAfr1|scaffold_8723 (68117-68315) | |
| 44-233, gnl|loxAfr1|scaffold_8723 (68304-68116) | |
| 44-233, gnl|loxAfr1|scaffold_8723 (68296-68120) | |
| 44-233, gnl|mm7|chr6 (83338918-83338733) | |
| 44-233, gnl|mm7|chr6 (83338918-83338720) | |
| 44-233, gnl|mm7|chr6 (83338731-83338919) | |
| 44-233, gnl|mm7|chr6 (83338739-83338918) | |
| 44-233, gnl|Mm7|chr6 (83338918-83338729) | |
| 44-233, gnl|monDom2|scaffold_104 (3877251-3877067) | |
| 44-233, gnl|monDom2|scaffold_104 (3877251-3877053) | |
| 44-233, gnl|monDom2|scaffold_104 (3877064-3877251) | |
| 44-233, gnl|monDom2|scaffold_104 (3877072-3877250) | |
| 44-233, gnl|oryCun1|scaffold_120553 (15591-15403) | |
| 44-233, gnl|oryCun1|scaffold_120553 (15397-15592) | |
| 44-233, gnl|oryCun1|scaffold_120553 (15399-15562) | |
| 44-233, gnl|oryCun1|scaffold_94578 (3901-4086) | |
| 44-233, gnl|panTro1|chr12 (76747400-76747598) | |
| 44-233, gnl|panTro1|chr2 (184420769-184420954) | |
| 44-233, gnl|panTro1|chr4 (74538957-74538781) | |
| 44-233, gnl|panTro1|chr6 (83327783-83327969) | |
| 44-233, gnl|rheMac2|chr13 (74429750-74429948) | |
| 44-233, gnl|rheMac2|chr2 (107338676-107338488) | |
| 44-233, gnl|rheMac2|chr3 (134669990-134669802) | |
| 44-233, gnl|rheMac2|chr6 (41846485-41846661) | |
| 44-233, gnl|rn3|chr4 (117769242-117769059) | |
| 44-233, gnl|rn3|chr4 (117769242-117769044) | |
| 44-233, gnl|rn3|chr5 (122699903-122699715) | |
| 44-233, gnl|rn3|chr5 (122699901-122699716) | |
| 44-233, gnl|tetNig1|chr12 (6931227-6931408) | |
| 44-233, gnl|tetNig1|chr12 (6931223-6931410) | |
| 44-233, gnl|tetNig1|chr12 (6931410-6931222) | |
| 44-233, gnl|tetNig1|chr12 (6931408-6931227) | |
| 44-233, gnl|xenTro1|scaffold_5 (3741144-3741327) | |
| 44-233, gnl|xenTro1|scaffold_5 (3741142-3741342) | |
| 44-233, gnl|xenTro1|scaffold_5 (3741328-3741141) | |
| 44-233, gnl|xenTro1|scaffold_5 (3741321-3741143) | |
| 333-506, gnl|bosTau2|chr11 (8165480-8165307) | |
| 333-506, gnl|Hg17|chr2 (74347331-74347504) | |
| 333-506, gnl|Mm7|chr6 (83336753-83336580) | |
| 688-833, gnl|bosTau2|chr11 (8163202-8163056) | |
| 688-833, gnl|canFam2|chr17 (51955653-51955780) | |
| 688-833, gnl|canFam2|chr17 (51955782-51955683) | |
| 688-833, gnl|danRer3|chrUn (71267861-71267736) | |
| 688-833, gnl|danRer3|chrUn (71267738-71267833) | |
| 688-833, gnl|dasNov1|scaffold_2731 (12895-13022) | |
| 688-833, gnl|dasNov1|scaffold_2731 (13024-12925) | |
| 688-833, gnl|echTel1|scaffold_307762 (6216-6121) | |
| 688-833, gnl|echTel1|scaffold_315603 (186769-186896) | |
| 688-833, gnl|fr1|chrUn (72524833-72524958) | |
| 688-833, gnl|fr1|chrUn (72524956-72524861) | |
| 688-833, gnl|galGal2|chrUn (131489062-131488935) | |
| 688-833, gnl|Hg17|chr2 (74350503-74350649) | |
| 688-833, gnl|hg17|chr3 (96856664-96856791) | |
| 688-833, gnl|hg17|chr4 (163602377-163602473) | |
| 688-833, gnl|loxAfr1|scaffold_8723 (73730-73615) | |
| 688-833, gnl|loxAfr1|scaffold_8723 (73611-73709) | |
| 688-833, gnl|mm7|chr6 (83334304-83334428) | |
| 688-833, gnl|mm7|chr6 (83334432-83334334) | |
| 688-833, gnl|Mm7|chr6 (83334447-83334303) | |
