Ss1.1-Pig4-TMW8031B04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGAACATGAACCTGATGGATGCATCTGTGCAGCCCCTGGCCCTGGGGTTGCTAGAGAGT GTCACCTTGAGCAGCCCTGCCCTGGGCCAGCTGGTCAAGAGTGAGGTGCCACTGGATAGG CTGCTGGTGCACCTACAGGTGATGAACCAGCAGCTGCAAACCAAGGCCATGGCACTGCTG ACAGCTTTGCTGCAGGGAGCCAGCCCTGCTGAACGTAAGCACATGCTCGACTACCTGTGG CAGAGAAACCTTCGCCAGTTCATCTACAAGAACATCATCCACAGCGCAACGCCACTGGGC GACGAGATGGCTCACCACCTGTACGTACTGCAGGCCCTTACACTGGGGCTGCTGGAGCCG CGCATGCGGACGCCACTGGACCCCTACAGCCAGGAGCAGCGGGAGCAGCTGCAGGCCTTG CGCCAGGCTGCCTTTGAGCCGGAGGGGGAGTCCCTGGGCTCTGGGCTGAGTGCTGATCGT CGCCGTTCCCTCTGTGCCCGCGAGTTCCGCAAACTGGGCTTCTCGAACAGCAACCCCGCG CAGGACCTGGAGCGGGTGCCCCCTGGCCTGCTGGCCCTGGACAACATGCTCTACTTCTCC AGACACGCACCCAGTGCCTACAGCCGGTTTGTGCTGGAGAACAGCAGCCGTGAGGACAAG CACGAGTGTCCCTTTGCTCGGAGCAGCATCCAGTTGACGGTGCTGCTGTGTGAGCTGCTC CGCGTTGGGGAGCCCTGCTCCGAAACAGCCCAGGACTTTTCACCTATGTTCTTCGGCCAA GACCAGAGCTTCCATGAGCTCTTCTGTGTGAGCATCCAGCTGCTGAATAAGACCTGGAAG GAGATGCGGGCCACTCAGGAGGACTTTGACAAGGTCATGCAGGTGGTGCGGGAACAGCTG GCCCGCACCCTGGCCCTGAAGCCCAGCTCCCTGGAGCTCTTCCGAACCAAGGTGAATGCC CTCACCTACGGGGAGGTGCTGCGGCTGCGGCAGACGGAGCGGCTGCACCAGGAAGGCACG CTGGCCCCTCCCATTCTGGAGCTGCGGGAGAAGCTGAAGCCAGAGCTCATGGGCCTGATC CGCCAACAGCGTTTGCTCCGCCTCTGCGAGGGGACCCTCTTCCGCAAGATCAGCAGCCGG AGGCGCCAGGGTCATTGCGTGGGCTGCTGCCTGTCCGGGCGGCTGGATTGGGGTCAGGGA GCGTCCCTCTCACCACATCTCTGTCCTCTTCCGCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGAACATGAACCTGATGGATGCATCTGTGCAGCCCCTGGCCCTGGGGTTGCTAGAGAGT GTCACCTTGAGCAGCCCTGCCCTGGGCCAGCTGGTCAAGAGTGAGGTGCCACTGGATAGG CTGCTGGTGCACCTACAGGTGATGAACCAGCAGCTGCAAACCAAGGCCATGGCACTGCTG ACAGCTTTGCTGCAGGGAGCCAGCCCTGCTGAACGTAAGCACATGCTCGACTACCTGTGG CAGAGAAACCTTCGCCAGTTCATCTACAAGAACATCATCCACAGCGCAACGCCACTGGGC GACGAGATGGCTCACCACCTGTACGTACTGCAGGCCCTTACACTGGGGCTGCTGGAGCCG CGCATGCGGACGCCACTGGACCCCTACAGCCAGGAGCAGCGGGAGCAGCTGCAGGCCTTG CGCCAGGCTGCCTTTGAGCCGGAGGGGGAGTCCCTGGGCTCTGGGCTGAGTGCTGATCGT CGCCGTTCCCTCTGTGCCCGCGAGTTCCGCAAACTGGGCTTCTCGAACAGCAACCCCGCG CAGGACCTGGAGCGGGTGCCCCCTGGCCTGCTGGCCCTGGACAACATGCTCTACTTCTCC AGACACGCACCCAGTGCCTACAGCCGGTTTGTGCTGGAGAACAGCAGCCGTGAGGACAAG CACGAGTGTCCCTTTGCTCGGAGCAGCATCCAGTTGACGGTGCTGCTGTGTGAGCTGCTC CGCGTTGGGGAGCCCTGCTCCGAAACAGCCCAGGACTTTTCACCTATGTTCTTCGGCCAA GACCAGAGCTTCCATGAGCTCTTCTGTGTGAGCATCCAGCTGCTGAATAAGACCTGGAAG GAGATGCGGGCCACTCAGGAGGACTTTGACAAGGTCATGCAGGTGGTGCGGGAACAGCTG GCCCGCACCCTGGCCCTGAAGCCCAGCTCCCTGGAGCTCTTCCGAACCAAGGTGAATGCC CTCACCTACGGGGAGGTGCTGCGGCTGCGGCAGACGGAGCGGCTGCACCAGGAAGGCACG CTGGCCCCTCCCATTCTGGAGCTGCGGGAGAAGCTGAAGCCAGAGCTCATGGGCCTGATC CGCCAACAGCGTTTGCTCCGCCTCTGCGAGGGGACCCTCTTCCGCAAGATCAGCAGCCGG AGGCGCCAGGGTCATTGCGTGGGCTGCTGCCTGTCCGGGCGGCTGGATTGGGGTCAGGGA GCGTCCCTCTCACCACATCTCTGTCCTCTTCCGCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-130, + strand, RNAz p=0.73338 | |
