Non-Coding RNA Search

Ss1.1-Pig4-TMW8031B01.3

Sequence:


               
               TTGCATTATCTCCTCCCTAAGTTTAGAGCTTTAACAGATGCACTGCCCTAAATAGGACAC
GATATGAGGTTAGCCGATGTTTGAGTAGAACCTAGACACTTCCAGGGCTTCAGTAGCCTT
TTGCCCCTGTATTTGAAATTTGCCCTTGTATTGAATCCTTGTTGATTTTTCTCTCTTTTG
GCTTTGACCACTCTGGTCCATTATTTCCTCCCTTATTGATATACACTCCATCTGTGACTT
TCTCTTCAGCTCTGCTGCATTTAGCATGCATGCTCCAGTGGGACCTGCTGCACCTTTCAG
TGACACTTCAGACATCCTATCCCTGTGGCATGATGTCTCGGGTCAGAGCACCTTTCACTT
AGTGCCACCAAGGGAGACATACAGTCCCTCTGGGAAGCAGGGCCTCTCAGCTCTGGGAGG
GGTCTGTGCTATCTTGGATTGGTCTCCAGTTGTGGCAGTGACAGAGGACGGACTGACCCT
TGTTGGCTGGTATTGAAGGCCTTAGCCTGGAAATTGCTAGCCTTTCAAAGGAGCATATGG
ATTGGAATTAGGCCAAAGCATAGGAAAATGGGAATAAACAGAAATAAATGCTTTTATAGT
CAAAAGACACTGTTGGGTAGTCTCTAGAGCTCATCGTTTTTCATACTACCTCTCTCCACT
GACCTGTGCTAAGAGCTGTCTGTGGAATTGTACAACACAGGCTGGGGCCAACACAGTGCA
GAGGGGGACACATCTCATTTTCATCATTAAAACTGTGGGGTCCTTATTCTGTATTTTCCT
CAAGTGAGTGCATCATATTTGGTTTGGGGATTTATTTCCATTCCTCTATCAAGCATTAAA
TGATTGATAACTGTTTCCTCTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCATTATCTCCTCCCTAAGTTTAGAGCTTTAACAGATGCACTGCCCTAAATAGGACAC
GATATGAGGTTAGCCGATGTTTGAGTAGAACCTAGACACTTCCAGGGCTTCAGTAGCCTT
TTGCCCCTGTATTTGAAATTTGCCCTTGTATTGAATCCTTGTTGATTTTTCTCTCTTTTG
GCTTTGACCACTCTGGTCCATTATTTCCTCCCTTATTGATATACACTCCATCTGTGACTT
TCTCTTCAGCTCTGCTGCATTTAGCATGCATGCTCCAGTGGGACCTGCTGCACCTTTCAG
TGACACTTCAGACATCCTATCCCTGTGGCATGATGTCTCGGGTCAGAGCACCTTTCACTT
AGTGCCACCAAGGGAGACATACAGTCCCTCTGGGAAGCAGGGCCTCTCAGCTCTGGGAGG
GGTCTGTGCTATCTTGGATTGGTCTCCAGTTGTGGCAGTGACAGAGGACGGACTGACCCT
TGTTGGCTGGTATTGAAGGCCTTAGCCTGGAAATTGCTAGCCTTTCAAAGGAGCATATGG
ATTGGAATTAGGCCAAAGCATAGGAAAATGGGAATAAACAGAAATAAATGCTTTTATAGT
CAAAAGACACTGTTGGGTAGTCTCTAGAGCTCATCGTTTTTCATACTACCTCTCTCCACT
GACCTGTGCTAAGAGCTGTCTGTGGAATTGTACAACACAGGCTGGGGCCAACACAGTGCA
GAGGGGGACACATCTCATTTTCATCATTAAAACTGTGGGGTCCTTATTCTGTATTTTCCT
CAAGTGAGTGCATCATATTTGGTTTGGGGATTTATTTCCATTCCTCTATCAAGCATTAAA
TGATTGATAACTGTTTCCTCTAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               620-724, - strand, RNAz p=0.633543

