Non-Coding RNA Search

Ss1.1-Pig4-TMW8031A05.5

Sequence:


               
               GTACTTAATAAGTTTGGAGGCCTTCTTTAAGGTTGATGTTCGAAACTGTATATAAAATGC
TAACCCAGCTTTTACTGTATTTAATTGTTAGGCGTTGGGGATATCATGATGTGTAGTATA
GAGAAATCTTGATAAGTGTGGACCATGTCATAACAGGTTTGACCATGTCATGAATCCACA
ACCGTTCTTAGAAACTCCTTTGCGCCAAATTTTCATTGTTTTCTTAATCACCAAACCATG
TTACTAATGTTGTGTTTTGGTTTGTTTTACAGTGATCCTTTTCTGTATGGCTGCCCTAAT
ATTTCCAATAGGATTTTACATCAATGAAGTCGGAGGTCAACCTTATAAATTACCCAACAA
CACAGTAGTTGGGTCATCATATGTACTTTTTGTCTTATCAATTTTCTTTACAATAGTAGG
ACTTCTATTTGCTGGCAAAGTTTGTTTACCAGGCTGATGAATGTCTAAATTGCTTGACTT
TTTATTATTTTTTATTTTATTTTTTTATTTTTAGAGGGTGGGGAGGACAAAGGCAAGGCA
TCTGAGTAGTCCTCTCATAGGAAGATGCTTAGATGAAACCGATGCTGAAAAGGAAAAAAA
AAAAATGCTTTGATTTGTTCTCACTATGCACTTTGGATTTAAAAACAAAAAATAAGGAGA
GCCTTTTCCATAACCAAATACAGACAATAGTGACTAAATCTCCTGAGCATATTTCAGGCA
GTCAGGTCTGCACTGTGATAGCAACCTAGTGAAGGAGAATGCTTTATATTGAAAAGCATG
TGGCCCTTTGTGACTCTGTTGTTCCATTTTTAACGTCTAATGATTCATTTGAGGGAGAAA
AAAAAAAAAAAAAGGTCTAAGTATTTATGAATCATGGTGGACCAGAGGGATGCAAGAGAA
GTTCATGTGGGGCTGGCCTCACCTCCTAAGAAATTAGTGTTCACAGCTTCCTTGTAATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTACTTAATAAGTTTGGAGGCCTTCTTTAAGGTTGATGTTCGAAACTGTATATAAAATGC
TAACCCAGCTTTTACTGTATTTAATTGTTAGGCGTTGGGGATATCATGATGTGTAGTATA
GAGAAATCTTGATAAGTGTGGACCATGTCATAACAGGTTTGACCATGTCATGAATCCACA
ACCGTTCTTAGAAACTCCTTTGCGCCAAATTTTCATTGTTTTCTTAATCACCAAACCATG
TTACTAATGTTGTGTTTTGGTTTGTTTTACAGTGATCCTTTTCTGTATGGCTGCCCTAAT
ATTTCCAATAGGATTTTACATCAATGAAGTCGGAGGTCAACCTTATAAATTACCCAACAA
CACAGTAGTTGGGTCATCATATGTACTTTTTGTCTTATCAATTTTCTTTACAATAGTAGG
ACTTCTATTTGCTGGCAAAGTTTGTTTACCAGGCTGATGAATGTCTAAATTGCTTGACTT
TTTATTATTTTTTATTTTATTTTTTTATTTTTAGAGGGTGGGGAGGACAAAGGCAAGGCA
TCTGAGTAGTCCTCTCATAGGAAGATGCTTAGATGAAACCGATGCTGAAAAGGAAAAAAA
AAAAATGCTTTGATTTGTTCTCACTATGCACTTTGGATTTAAAAACAAAAAATAAGGAGA
GCCTTTTCCATAACCAAATACAGACAATAGTGACTAAATCTCCTGAGCATATTTCAGGCA
GTCAGGTCTGCACTGTGATAGCAACCTAGTGAAGGAGAATGCTTTATATTGAAAAGCATG
TGGCCCTTTGTGACTCTGTTGTTCCATTTTTAACGTCTAATGATTCATTTGAGGGAGAAA
AAAAAAAAAAAAAGGTCTAAGTATTTATGAATCATGGTGGACCAGAGGGATGCAAGAGAA
GTTCATGTGGGGCTGGCCTCACCTCCTAAGAAATTAGTGTTCACAGCTTCCTTGTAATGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20987835|gb|AAH30336.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20987835|gb|AAH30336.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               409-642, + strand, RNAz p=0.995831

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               409-642, + strand, RNAz p=0.995831

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-960, gnl|bosTau2|chr25 (17824460-17823509)
               

               
               2-960, gnl|Hg17|chr16 (21999251-22000197)
               

               
               2-960, gnl|Mm7|chr7 (116652475-116653414)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-960, gnl|bosTau2|chr25 (17824460-17823509)
               

               
               2-960, gnl|Hg17|chr16 (21999251-22000197)
               

               
               2-960, gnl|Mm7|chr7 (116652475-116653414)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               csk (0.422238)
               

               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.422238)
               

               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               spc (0.113366)

	2-960, gnl\|bosTau2\|chr25 (17824460-17823509)
	2-960, gnl\|Hg17\|chr16 (21999251-22000197)
	2-960, gnl\|Mm7\|chr7 (116652475-116653414)

	csk (0.422238)
	cte (0.29274)
	cbe (0.239234)
	ece (0.229305)
	fli (0.202881)
	aor (0.195274)
	mga (0.160205)
	fat (0.147427)
	spc (0.113366)