| 22-141, + strand, RNAz p=0.834011 | |
| 627-737, + strand, RNAz p=0.592473 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-130, + strand, RNAz p=0.73338 | |
| 22-141, + strand, RNAz p=0.834011 | |
| 627-737, + strand, RNAz p=0.592473 |
| Aligned organism(s): 90 entry(ies) | More info |
| Aligned organism(s): 90 entry(ies) | Help | Less info |
| 1-141, gnl|bosTau2|chr18 (28383479-28383619) | |
| 1-141, gnl|canFam2|chr5 (85175523-85175356) | |
| 1-141, gnl|danRer3|chr2 (21205930-21206096) | |
| 1-141, gnl|dasNov1|scaffold_46841 (5518-5684) | |
| 1-141, gnl|fr1|chrUn (216314613-216314447) | |
| 1-141, gnl|galGal2|chr11 (988160-988333) | |
| 1-141, gnl|hg17|chr16 (65792053-65792219) | |
| 1-141, gnl|Hg17|chr16 (65792073-65792213) | |
| 1-141, gnl|loxAfr1|scaffold_9166 (65009-65160) | |
| 1-141, gnl|mm7|chr8 (103905670-103905836) | |
| 1-141, gnl|Mm7|chr8 (103905690-103905830) | |
| 1-141, gnl|monDom2|scaffold_23 (19694726-19694560) | |
| 1-141, gnl|oryCun1|scaffold_200187 (34074-34238) | |
| 1-141, gnl|panTro1|chr18 (60052413-60052580) | |
| 1-141, gnl|rheMac2|chr20 (65500706-65500872) | |
| 1-141, gnl|rn3|chr19 (35126098-35126264) | |
| 1-141, gnl|tetNig1|chr13 (1019138-1018971) | |
| 390-537, gnl|bosTau2|chr18 (28384251-28384398) | |
| 390-537, gnl|canFam2|chr5 (85174704-85174562) | |
| 390-537, gnl|danRer3|chrUn (77560037-77560168) | |
| 390-537, gnl|dasNov1|scaffold_46841 (6300-6442) | |
| 390-537, gnl|fr1|chrUn (216313019-216312888) | |
| 390-537, gnl|hg17|chr16 (65793142-65793284) | |
| 390-537, gnl|Hg17|chr16 (65793142-65793291) | |
| 390-537, gnl|mm7|chr8 (103906437-103906579) | |
| 390-537, gnl|Mm7|chr8 (103906437-103906584) | |
| 390-537, gnl|monDom2|scaffold_23 (19693626-19693484) | |
| 390-537, gnl|oryCun1|scaffold_200187 (34840-34970) | |
| 390-537, gnl|panTro1|chr18 (60053499-60053641) | |
| 390-537, gnl|rheMac2|chr20 (65501477-65501619) | |
| 390-537, gnl|rn3|chr19 (35126867-35127009) | |
| 390-537, gnl|tetNig1|chr13 (1018094-1017963) | |
| 390-537, gnl|xenTro1|scaffold_264 (752314-752175) | |
| 627-737, gnl|bosTau2|chr18 (28384708-28384818) | |
| 627-737, gnl|canFam2|chr5 (85174277-85174151) | |
| 627-737, gnl|danRer3|chrUn (77563176-77563295) | |
| 627-737, gnl|dasNov1|scaffold_23202 (18865-18991) | |
| 627-737, gnl|echTel1|scaffold_236001 (156-274) | |
| 627-737, gnl|fr1|chrUn (216312613-216312496) | |
