Non-Coding RNA Search

Ss1.1-Pig4-TMW8031A23.5

Sequence:


               
               GGACCAGTGAATCCGCGTTGCTCTCTGCTTGGTCTCACCTGCCTCCACACATGGACCCCA
ACTGCTCCTGCCCCACAGGTAAGAGTTGGCTGGCTTCGAGCCTCCGGATGCCCCATCCCA
GGCACAGGACGTGGGGTCCTTGGGGTGAGAGAAAGGGGAATTGTGAGTGGGAGCACAGGT
GGACTCCTGTCATTATTCCAGGCCTTTTTTCCTAGCCACGGTCCTGGGGGGCATTTCCAG
TCTCCTTTTGCCTCTGTTTTAAGTTTGGGGGTACTGAGGCTACAGGCCGCCCTTCTTGAT
GTTACCCAGCAAATCAAGGGACATTTGGGTTTGACTCTATGCTCTTTCCAGGCCTCAGAG
CTGCCAAGGCTTGGTGGGAGGAAGGGACATTGCCTCATTGGGGTTTGGCTCATAAGGTGC
TGGCCCCCAGCCCCAGTCAGCCTGGAGTCAGCCCCAGTCAGGTCTGGAGCCCGGGACCTG
CCTGTGGAGGAAGTCAGGAGGGGACCTACCATCCAACACCAGAAGAGAGAAGCTGGGGCT
TCTGCATATGCCTGAGTGGGGCAGGAGCTCCCAGGGCTGGGCCCTGACAGAGCAGGAGGG
GGAGGGAGGCATTGCTGACATCTGCTGTGGCCCCTGGGTCCCGCTCCTGCTCACTGCTGT
CTCTCCCTTGCTGGCAGGTGGCTCCTGCAGCTGCGCAGGCTCCTGCACATGCAAAGCCTG
CAGATGCACCTCCTGCAAGAAGAGTGAGTGTGGGGCCTTCCCTGGGGGTCTGGGGTCTGG
GCTGAGTCAGAGGAGGGAGCCCTGAGCTCAGCAGGCACACATGGACCCCAACTGCTCCTG
CCCCACAGGTGGCTCCTGCAGCTGCGCAGGCTCCTGCACATGCAAAGCCTGCAGATGCAC
CTCCTGCAAGAAGAGCTGCTGCTCCTGCTGCCCCGCGGGCTGTGCCAAGTGTGCCCAGGG
CTGCATCTGCAAAGGAGCCTCGGACAAGTGCAGCTGCTGTGCCTGATGTCGGGGAGACCC
TGTCCCAGAAATCAATAGAACAACATAGACAAACCTGCATTTTAATATTTTCCATACAAG
CTGACCTCATGCTACATCCCTTTTTCTATGAAATATGTGAGTTGTAATAAATGTTGTCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCAGTGAATCCGCGTTGCTCTCTGCTTGGTCTCACCTGCCTCCACACATGGACCCCA
ACTGCTCCTGCCCCACAGGTAAGAGTTGGCTGGCTTCGAGCCTCCGGATGCCCCATCCCA
GGCACAGGACGTGGGGTCCTTGGGGTGAGAGAAAGGGGAATTGTGAGTGGGAGCACAGGT
GGACTCCTGTCATTATTCCAGGCCTTTTTTCCTAGCCACGGTCCTGGGGGGCATTTCCAG
TCTCCTTTTGCCTCTGTTTTAAGTTTGGGGGTACTGAGGCTACAGGCCGCCCTTCTTGAT
GTTACCCAGCAAATCAAGGGACATTTGGGTTTGACTCTATGCTCTTTCCAGGCCTCAGAG
CTGCCAAGGCTTGGTGGGAGGAAGGGACATTGCCTCATTGGGGTTTGGCTCATAAGGTGC
TGGCCCCCAGCCCCAGTCAGCCTGGAGTCAGCCCCAGTCAGGTCTGGAGCCCGGGACCTG
CCTGTGGAGGAAGTCAGGAGGGGACCTACCATCCAACACCAGAAGAGAGAAGCTGGGGCT
TCTGCATATGCCTGAGTGGGGCAGGAGCTCCCAGGGCTGGGCCCTGACAGAGCAGGAGGG
GGAGGGAGGCATTGCTGACATCTGCTGTGGCCCCTGGGTCCCGCTCCTGCTCACTGCTGT
CTCTCCCTTGCTGGCAGGTGGCTCCTGCAGCTGCGCAGGCTCCTGCACATGCAAAGCCTG
CAGATGCACCTCCTGCAAGAAGAGTGAGTGTGGGGCCTTCCCTGGGGGTCTGGGGTCTGG
GCTGAGTCAGAGGAGGGAGCCCTGAGCTCAGCAGGCACACATGGACCCCAACTGCTCCTG
CCCCACAGGTGGCTCCTGCAGCTGCGCAGGCTCCTGCACATGCAAAGCCTGCAGATGCAC
CTCCTGCAAGAAGAGCTGCTGCTCCTGCTGCCCCGCGGGCTGTGCCAAGTGTGCCCAGGG
CTGCATCTGCAAAGGAGCCTCGGACAAGTGCAGCTGCTGTGCCTGATGTCGGGGAGACCC
TGTCCCAGAAATCAATAGAACAACATAGACAAACCTGCATTTTAATATTTTCCATACAAG
CTGACCTCATGCTACATCCCTTTTTCTATGAAATATGTGAGTTGTAATAAATGTTGTCGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               MT1F_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               MT1F_PIG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               438-706, + strand, RNAz p=0.896999
               

               
               856-974, - strand, RNAz p=0.667998
               

               
               857-973, - strand, RNAz p=0.990127

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               438-706, + strand, RNAz p=0.896999
               

               
               856-974, - strand, RNAz p=0.667998
               

               
               857-973, - strand, RNAz p=0.990127

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               51-817, gnl|bosTau2|chr18 (24087703-24088442)
               

               
               51-817, gnl|Hg17|chr16 (55249472-55250215)
               


               
               818-1140, gnl|bosTau2|chr10 (21392989-21392666)
               

               
               818-1140, gnl|canFam2|chr12 (49320631-49320350)
               

               
               818-1140, gnl|dasNov1|scaffold_45545 (4105-4335)
               

               
               818-1140, gnl|echTel1|scaffold_277080 (37857-38090)
               

               
               818-1140, gnl|Hg17|chr1 (16313202-16312883)
               

               
               818-1140, gnl|hg17|chr9 (1237108-1237301)
               

               
               818-1140, gnl|loxAfr1|scaffold_197749 (729-499)
               

               
               818-1140, gnl|mm7|chr12 (5587220-5587000)
               

               
               818-1140, gnl|Mm7|chr12 (5586919-5587231)
               

               
               818-1140, gnl|oryCun1|scaffold_109111 (7872-7662)
               

               
               818-1140, gnl|panTro1|chr2 (10029591-10029821)
               

               
               818-1140, gnl|rheMac2|chr15 (75974843-75974651)
               

               
               818-1140, gnl|rn3|chrX (55341880-55342104)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-817, gnl|bosTau2|chr18 (24087703-24088442)
               

               
               51-817, gnl|Hg17|chr16 (55249472-55250215)
               


               
               818-1140, gnl|bosTau2|chr10 (21392989-21392666)
               

               
               818-1140, gnl|canFam2|chr12 (49320631-49320350)
               

               
               818-1140, gnl|dasNov1|scaffold_45545 (4105-4335)
               

               
               818-1140, gnl|echTel1|scaffold_277080 (37857-38090)
               

               
               818-1140, gnl|Hg17|chr1 (16313202-16312883)
               

               
               818-1140, gnl|hg17|chr9 (1237108-1237301)
               

               
               818-1140, gnl|loxAfr1|scaffold_197749 (729-499)
               

               
               818-1140, gnl|mm7|chr12 (5587220-5587000)
               

               
               818-1140, gnl|Mm7|chr12 (5586919-5587231)
               

               
               818-1140, gnl|oryCun1|scaffold_109111 (7872-7662)
               

               
               818-1140, gnl|panTro1|chr2 (10029591-10029821)
               

               
               818-1140, gnl|rheMac2|chr15 (75974843-75974651)
               

               
               818-1140, gnl|rn3|chrX (55341880-55342104)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eli (0.151814)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)
               

               
               nbm (0.0993246)

	438-706, + strand, RNAz p=0.896999
	856-974, - strand, RNAz p=0.667998
	857-973, - strand, RNAz p=0.990127

	51-817, gnl\|bosTau2\|chr18 (24087703-24088442)
	51-817, gnl\|Hg17\|chr16 (55249472-55250215)

	818-1140, gnl\|bosTau2\|chr10 (21392989-21392666)
	818-1140, gnl\|canFam2\|chr12 (49320631-49320350)
	818-1140, gnl\|dasNov1\|scaffold_45545 (4105-4335)
	818-1140, gnl\|echTel1\|scaffold_277080 (37857-38090)
	818-1140, gnl\|Hg17\|chr1 (16313202-16312883)
	818-1140, gnl\|hg17\|chr9 (1237108-1237301)
	818-1140, gnl\|loxAfr1\|scaffold_197749 (729-499)
	818-1140, gnl\|mm7\|chr12 (5587220-5587000)
	818-1140, gnl\|Mm7\|chr12 (5586919-5587231)
	818-1140, gnl\|oryCun1\|scaffold_109111 (7872-7662)
	818-1140, gnl\|panTro1\|chr2 (10029591-10029821)
	818-1140, gnl\|rheMac2\|chr15 (75974843-75974651)
	818-1140, gnl\|rn3\|chrX (55341880-55342104)