Non-Coding RNA Search

Ss1.1-Pig4-TMW8031A16.5

Sequence:


               
               TTGGATATTTTCGATGAAAACCTTCACCCTCTCTCGAAATCCGAAGTGCCACCAGATTAC
GACAAACACAACCCAGAGCAGAAGCAGATCTACCGGTTTGTTCGGACACTGTTCAGTGCT
GCTCAGCTGACTGCGGAATGTGCCATTGTCACCCTGGTGTACCTCGAAAGGCTTCTGACG
TATGCGGAGATCGACATCTGTCCGGCCAACTGGAAGCGGATTGTTCTCGGGGCCATCCTG
CTGGCCTCCAAGGTGTGGGACGACCAGGCGGTGTGGAACGTGGACTACTGCCAGATCCTG
AAGGACATCACGGTGGAGGACATGAACGAGCTGGAGCGACAGTTCCTCGAGTTGCTCCAG
TTCAACATCAACGTTCCCTCCAGTGTTTATGCCAAGTATTATTTTGATCTTCGTTCTCTG
GCGGAAGCCAACAACCTGAGCTTCCCCTTGGAGCCTCTGAGCAGGGAGAGGGCCCACAAG
CTGGAGGCCATCTCCCGCCTCTGCGAGGACAAGTACAAGGACCTGAGAAGACCCACGAGG
AAGCGGTCAGCCAGTGCTGACAATCTGACTCTGCCCAGGTGGTCCCCCGCCATCCTCTCC
TAACCGTTGGCATCTCCGCTGGAGGCCGTGCCATCCCTCCGTTTCTCCTGTAGTTCGAGA
AAAGACAGACGTGGGGTGGTGTGTTTGGTTTTTCCTTTCCTCTTCTTTTTAGTTCCTAGC
TCCGCCAGGCTGCCTTGATGACCGCCTCCGCGCCGCGCGCGCTCTTGCGCAGCAGGGCTC
GAGGAAGCCAGGCTCTTCCGTGGGATCCCGCCCGCGCCTTCCCGGCTCGGGGACAGCACT
TCCTTCGTGGAGGAAAAAGACTCTCATCCTGGAGGAGGAAGGGAGGGGAAGTCGTGTCGA
GGCAGGGAAAGCGGCTTGGCGGTTTCTTAAGTCTCCCCGTCGGTCGGTAGACGGAACCGA
CGGGACAGCCCGGCGTAGATGACAGAGTTGGATGCGCGTTAAAGGCCAGTGCCGCGGTCG
CCACCCCACCCGGATCAGTGTGTCCCTTGAGACTTCCTGCATTCCTTCTTGCTGCTTCTC
GGGGATTTGGGGGGGATTTTTGTTCGTTTTATTCTGTTTGGGTTTTGGTCCCACAGAGCA
GAGAATATAGTTTGTACCCACTACGGCACAGACCTCCAAATAAATAGTACTGGCTGTTTC
TCTCTGCACCACTCCTGCGAGCTGTCTTCTGAGCTTTCTTCCTCTCAAGGGGGAGCGCTT
GTCACGTTTCTGTGCACCGTTATTGTAGGTGGTTTTCTCCACAGTGGCGGAATCAACTTG
ACTGTAGTGCCGAACCAAACGGTATCCCTCCCCCCGGCTCCCCCCGCCCACGGAACATTC
TAGATCACATGGGTGCTTGTGCCTTCGGTGGTTACTCTCTTCCCTGCTGTCCTGAGTGGG
AGCCCCTTCCCCGGCCCCGGCCCACCCGCTCCTCCACGTCCATGTCCATTGTGCAAGCAA
TATCCCCCTCGAGTTTTCTATGTTTACCTTCAATCAAAGCTAGTCTATTTGTATAAAATT
TTTTAAAAATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGATATTTTCGATGAAAACCTTCACCCTCTCTCGAAATCCGAAGTGCCACCAGATTAC
GACAAACACAACCCAGAGCAGAAGCAGATCTACCGGTTTGTTCGGACACTGTTCAGTGCT
GCTCAGCTGACTGCGGAATGTGCCATTGTCACCCTGGTGTACCTCGAAAGGCTTCTGACG
TATGCGGAGATCGACATCTGTCCGGCCAACTGGAAGCGGATTGTTCTCGGGGCCATCCTG
CTGGCCTCCAAGGTGTGGGACGACCAGGCGGTGTGGAACGTGGACTACTGCCAGATCCTG
AAGGACATCACGGTGGAGGACATGAACGAGCTGGAGCGACAGTTCCTCGAGTTGCTCCAG
TTCAACATCAACGTTCCCTCCAGTGTTTATGCCAAGTATTATTTTGATCTTCGTTCTCTG
GCGGAAGCCAACAACCTGAGCTTCCCCTTGGAGCCTCTGAGCAGGGAGAGGGCCCACAAG
CTGGAGGCCATCTCCCGCCTCTGCGAGGACAAGTACAAGGACCTGAGAAGACCCACGAGG
AAGCGGTCAGCCAGTGCTGACAATCTGACTCTGCCCAGGTGGTCCCCCGCCATCCTCTCC
TAACCGTTGGCATCTCCGCTGGAGGCCGTGCCATCCCTCCGTTTCTCCTGTAGTTCGAGA
AAAGACAGACGTGGGGTGGTGTGTTTGGTTTTTCCTTTCCTCTTCTTTTTAGTTCCTAGC
TCCGCCAGGCTGCCTTGATGACCGCCTCCGCGCCGCGCGCGCTCTTGCGCAGCAGGGCTC
GAGGAAGCCAGGCTCTTCCGTGGGATCCCGCCCGCGCCTTCCCGGCTCGGGGACAGCACT
TCCTTCGTGGAGGAAAAAGACTCTCATCCTGGAGGAGGAAGGGAGGGGAAGTCGTGTCGA
GGCAGGGAAAGCGGCTTGGCGGTTTCTTAAGTCTCCCCGTCGGTCGGTAGACGGAACCGA
CGGGACAGCCCGGCGTAGATGACAGAGTTGGATGCGCGTTAAAGGCCAGTGCCGCGGTCG
CCACCCCACCCGGATCAGTGTGTCCCTTGAGACTTCCTGCATTCCTTCTTGCTGCTTCTC
GGGGATTTGGGGGGGATTTTTGTTCGTTTTATTCTGTTTGGGTTTTGGTCCCACAGAGCA
GAGAATATAGTTTGTACCCACTACGGCACAGACCTCCAAATAAATAGTACTGGCTGTTTC
TCTCTGCACCACTCCTGCGAGCTGTCTTCTGAGCTTTCTTCCTCTCAAGGGGGAGCGCTT
GTCACGTTTCTGTGCACCGTTATTGTAGGTGGTTTTCTCCACAGTGGCGGAATCAACTTG
ACTGTAGTGCCGAACCAAACGGTATCCCTCCCCCCGGCTCCCCCCGCCCACGGAACATTC
TAGATCACATGGGTGCTTGTGCCTTCGGTGGTTACTCTCTTCCCTGCTGTCCTGAGTGGG
AGCCCCTTCCCCGGCCCCGGCCCACCCGCTCCTCCACGTCCATGTCCATTGTGCAAGCAA
TATCCCCCTCGAGTTTTCTATGTTTACCTTCAATCAAAGCTAGTCTATTTGTATAAAATT
TTTTAAAAATCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q95LK3_MACFA