| 627-737, gnl|galGal2|chr11 (989777-989897) | |
| 627-737, gnl|hg17|chr16 (65793575-65793695) | |
| 627-737, gnl|Hg17|chr16 (65793579-65793689) | |
| 627-737, gnl|loxAfr1|scaffold_92471 (9647-9521) | |
| 627-737, gnl|mm7|chr8 (103906860-103906986) | |
| 627-737, gnl|Mm7|chr8 (103906870-103906980) | |
| 627-737, gnl|monDom2|scaffold_23 (19693220-19693100) | |
| 627-737, gnl|oryCun1|scaffold_200187 (35235-35361) | |
| 627-737, gnl|panTro1|chr18 (60053932-60054052) | |
| 627-737, gnl|rheMac2|chr10 (18108694-18108815) | |
| 627-737, gnl|rn3|chr19 (35127292-35127418) | |
| 627-737, gnl|tetNig1|chr13 (1017706-1017586) | |
| 627-737, gnl|xenTro1|scaffold_264 (750033-749913) | |
| 763-877, gnl|bosTau2|chr13 (55127938-55127824) | |
| 763-877, gnl|canFam2|chr24 (36581181-36581344) | |
| 763-877, gnl|danRer3|chr2 (21209257-21209099) | |
| 763-877, gnl|dasNov1|scaffold_23202 (19596-19433) | |
| 763-877, gnl|echTel1|scaffold_276704 (10835-10997) | |
| 763-877, gnl|fr1|chrUn (3836816-3836977) | |
| 763-877, gnl|galGal2|chr20 (10251615-10251776) | |
| 763-877, gnl|hg17|chr20 (44435438-44435601) | |
| 763-877, gnl|Hg17|chr20 (44435555-44435441) | |
| 763-877, gnl|loxAfr1|scaffold_92471 (8968-9131) | |
| 763-877, gnl|mm7|chr2 (165037488-165037647) | |
| 763-877, gnl|Mm7|chr2 (165037605-165037491) | |
| 763-877, gnl|monDom2|scaffold_35 (25837504-25837668) | |
| 763-877, gnl|oryCun1|scaffold_164048 (10019-10182) | |
| 763-877, gnl|panTro1|chr21 (46964809-46964972) | |
| 763-877, gnl|rheMac2|chr10 (18109758-18109595) | |
| 763-877, gnl|rn3|chr3 (156243376-156243535) | |
| 763-877, gnl|tetNig1|chr11 (8970720-8970883) | |
| 763-877, gnl|xenTro1|scaffold_316 (568801-568652) | |
| 1038-1212, gnl|bosTau2|chr18 (28385424-28385598) | |
| 1038-1212, gnl|canFam2|chr5 (85173541-85173423) | |
| 1038-1212, gnl|danRer3|chrUn (77576402-77576520) | |
| 1038-1212, gnl|dasNov1|scaffold_46841 (7467-7585) | |
| 1038-1212, gnl|echTel1|scaffold_236001 (874-992) | |
| 1038-1212, gnl|fr1|chrUn (216310442-216310324) | |
| 1038-1212, gnl|galGal2|chr11 (990538-990655) | |
| 1038-1212, gnl|hg17|chr16 (65794293-65794411) | |
| 1038-1212, gnl|Hg17|chr16 (65794296-65794490) | |
| 1038-1212, gnl|loxAfr1|scaffold_9166 (67045-67163) | |
| 1038-1212, gnl|mm7|chr8 (103907558-103907676) | |
| 1038-1212, gnl|Mm7|chr8 (103907561-103907731) | |
| 1038-1212, gnl|monDom2|scaffold_23 (19692050-19691933) | |
| 1038-1212, gnl|oryCun1|scaffold_200187 (35942-36060) | |
| 1038-1212, gnl|panTro1|chr18 (60054650-60054768) | |