| 688-833, gnl|monDom2|scaffold_104 (3872780-3872907) | |
| 688-833, gnl|monDom2|scaffold_13 (31277151-31277241) | |
| 688-833, gnl|oryCun1|scaffold_120553 (14826-14952) | |
| 688-833, gnl|oryCun1|scaffold_120553 (14954-14855) | |
| 688-833, gnl|panTro1|chr2 (97939414-97939541) | |
| 688-833, gnl|panTro1|chr3 (181049271-181049367) | |
| 688-833, gnl|rheMac2|chr2 (16076304-16076432) | |
| 688-833, gnl|rheMac2|chr5 (154554034-154554130) | |
| 688-833, gnl|rn3|chr5 (122700504-122700377) | |
| 688-833, gnl|rn3|chr5 (122700375-122700474) | |
| 688-833, gnl|tetNig1|chr12 (5678689-5678814) | |
| 688-833, gnl|xenTro1|scaffold_5 (3745309-3745182) |
| Aligned organism(s): 102 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-233, gnl|bosTau2|chr11 (8172735-8172546) | |
| 44-233, gnl|canFam2|chr17 (51960745-51960560) | |
| 44-233, gnl|canFam2|chr17 (51960745-51960547) | |
| 44-233, gnl|canFam2|chr17 (51960558-51960745) | |
| 44-233, gnl|canFam2|chr17 (51960566-51960744) | |
| 44-233, gnl|danRer3|chrUn (71262304-71262485) | |
| 44-233, gnl|danRer3|chrUn (71262300-71262498) | |
| 44-233, gnl|danRer3|chrUn (71262487-71262299) | |
| 44-233, gnl|danRer3|chrUn (71262485-71262326) | |
| 44-233, gnl|dasNov1|scaffold_24081 (4-169) | |
| 44-233, gnl|dasNov1|scaffold_24081 (4-182) | |
| 44-233, gnl|dasNov1|scaffold_2731 (13496-13684) | |
| 44-233, gnl|dasNov1|scaffold_2731 (13498-13683) | |
| 44-233, gnl|echTel1|scaffold_211240 (3725-3540) | |
| 44-233, gnl|echTel1|scaffold_211240 (3540-3725) | |
| 44-233, gnl|echTel1|scaffold_307762 (6856-6673) | |
| 44-233, gnl|echTel1|scaffold_307762 (6675-6862) | |
| 44-233, gnl|fr1|chrUn (72526131-72525950) | |
| 44-233, gnl|fr1|chrUn (72526135-72525948) | |
| 44-233, gnl|fr1|chrUn (72525948-72526131) | |
| 44-233, gnl|fr1|chrUn (72525950-72526131) | |
| 44-233, gnl|galGal2|chrUn (131485541-131485725) | |
| 44-233, gnl|galGal2|chrUn (131485541-131485739) | |
| 44-233, gnl|galGal2|chrUn (131485728-131485540) | |
| 44-233, gnl|galGal2|chrUn (131485720-131485544) | |
| 44-233, gnl|hg17|chr2 (74344488-74344686) | |
| 44-233, gnl|Hg17|chr2 (74344486-74344675) | |
| 44-233, gnl|hg17|chr3 (180664938-180665123) | |
| 44-233, gnl|hg17|chr5 (42003763-42003939) | |
| 44-233, gnl|hg17|chr7 (81864503-81864689) | |
| 44-233, gnl|loxAfr1|scaffold_8723 (68117-68302) | |
| 44-233, gnl|loxAfr1|scaffold_8723 (68117-68315) | |
| 44-233, gnl|loxAfr1|scaffold_8723 (68304-68116) | |
| 44-233, gnl|loxAfr1|scaffold_8723 (68296-68120) | |
| 44-233, gnl|mm7|chr6 (83338918-83338733) | |
| 44-233, gnl|mm7|chr6 (83338918-83338720) | |
| 44-233, gnl|mm7|chr6 (83338731-83338919) | |
| 44-233, gnl|mm7|chr6 (83338739-83338918) | |
| 44-233, gnl|Mm7|chr6 (83338918-83338729) | |
| 44-233, gnl|monDom2|scaffold_104 (3877251-3877067) | |
| 44-233, gnl|monDom2|scaffold_104 (3877251-3877053) | |
| 44-233, gnl|monDom2|scaffold_104 (3877064-3877251) | |
| 44-233, gnl|monDom2|scaffold_104 (3877072-3877250) | |
| 44-233, gnl|oryCun1|scaffold_120553 (15591-15403) | |
| 44-233, gnl|oryCun1|scaffold_120553 (15397-15592) | |