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q95LK3_MACFA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1123-1242, + strand, RNAz p=0.527299

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1123-1242, + strand, RNAz p=0.527299

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of AF465728, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF465728, +

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               139-324, gnl|bosTau2|chr13 (9060593-9060778)
               

               
               139-324, gnl|Hg17|chr10 (35881934-35882120)
               

               
               139-324, gnl|Mm7|chr18 (9536713-9536535)
               


               
               485-1572, gnl|bosTau2|chr13 (9064765-9065858)
               

               
               485-1572, gnl|Hg17|chr10 (35897986-35899154)
               

               
               485-1572, gnl|Mm7|chr18 (9520428-9519164)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-324, gnl|bosTau2|chr13 (9060593-9060778)
               

               
               139-324, gnl|Hg17|chr10 (35881934-35882120)
               

               
               139-324, gnl|Mm7|chr18 (9536713-9536535)
               


               
               485-1572, gnl|bosTau2|chr13 (9064765-9065858)
               

               
               485-1572, gnl|Hg17|chr10 (35897986-35899154)
               

               
               485-1572, gnl|Mm7|chr18 (9520428-9519164)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               mas (0.42061)
               

               
               fcc (0.39557)
               

               
               pla (0.267344)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               fcc (0.39557)
               

               
               pla (0.267344)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	139-324, gnl\|bosTau2\|chr13 (9060593-9060778)
	139-324, gnl\|Hg17\|chr10 (35881934-35882120)
	139-324, gnl\|Mm7\|chr18 (9536713-9536535)

	485-1572, gnl\|bosTau2\|chr13 (9064765-9065858)
	485-1572, gnl\|Hg17\|chr10 (35897986-35899154)
	485-1572, gnl\|Mm7\|chr18 (9520428-9519164)

	mas (0.42061)
	fcc (0.39557)
	pla (0.267344)
	ecc (0.23007)
	nms (0.213858)
	col (0.195008)
	nep (0.183925)
	fbs (0.175346)
	csp (0.161186)
	cag (0.151194)
	fat (0.147427)
	hyp (0.142837)
	hlv (0.139256)
	nmm (0.132802)
	cov (0.132153)
	clu (0.119646)
	nbm (0.0993246)
	eje (0.0988338)