| 1038-1212, gnl|rheMac2|chr20 (65502623-65502741) | |
| 1038-1212, gnl|rn3|chr19 (35128002-35128120) | |
| 1038-1212, gnl|tetNig1|chr13 (1015356-1015238) | |
| 1038-1212, gnl|xenTro1|scaffold_264 (747446-747328) |
| Aligned organism(s): 90 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-141, gnl|bosTau2|chr18 (28383479-28383619) | |
| 1-141, gnl|canFam2|chr5 (85175523-85175356) | |
| 1-141, gnl|danRer3|chr2 (21205930-21206096) | |
| 1-141, gnl|dasNov1|scaffold_46841 (5518-5684) | |
| 1-141, gnl|fr1|chrUn (216314613-216314447) | |
| 1-141, gnl|galGal2|chr11 (988160-988333) | |
| 1-141, gnl|hg17|chr16 (65792053-65792219) | |
| 1-141, gnl|Hg17|chr16 (65792073-65792213) | |
| 1-141, gnl|loxAfr1|scaffold_9166 (65009-65160) | |
| 1-141, gnl|mm7|chr8 (103905670-103905836) | |
| 1-141, gnl|Mm7|chr8 (103905690-103905830) | |
| 1-141, gnl|monDom2|scaffold_23 (19694726-19694560) | |
| 1-141, gnl|oryCun1|scaffold_200187 (34074-34238) | |
| 1-141, gnl|panTro1|chr18 (60052413-60052580) | |
| 1-141, gnl|rheMac2|chr20 (65500706-65500872) | |
| 1-141, gnl|rn3|chr19 (35126098-35126264) | |
| 1-141, gnl|tetNig1|chr13 (1019138-1018971) | |
| 390-537, gnl|bosTau2|chr18 (28384251-28384398) | |
| 390-537, gnl|canFam2|chr5 (85174704-85174562) | |
| 390-537, gnl|danRer3|chrUn (77560037-77560168) | |
| 390-537, gnl|dasNov1|scaffold_46841 (6300-6442) | |
| 390-537, gnl|fr1|chrUn (216313019-216312888) | |
| 390-537, gnl|hg17|chr16 (65793142-65793284) | |
| 390-537, gnl|Hg17|chr16 (65793142-65793291) | |
| 390-537, gnl|mm7|chr8 (103906437-103906579) | |
| 390-537, gnl|Mm7|chr8 (103906437-103906584) | |
| 390-537, gnl|monDom2|scaffold_23 (19693626-19693484) | |
| 390-537, gnl|oryCun1|scaffold_200187 (34840-34970) | |
| 390-537, gnl|panTro1|chr18 (60053499-60053641) | |
| 390-537, gnl|rheMac2|chr20 (65501477-65501619) | |
| 390-537, gnl|rn3|chr19 (35126867-35127009) | |
| 390-537, gnl|tetNig1|chr13 (1018094-1017963) | |
| 390-537, gnl|xenTro1|scaffold_264 (752314-752175) | |
| 627-737, gnl|bosTau2|chr18 (28384708-28384818) | |
| 627-737, gnl|canFam2|chr5 (85174277-85174151) | |
| 627-737, gnl|danRer3|chrUn (77563176-77563295) | |
| 627-737, gnl|dasNov1|scaffold_23202 (18865-18991) | |
| 627-737, gnl|echTel1|scaffold_236001 (156-274) | |
| 627-737, gnl|fr1|chrUn (216312613-216312496) | |
| 627-737, gnl|galGal2|chr11 (989777-989897) | |
| 627-737, gnl|hg17|chr16 (65793575-65793695) | |
| 627-737, gnl|Hg17|chr16 (65793579-65793689) | |
| 627-737, gnl|loxAfr1|scaffold_92471 (9647-9521) | |
| 627-737, gnl|mm7|chr8 (103906860-103906986) | |