| 44-233, gnl|oryCun1|scaffold_120553 (15399-15562) | |
| 44-233, gnl|oryCun1|scaffold_94578 (3901-4086) | |
| 44-233, gnl|panTro1|chr12 (76747400-76747598) | |
| 44-233, gnl|panTro1|chr2 (184420769-184420954) | |
| 44-233, gnl|panTro1|chr4 (74538957-74538781) | |
| 44-233, gnl|panTro1|chr6 (83327783-83327969) | |
| 44-233, gnl|rheMac2|chr13 (74429750-74429948) | |
| 44-233, gnl|rheMac2|chr2 (107338676-107338488) | |
| 44-233, gnl|rheMac2|chr3 (134669990-134669802) | |
| 44-233, gnl|rheMac2|chr6 (41846485-41846661) | |
| 44-233, gnl|rn3|chr4 (117769242-117769059) | |
| 44-233, gnl|rn3|chr4 (117769242-117769044) | |
| 44-233, gnl|rn3|chr5 (122699903-122699715) | |
| 44-233, gnl|rn3|chr5 (122699901-122699716) | |
| 44-233, gnl|tetNig1|chr12 (6931227-6931408) | |
| 44-233, gnl|tetNig1|chr12 (6931223-6931410) | |
| 44-233, gnl|tetNig1|chr12 (6931410-6931222) | |
| 44-233, gnl|tetNig1|chr12 (6931408-6931227) | |
| 44-233, gnl|xenTro1|scaffold_5 (3741144-3741327) | |
| 44-233, gnl|xenTro1|scaffold_5 (3741142-3741342) | |
| 44-233, gnl|xenTro1|scaffold_5 (3741328-3741141) | |
| 44-233, gnl|xenTro1|scaffold_5 (3741321-3741143) | |
| 333-506, gnl|bosTau2|chr11 (8165480-8165307) | |
| 333-506, gnl|Hg17|chr2 (74347331-74347504) | |
| 333-506, gnl|Mm7|chr6 (83336753-83336580) | |
| 688-833, gnl|bosTau2|chr11 (8163202-8163056) | |
| 688-833, gnl|canFam2|chr17 (51955653-51955780) | |
| 688-833, gnl|canFam2|chr17 (51955782-51955683) | |
| 688-833, gnl|danRer3|chrUn (71267861-71267736) | |
| 688-833, gnl|danRer3|chrUn (71267738-71267833) | |
| 688-833, gnl|dasNov1|scaffold_2731 (12895-13022) | |
| 688-833, gnl|dasNov1|scaffold_2731 (13024-12925) | |
| 688-833, gnl|echTel1|scaffold_307762 (6216-6121) | |
| 688-833, gnl|echTel1|scaffold_315603 (186769-186896) | |
| 688-833, gnl|fr1|chrUn (72524833-72524958) | |
| 688-833, gnl|fr1|chrUn (72524956-72524861) | |
| 688-833, gnl|galGal2|chrUn (131489062-131488935) | |
| 688-833, gnl|Hg17|chr2 (74350503-74350649) | |
| 688-833, gnl|hg17|chr3 (96856664-96856791) | |
| 688-833, gnl|hg17|chr4 (163602377-163602473) | |
| 688-833, gnl|loxAfr1|scaffold_8723 (73730-73615) | |
| 688-833, gnl|loxAfr1|scaffold_8723 (73611-73709) | |
| 688-833, gnl|mm7|chr6 (83334304-83334428) | |
| 688-833, gnl|mm7|chr6 (83334432-83334334) | |
| 688-833, gnl|Mm7|chr6 (83334447-83334303) | |
| 688-833, gnl|monDom2|scaffold_104 (3872780-3872907) | |
| 688-833, gnl|monDom2|scaffold_13 (31277151-31277241) | |
| 688-833, gnl|oryCun1|scaffold_120553 (14826-14952) | |
| 688-833, gnl|oryCun1|scaffold_120553 (14954-14855) | |
| 688-833, gnl|panTro1|chr2 (97939414-97939541) | |
| 688-833, gnl|panTro1|chr3 (181049271-181049367) | |
| 688-833, gnl|rheMac2|chr2 (16076304-16076432) | |
| 688-833, gnl|rheMac2|chr5 (154554034-154554130) | |
| 688-833, gnl|rn3|chr5 (122700504-122700377) | |
| 688-833, gnl|rn3|chr5 (122700375-122700474) | |
| 688-833, gnl|tetNig1|chr12 (5678689-5678814) | |
| 688-833, gnl|xenTro1|scaffold_5 (3745309-3745182) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.139256) |