Non-Coding RNA Search

Ss1.1-Pig4-TMW8031B06.3

Sequence:


               
               ACATGAGTGAGTGTCTGCATGTGTGGGGGCTGAAGTTCCTATTTGGGGAACGTCTCACAT
TCTGAAGGGTGTTTGCATGAAGTGAAAACAGACTTCCTTTAATTCAGAACAAAGAACAAA
CCGACTAGGATCCCTGCTGTCTCAACTGAAATGGTTCCTCATAGGCCCGGGTGTTCTTGT
TGAGCTGGAGGCTGTGGGGTCGACTGCCTTCGGTCCATGTGCCAAGTTCCTATGTTTAGC
TATCGCTGTATTTGTATGCTTTCAAAGTTCAAGTGCAGAAGTCATCTTGCTGAACTTGTG
GCCAAACTAATCCACGAAAATCCAAAGAAGCCAAAAATAAAAAAATAAAAATAACTGAGG
TTCCATCTTTTAAATGGGAAGTTTTTAATAAAAAGAAAGATATATTCTTCTTGAAGATAA
GTGGGAATGTACCTTAAATTCTCCTCTTTCCCTCCCTTTCTTACATGCTCTTCCCTTTTC
AGCCTTAATATTTAGCTTCTGTTTGGGAAATGAGCCACAAAACCAACAGGGCACTGACCT
TAGGTCTCAGGGGCTCCTGGGTATCTTGGCTGGGAGCCTGGGCTATTGCTTCTCCCTTGT
GTCCCCACAGCTGGTGCTGGGCCCCAGTGGTGTGCTGCAAGGGATCCGCCCTGGGAAGTG
CTACGTGGACATGTCAACAGTGGACGCTGACACGGTCACCGAGTTGGCCCAGGTAGCGGC
CTCATTCAGGTTGGCCCTCCGGCATCCTTTCACTTGGAGCCCAAGACCCAGGCTGGCCAC
ACCCCCAAGTGTGGGCAGCTTGATTACTGCAGAGCCAAAGCGGCAGAGAAGAGGAGAGGC
CAGTAGCCTTGCCACTAGCCTGGCTTCACCCTCAGAGCTCTAGCTGGTCTGAGTGGCTGT
GAGAGGAGAGTTGCTTCCTGGCTGGGACAGGCATCAGGTCCTGTAGCTGCCAGCCTCACA
GTCAGAAGCAGTCCAGGCTGCCAGCAGGGCCTATCTGGCTTAAGCAGCTTTCTGCAGTCG
GTTCTAGCAGGGCCCCACCTCCCCGAGCTGCTGGGCCCATGTGACGGGGTGATGCCAGGC
AGCCTATGTGTGTCCTAAGTGCCAAATGAAACTGAGGAAGGGCGGTGTGTGTAGGAGGAG
TGGTTGGCCAAGCCATGGGCGTGATCATGTTGGTTATAGTCTCGTCTTTGTAAGAAATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATGAGTGAGTGTCTGCATGTGTGGGGGCTGAAGTTCCTATTTGGGGAACGTCTCACAT
TCTGAAGGGTGTTTGCATGAAGTGAAAACAGACTTCCTTTAATTCAGAACAAAGAACAAA
CCGACTAGGATCCCTGCTGTCTCAACTGAAATGGTTCCTCATAGGCCCGGGTGTTCTTGT
TGAGCTGGAGGCTGTGGGGTCGACTGCCTTCGGTCCATGTGCCAAGTTCCTATGTTTAGC
TATCGCTGTATTTGTATGCTTTCAAAGTTCAAGTGCAGAAGTCATCTTGCTGAACTTGTG
GCCAAACTAATCCACGAAAATCCAAAGAAGCCAAAAATAAAAAAATAAAAATAACTGAGG
TTCCATCTTTTAAATGGGAAGTTTTTAATAAAAAGAAAGATATATTCTTCTTGAAGATAA
GTGGGAATGTACCTTAAATTCTCCTCTTTCCCTCCCTTTCTTACATGCTCTTCCCTTTTC
AGCCTTAATATTTAGCTTCTGTTTGGGAAATGAGCCACAAAACCAACAGGGCACTGACCT
TAGGTCTCAGGGGCTCCTGGGTATCTTGGCTGGGAGCCTGGGCTATTGCTTCTCCCTTGT
GTCCCCACAGCTGGTGCTGGGCCCCAGTGGTGTGCTGCAAGGGATCCGCCCTGGGAAGTG
CTACGTGGACATGTCAACAGTGGACGCTGACACGGTCACCGAGTTGGCCCAGGTAGCGGC
CTCATTCAGGTTGGCCCTCCGGCATCCTTTCACTTGGAGCCCAAGACCCAGGCTGGCCAC
ACCCCCAAGTGTGGGCAGCTTGATTACTGCAGAGCCAAAGCGGCAGAGAAGAGGAGAGGC
CAGTAGCCTTGCCACTAGCCTGGCTTCACCCTCAGAGCTCTAGCTGGTCTGAGTGGCTGT
GAGAGGAGAGTTGCTTCCTGGCTGGGACAGGCATCAGGTCCTGTAGCTGCCAGCCTCACA
GTCAGAAGCAGTCCAGGCTGCCAGCAGGGCCTATCTGGCTTAAGCAGCTTTCTGCAGTCG
GTTCTAGCAGGGCCCCACCTCCCCGAGCTGCTGGGCCCATGTGACGGGGTGATGCCAGGC
AGCCTATGTGTGTCCTAAGTGCCAAATGAAACTGAGGAAGGGCGGTGTGTGTAGGAGGAG
TGGTTGGCCAAGCCATGGGCGTGATCATGTTGGTTATAGTCTCGTCTTTGTAAGAAATTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               629-748, + strand, RNAz p=0.507818

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               629-748, + strand, RNAz p=0.507818

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-1178, gnl|bosTau2|chr25 (4713416-4712256)
               

               
               5-1178, gnl|Hg17|chr16 (4804454-4803293)
               

               
               5-1178, gnl|Mm7|chr16 (4694618-4693214)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1178, gnl|bosTau2|chr25 (4713416-4712256)
               

               
               5-1178, gnl|Hg17|chr16 (4804454-4803293)
               

               
               5-1178, gnl|Mm7|chr16 (4694618-4693214)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	5-1178, gnl\|bosTau2\|chr25 (4713416-4712256)
	5-1178, gnl\|Hg17\|chr16 (4804454-4803293)
	5-1178, gnl\|Mm7\|chr16 (4694618-4693214)