| 627-737, gnl|Mm7|chr8 (103906870-103906980) | |
| 627-737, gnl|monDom2|scaffold_23 (19693220-19693100) | |
| 627-737, gnl|oryCun1|scaffold_200187 (35235-35361) | |
| 627-737, gnl|panTro1|chr18 (60053932-60054052) | |
| 627-737, gnl|rheMac2|chr10 (18108694-18108815) | |
| 627-737, gnl|rn3|chr19 (35127292-35127418) | |
| 627-737, gnl|tetNig1|chr13 (1017706-1017586) | |
| 627-737, gnl|xenTro1|scaffold_264 (750033-749913) | |
| 763-877, gnl|bosTau2|chr13 (55127938-55127824) | |
| 763-877, gnl|canFam2|chr24 (36581181-36581344) | |
| 763-877, gnl|danRer3|chr2 (21209257-21209099) | |
| 763-877, gnl|dasNov1|scaffold_23202 (19596-19433) | |
| 763-877, gnl|echTel1|scaffold_276704 (10835-10997) | |
| 763-877, gnl|fr1|chrUn (3836816-3836977) | |
| 763-877, gnl|galGal2|chr20 (10251615-10251776) | |
| 763-877, gnl|hg17|chr20 (44435438-44435601) | |
| 763-877, gnl|Hg17|chr20 (44435555-44435441) | |
| 763-877, gnl|loxAfr1|scaffold_92471 (8968-9131) | |
| 763-877, gnl|mm7|chr2 (165037488-165037647) | |
| 763-877, gnl|Mm7|chr2 (165037605-165037491) | |
| 763-877, gnl|monDom2|scaffold_35 (25837504-25837668) | |
| 763-877, gnl|oryCun1|scaffold_164048 (10019-10182) | |
| 763-877, gnl|panTro1|chr21 (46964809-46964972) | |
| 763-877, gnl|rheMac2|chr10 (18109758-18109595) | |
| 763-877, gnl|rn3|chr3 (156243376-156243535) | |
| 763-877, gnl|tetNig1|chr11 (8970720-8970883) | |
| 763-877, gnl|xenTro1|scaffold_316 (568801-568652) | |
| 1038-1212, gnl|bosTau2|chr18 (28385424-28385598) | |
| 1038-1212, gnl|canFam2|chr5 (85173541-85173423) | |
| 1038-1212, gnl|danRer3|chrUn (77576402-77576520) | |
| 1038-1212, gnl|dasNov1|scaffold_46841 (7467-7585) | |
| 1038-1212, gnl|echTel1|scaffold_236001 (874-992) | |
| 1038-1212, gnl|fr1|chrUn (216310442-216310324) | |
| 1038-1212, gnl|galGal2|chr11 (990538-990655) | |
| 1038-1212, gnl|hg17|chr16 (65794293-65794411) | |
| 1038-1212, gnl|Hg17|chr16 (65794296-65794490) | |
| 1038-1212, gnl|loxAfr1|scaffold_9166 (67045-67163) | |
| 1038-1212, gnl|mm7|chr8 (103907558-103907676) | |
| 1038-1212, gnl|Mm7|chr8 (103907561-103907731) | |
| 1038-1212, gnl|monDom2|scaffold_23 (19692050-19691933) | |
| 1038-1212, gnl|oryCun1|scaffold_200187 (35942-36060) | |
| 1038-1212, gnl|panTro1|chr18 (60054650-60054768) | |
| 1038-1212, gnl|rheMac2|chr20 (65502623-65502741) | |
| 1038-1212, gnl|rn3|chr19 (35128002-35128120) | |
| 1038-1212, gnl|tetNig1|chr13 (1015356-1015238) | |
| 1038-1212, gnl|xenTro1|scaffold_264 (747446-747328) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |