Non-Coding RNA Search

Ss1.1-Pig4-TMW8031B03.5

Sequence:


               
               GGGGAATGCAGGGGCTCCGTCGCACGGGGGCTCTCATGGGGACGAAGAAGGAGAGCGTGT
GGCAACAGAGCAAGAGCACTGGACTGGCTCCACTCTGCCGTCGCATCTGTCCTGTAACCG
GAAAGTCAGTCACATCCCCTCCTGGGAGGGATGTGCTTTCTGTCAAGTGCAGACGTGCCC
TGTCCAGGGCCACCCGCAGTAGCGGACTGGCTCTCGGGACACTGACCACCAGGCAGCCCT
GTGGACCCAGGAAAAGTTGTTCAGAGGGACACCAGCCATCCTTGGTGACAGGGGCCCCAC
ATTTGCCTCTGTGCCCTCCCCTCGGGAAGGAGATGAAGGGGGAGCAGCCCTTTCACAGAC
ACGAGCACATCAGCAAACCCCATGAACGTGGAATTTTCTAACAAAATAAACTTGCTTGTT
TGCTCTGTTTTCTGTAACTTTTGCTAAATACTTTATACATTTTTAATGTTACAAAGCTGT
CTCCTCCAGCACCCCTCATCCCGGTATGCGTGTGTTGGCGCCACACTGTATACCCTTCCA
TGCCCTGGCTGCCGAGATCCGTACATAAAATCGTTGTACTATAATTTTTAAGTAACACTG
TTGTGACCCCGACGGAGGCTGTGACCCGCCCTGCCCACTCTGCTCCCACCCCACCCCCAT
CGTAGCACTGGTGTGTATTAAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAATGCAGGGGCTCCGTCGCACGGGGGCTCTCATGGGGACGAAGAAGGAGAGCGTGT
GGCAACAGAGCAAGAGCACTGGACTGGCTCCACTCTGCCGTCGCATCTGTCCTGTAACCG
GAAAGTCAGTCACATCCCCTCCTGGGAGGGATGTGCTTTCTGTCAAGTGCAGACGTGCCC
TGTCCAGGGCCACCCGCAGTAGCGGACTGGCTCTCGGGACACTGACCACCAGGCAGCCCT
GTGGACCCAGGAAAAGTTGTTCAGAGGGACACCAGCCATCCTTGGTGACAGGGGCCCCAC
ATTTGCCTCTGTGCCCTCCCCTCGGGAAGGAGATGAAGGGGGAGCAGCCCTTTCACAGAC
ACGAGCACATCAGCAAACCCCATGAACGTGGAATTTTCTAACAAAATAAACTTGCTTGTT
TGCTCTGTTTTCTGTAACTTTTGCTAAATACTTTATACATTTTTAATGTTACAAAGCTGT
CTCCTCCAGCACCCCTCATCCCGGTATGCGTGTGTTGGCGCCACACTGTATACCCTTCCA
TGCCCTGGCTGCCGAGATCCGTACATAAAATCGTTGTACTATAATTTTTAAGTAACACTG
TTGTGACCCCGACGGAGGCTGTGACCCGCCCTGCCCACTCTGCTCCCACCCCACCCCCAT
CGTAGCACTGGTGTGTATTAAGGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               348-460, - strand, RNAz p=0.677531

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               348-460, - strand, RNAz p=0.677531

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               37-684, gnl|bosTau2|chr19 (21899028-21898381)
               

               
               37-684, gnl|Hg17|chr17 (9755395-9754741)
               

               
               37-684, gnl|Mm7|chr11 (67769892-67770467)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-684, gnl|bosTau2|chr19 (21899028-21898381)
               

               
               37-684, gnl|Hg17|chr17 (9755395-9754741)
               

               
               37-684, gnl|Mm7|chr11 (67769892-67770467)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               csp (0.161186)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               cly (0.120642)

	37-684, gnl\|bosTau2\|chr19 (21899028-21898381)
	37-684, gnl\|Hg17\|chr17 (9755395-9754741)
	37-684, gnl\|Mm7\|chr11 (67769892-67770467)