Non-Coding RNA Search

Ss1.1-Pig4-TMW8031A24.3

Sequence:


               
               AAGAAAAGCAGCATGGTTGCACTGAAAAGACTGCCCTTTTTGAGGAACAGACCGAAGGAT
AAAGACAAAATGAAGGCCTGCTACCGTCGTTCCATGTCCATGAATGACCTGGTGCAGTCC
ATGGTCCTAGCAGGAGGACAGTGGACAGGTAGTACTGAGAATTTGGAGGTTCCTGATGAT
ATTTCAACGGGTAAAAGGAGAAAAGAGTTGGGAGCTATGGCCTTCTCTACTACAGCCATC
AACTTTTCAGCTGTCAACTCTTCTACAGGCTTCAGATCCAAGCAGTTGGTTAATAATAAA
GATACTACATCCTTTGAAGACGTAAGTCCACAAGGTATTAGTGATGATTCTAGTACGGGA
TCAAGAGTTCATGCTTCGAGACCAGCCAGCCTTGATAGTGGCAGAACATCCACTAGCAAT
AGCAATAATAATGCTTCACTCCATGAAGTCAAAGCAGGTGCAGTTAATATCCAAAGCAGG
CCACAAAGCCACAGCAGTGGAGAATTTAGCCTGCTTCATGAGCATGAAGCCTGGTCCAGC
AGTGGTAGCAGTCCAATCCAGTACTTGAAAAGACAAACCAGATCAAGTCCAGTGCTCCAG
CACAAAACACTAGAGAGTCGAGCACATCGCAAGATCAAAAGTGGTTCCCCTGGAAGTGAA
GTTGTTACTCTACAACAGTTTTTGGAAGAAAGCAACAAGCTTACCTCAATACAGATAAAG
CCCTCAAGTCAAGAGAATCTTTTAGATGAAGTAATGAAAAGTTTGTCTGTATCTTCTGAC
TTTTTGGGAAAAAACAAACCAGTTAGCTGTGGTCTGGCCAGGTCAGTAAGTGGAAAAACT
CCTGGAGACTTCTATGACAGACGGACAACTAAGCCTGAACAGTTTGTGAGACCTGGTCCT
CAAAAGACTGAAGATACCTATTTCATTAGTTCTTCAGGAAAGTCTACACTAGGCACTCAA
GGAAAGATAAAGTTAGTAAAAGAAACTTCTCTGTCACGACAATCAAAAGATAGTAATCCT
TATGCCACTTTACCTCGTGCAAGCAGTGTGATCTCTACTGCCGAAGGAACTACTCGAAGG
ACAAGTATCCATGATTTTTTGACAAAAGACAGTAGACTACCTATGTCAGTTGATTCACCA
CCAGCTACTGCTGATAGCAGCATCACTGCAGCATCTAGTGAGTACCATTTATACCCGTGG
TCCTCTCATACACTTCACGGTCCAGCATATCCTGTAGGCTCTCAAGCACAAAATAATTTA
GGTACAGACAAGCCCAAGTCTCCATATGCCCAGACCAGANACTTAAGAGCAGAAAAGTCA
TATTTTCTAAACCAAACTTTTGCCACTAGTAATATGTTTAATGATGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAAAAGCAGCATGGTTGCACTGAAAAGACTGCCCTTTTTGAGGAACAGACCGAAGGAT
AAAGACAAAATGAAGGCCTGCTACCGTCGTTCCATGTCCATGAATGACCTGGTGCAGTCC
ATGGTCCTAGCAGGAGGACAGTGGACAGGTAGTACTGAGAATTTGGAGGTTCCTGATGAT
ATTTCAACGGGTAAAAGGAGAAAAGAGTTGGGAGCTATGGCCTTCTCTACTACAGCCATC
AACTTTTCAGCTGTCAACTCTTCTACAGGCTTCAGATCCAAGCAGTTGGTTAATAATAAA
GATACTACATCCTTTGAAGACGTAAGTCCACAAGGTATTAGTGATGATTCTAGTACGGGA
TCAAGAGTTCATGCTTCGAGACCAGCCAGCCTTGATAGTGGCAGAACATCCACTAGCAAT
AGCAATAATAATGCTTCACTCCATGAAGTCAAAGCAGGTGCAGTTAATATCCAAAGCAGG
CCACAAAGCCACAGCAGTGGAGAATTTAGCCTGCTTCATGAGCATGAAGCCTGGTCCAGC
AGTGGTAGCAGTCCAATCCAGTACTTGAAAAGACAAACCAGATCAAGTCCAGTGCTCCAG
CACAAAACACTAGAGAGTCGAGCACATCGCAAGATCAAAAGTGGTTCCCCTGGAAGTGAA
GTTGTTACTCTACAACAGTTTTTGGAAGAAAGCAACAAGCTTACCTCAATACAGATAAAG
CCCTCAAGTCAAGAGAATCTTTTAGATGAAGTAATGAAAAGTTTGTCTGTATCTTCTGAC
TTTTTGGGAAAAAACAAACCAGTTAGCTGTGGTCTGGCCAGGTCAGTAAGTGGAAAAACT
CCTGGAGACTTCTATGACAGACGGACAACTAAGCCTGAACAGTTTGTGAGACCTGGTCCT
CAAAAGACTGAAGATACCTATTTCATTAGTTCTTCAGGAAAGTCTACACTAGGCACTCAA
GGAAAGATAAAGTTAGTAAAAGAAACTTCTCTGTCACGACAATCAAAAGATAGTAATCCT
TATGCCACTTTACCTCGTGCAAGCAGTGTGATCTCTACTGCCGAAGGAACTACTCGAAGG
ACAAGTATCCATGATTTTTTGACAAAAGACAGTAGACTACCTATGTCAGTTGATTCACCA
CCAGCTACTGCTGATAGCAGCATCACTGCAGCATCTAGTGAGTACCATTTATACCCGTGG
TCCTCTCATACACTTCACGGTCCAGCATATCCTGTAGGCTCTCAAGCACAAAATAATTTA
GGTACAGACAAGCCCAAGTCTCCATATGCCCAGACCAGANACTTAAGAGCAGAAAAGTCA
TATTTTCTAAACCAAACTTTTGCCACTAGTAATATGTTTAATGATGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8C486_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8C486_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               98-1229, + strand, RNAz p=0.818756
               

