Non-Coding RNA Search

Ss1.1-Pig4-TMW8031B09.5

Sequence:


               
               GGAGAAAGTAAGAAGGAACAAGAATTTCCCACCGGCTCTACGGGAGAAAAATCAAATTGT
ATTTGCCACAAGGGACATGAATTTATTCCCACTCTCTACCATTTCCCAACCAACTGTGAG
GCCTGTATGAAGCCGTTGTGGCACATGTTTAAACCTCCTCCTGCTTTGGAGTGCCGTCGC
TGCCATATTAAATGTCATAAAGATCACATGGATAAAAAGGAGGAAATTATAGCACCCTGC
AAAGTGTACTATGACATTTCATCGGCAAAGAATCTATTATTATTAGCAAATTCTACAGAA
GAGCAGCAAAAGTGGGTTAGTCGGTTAGTGAAAAAGATACCTAAGAAGCCTCCAGCTCCA
GACCCTTTTGCACGGTCATCTCCTAGGACATCAATGAAAATACAACAAAACCAGTCTATC
AGACGGCCAAGTCGACAGCTTGCCGCAAACAAACCAAGCTAACTGCCTTCTGTGAATGCA
GTCATTAGTCAAGGTGATCATATTCTTCCAGCTGAAACAAGACTGAAATATGGTGGCCCA
AAATTTATTAACACAAGCTATATTTTCTTGAGAGACTGATAAACACATACATATATATGT
TTCCTTTATTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAAAGTAAGAAGGAACAAGAATTTCCCACCGGCTCTACGGGAGAAAAATCAAATTGT
ATTTGCCACAAGGGACATGAATTTATTCCCACTCTCTACCATTTCCCAACCAACTGTGAG
GCCTGTATGAAGCCGTTGTGGCACATGTTTAAACCTCCTCCTGCTTTGGAGTGCCGTCGC
TGCCATATTAAATGTCATAAAGATCACATGGATAAAAAGGAGGAAATTATAGCACCCTGC
AAAGTGTACTATGACATTTCATCGGCAAAGAATCTATTATTATTAGCAAATTCTACAGAA
GAGCAGCAAAAGTGGGTTAGTCGGTTAGTGAAAAAGATACCTAAGAAGCCTCCAGCTCCA
GACCCTTTTGCACGGTCATCTCCTAGGACATCAATGAAAATACAACAAAACCAGTCTATC
AGACGGCCAAGTCGACAGCTTGCCGCAAACAAACCAAGCTAACTGCCTTCTGTGAATGCA
GTCATTAGTCAAGGTGATCATATTCTTCCAGCTGAAACAAGACTGAAATATGGTGGCCCA
AAATTTATTAACACAAGCTATATTTTCTTGAGAGACTGATAAACACATACATATATATGT
TTCCTTTATTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-159, + strand, RNAz p=0.514446

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, + strand, RNAz p=0.514446

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-244, gnl|bosTau2|chr11 (65375559-65375802)
               

               
               1-244, gnl|canFam2|chr17 (10915076-10915369)
               

               
               1-244, gnl|danRer3|chrNA (58694839-58694546)
               

               
               1-244, gnl|dasNov1|scaffold_6521 (6446-6735)
               

               
               1-244, gnl|echTel1|scaffold_130510 (1207-939)
               

               
               1-244, gnl|fr1|chrUn (263022086-263022378)
               

               
               1-244, gnl|galGal2|chr3 (95436816-95437094)
               

               
               1-244, gnl|hg17|chr2 (11283148-11283441)
               

               
               1-244, gnl|Hg17|chr2 (11283418-11283175)
               

               
               1-244, gnl|loxAfr1|scaffold_19155 (36089-35809)
               

               
               1-244, gnl|mm7|chr12 (17032416-17032124)
               

               
               1-244, gnl|Mm7|chr12 (17032145-17032388)
               

               
               1-244, gnl|monDom2|scaffold_1 (97043463-97043186)
               

               
               1-244, gnl|oryCun1|scaffold_206093 (90705-90412)
               

               
               1-244, gnl|panTro1|chr12 (12000156-12000449)
               

               
               1-244, gnl|rheMac2|chr13 (11271703-11271996)
               

               
               1-244, gnl|rn3|chr6 (40669909-40669616)
               

               
               1-244, gnl|tetNig1|chr10 (1211330-1211032)
               

               
               1-244, gnl|xenTro1|scaffold_1042 (141715-142002)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-244, gnl|bosTau2|chr11 (65375559-65375802)
               

               
               1-244, gnl|canFam2|chr17 (10915076-10915369)
               

               
               1-244, gnl|danRer3|chrNA (58694839-58694546)
               

               
               1-244, gnl|dasNov1|scaffold_6521 (6446-6735)
               

               
               1-244, gnl|echTel1|scaffold_130510 (1207-939)
               

               
               1-244, gnl|fr1|chrUn (263022086-263022378)
               

               
               1-244, gnl|galGal2|chr3 (95436816-95437094)
               

               
               1-244, gnl|hg17|chr2 (11283148-11283441)
               

               
               1-244, gnl|Hg17|chr2 (11283418-11283175)
               

               
               1-244, gnl|loxAfr1|scaffold_19155 (36089-35809)
               

               
               1-244, gnl|mm7|chr12 (17032416-17032124)
               

               
               1-244, gnl|Mm7|chr12 (17032145-17032388)
               

               
               1-244, gnl|monDom2|scaffold_1 (97043463-97043186)
               

               
               1-244, gnl|oryCun1|scaffold_206093 (90705-90412)
               

               
               1-244, gnl|panTro1|chr12 (12000156-12000449)
               

               
               1-244, gnl|rheMac2|chr13 (11271703-11271996)
               

               
               1-244, gnl|rn3|chr6 (40669909-40669616)
               

               
               1-244, gnl|tetNig1|chr10 (1211330-1211032)
               

               
               1-244, gnl|xenTro1|scaffold_1042 (141715-142002)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fat (0.147427)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)

	1-244, gnl\|bosTau2\|chr11 (65375559-65375802)
	1-244, gnl\|canFam2\|chr17 (10915076-10915369)
	1-244, gnl\|danRer3\|chrNA (58694839-58694546)
	1-244, gnl\|dasNov1\|scaffold_6521 (6446-6735)
	1-244, gnl\|echTel1\|scaffold_130510 (1207-939)
	1-244, gnl\|fr1\|chrUn (263022086-263022378)
	1-244, gnl\|galGal2\|chr3 (95436816-95437094)
	1-244, gnl\|hg17\|chr2 (11283148-11283441)
	1-244, gnl\|Hg17\|chr2 (11283418-11283175)
	1-244, gnl\|loxAfr1\|scaffold_19155 (36089-35809)
	1-244, gnl\|mm7\|chr12 (17032416-17032124)
	1-244, gnl\|Mm7\|chr12 (17032145-17032388)
	1-244, gnl\|monDom2\|scaffold_1 (97043463-97043186)
	1-244, gnl\|oryCun1\|scaffold_206093 (90705-90412)
	1-244, gnl\|panTro1\|chr12 (12000156-12000449)
	1-244, gnl\|rheMac2\|chr13 (11271703-11271996)
	1-244, gnl\|rn3\|chr6 (40669909-40669616)
	1-244, gnl\|tetNig1\|chr10 (1211330-1211032)
	1-244, gnl\|xenTro1\|scaffold_1042 (141715-142002)