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               620-724, - strand, RNAz p=0.633543

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               1-860, gnl|bosTau2|chr16 (54030116-54031011)
               

               
               1-860, gnl|canFam2|chr11 (73493502-73494786)
               

               
               1-860, gnl|dasNov1|scaffold_99495 (6313-5078)
               

               
               1-860, gnl|echTel1|scaffold_309446 (46962-48167)
               

               
               1-860, gnl|hg17|chr9 (116541543-116542818)
               

               
               1-860, gnl|Hg17|chr9 (116541703-116542582)
               

               
               1-860, gnl|loxAfr1|scaffold_1552 (133468-134722)
               

               
               1-860, gnl|mm7|chr4 (65048877-65050149)
               

               
               1-860, gnl|Mm7|chr4 (65049040-65049930)
               

               
               1-860, gnl|monDom2|scaffold_38 (7180448-7181639)
               

               
               1-860, gnl|oryCun1|scaffold_214274 (60626-59381)
               

               
               1-860, gnl|panTro1|chr11 (101120482-101121754)
               

               
               1-860, gnl|rheMac2|chr15 (19394032-19392760)
               

               
               1-860, gnl|rn3|chr5 (82395349-82396616)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-860, gnl|bosTau2|chr16 (54030116-54031011)
               

               
               1-860, gnl|canFam2|chr11 (73493502-73494786)
               

               
               1-860, gnl|dasNov1|scaffold_99495 (6313-5078)
               

               
               1-860, gnl|echTel1|scaffold_309446 (46962-48167)
               

               
               1-860, gnl|hg17|chr9 (116541543-116542818)
               

               
               1-860, gnl|Hg17|chr9 (116541703-116542582)
               

               
               1-860, gnl|loxAfr1|scaffold_1552 (133468-134722)
               

               
               1-860, gnl|mm7|chr4 (65048877-65050149)
               

               
               1-860, gnl|Mm7|chr4 (65049040-65049930)
               

               
               1-860, gnl|monDom2|scaffold_38 (7180448-7181639)
               

               
               1-860, gnl|oryCun1|scaffold_214274 (60626-59381)
               

               
               1-860, gnl|panTro1|chr11 (101120482-101121754)
               

               
               1-860, gnl|rheMac2|chr15 (19394032-19392760)
               

               
               1-860, gnl|rn3|chr5 (82395349-82396616)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               cte (0.29274)
               

               
               cmu (0.186393)
               

               
               csp (0.161186)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               cmu (0.186393)
               

               
               csp (0.161186)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	1-860, gnl\|bosTau2\|chr16 (54030116-54031011)
	1-860, gnl\|canFam2\|chr11 (73493502-73494786)
	1-860, gnl\|dasNov1\|scaffold_99495 (6313-5078)
	1-860, gnl\|echTel1\|scaffold_309446 (46962-48167)
	1-860, gnl\|hg17\|chr9 (116541543-116542818)
	1-860, gnl\|Hg17\|chr9 (116541703-116542582)
	1-860, gnl\|loxAfr1\|scaffold_1552 (133468-134722)
	1-860, gnl\|mm7\|chr4 (65048877-65050149)
	1-860, gnl\|Mm7\|chr4 (65049040-65049930)
	1-860, gnl\|monDom2\|scaffold_38 (7180448-7181639)
	1-860, gnl\|oryCun1\|scaffold_214274 (60626-59381)
	1-860, gnl\|panTro1\|chr11 (101120482-101121754)
	1-860, gnl\|rheMac2\|chr15 (19394032-19392760)
	1-860, gnl\|rn3\|chr5 (82395349-82396616)

	cte (0.29274)
	cmu (0.186393)
	csp (0.161186)
	spc (0.113366)
	cty (0.10408)