               
               750-869, - strand, RNAz p=0.731667

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               98-1229, + strand, RNAz p=0.818756
               

               
               750-869, - strand, RNAz p=0.731667

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               98-304, gnl|bosTau2|chr11 (20373460-20373254)
               

               
               98-304, gnl|Hg17|chr2 (55440859-55440656)
               

               
               98-304, gnl|Mm7|chr11 (29450415-29450621)
               


               
               711-1368, gnl|bosTau2|chr11 (20369052-20368398)
               

               
               711-1368, gnl|Hg17|chr2 (55434847-55434193)
               

               
               711-1368, gnl|Mm7|chr11 (29455854-29456469)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-304, gnl|bosTau2|chr11 (20373460-20373254)
               

               
               98-304, gnl|Hg17|chr2 (55440859-55440656)
               

               
               98-304, gnl|Mm7|chr11 (29450415-29450621)
               


               
               711-1368, gnl|bosTau2|chr11 (20369052-20368398)
               

               
               711-1368, gnl|Hg17|chr2 (55434847-55434193)
               

               
               711-1368, gnl|Mm7|chr11 (29455854-29456469)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               elu (0.385356)
               

               
               ova (0.129132)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ova (0.129132)

	98-1229, + strand, RNAz p=0.818756
	750-869, - strand, RNAz p=0.731667

	98-304, gnl\|bosTau2\|chr11 (20373460-20373254)
	98-304, gnl\|Hg17\|chr2 (55440859-55440656)
	98-304, gnl\|Mm7\|chr11 (29450415-29450621)

	711-1368, gnl\|bosTau2\|chr11 (20369052-20368398)
	711-1368, gnl\|Hg17\|chr2 (55434847-55434193)
	711-1368, gnl\|Mm7\|chr11 (29455854-29456469)