Non-Coding RNA Search

Ss1.1-Pig4-TMW8031B12.3

Sequence:


               
               GTTTTGGATTTTAGGACTTTTTTCTTATTTAAAAGTATTGAGTATGTTAAGAATATAGTT
TCGAATGTCAGTCATTAACAACACATATTGCAGCTGCATACAGAGAACCTTCTGTGCCTT
TTTGCCTGCAGTAAGCATTCATTTCTGTTTTACATGCGCTATAAGGATATTGATGATTAC
TGCACCTTGTTCTTCTGTAAATAGACTTGATTAAGGATTTTTTTTTAAAAGCAAGGGTCA
GTTCATTAATAGGTAGATACCTTAGAAAACAGTAAACATGAGAGGAGGTATCAGATATAG
GTCTTTGGAGCCCAGCCTTTTCCCTGTTTAGTGAGCAAGAAACTCCTTTGGAATGTAGTC
ATTTGTGTGTATGTGTGTGTACATATATGTATAAATAGTTATTTAAATACGTAAATGTAA
AATTCAGCATCACATTGGTGTGATGATAAATAGTACGGTGCTAGGTGGTTACATTAAAAG
CACAGCAGAGTGTATAATCAGTCACTGCGACTGGTGGGTTTTTGTAAACTAGGTTCAGTT
TTTGAACCCCCCCCAGAATACCTCATGTGTAAATATATTGGTCATGACTTAATTGAAATA
CAGTTATTGTAAAAAGAATGTGAAGCCACTGGTTGGCTTATTATGCCTTCTGATGTATAT
CATTCTTGCCTCTTTTTTTGTAAAGGGGTGGTTTTTGTTTTTTAATAGGGTTTACAGCTA
GAATTTTGAATGCCAAAGTTATATTTATTAAATAAAAAAAAGTTTTCAATGTTAATGGCT
AAGTATTTTTCCACTGGACTATTGTTTGTTGATGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTGGATTTTAGGACTTTTTTCTTATTTAAAAGTATTGAGTATGTTAAGAATATAGTT
TCGAATGTCAGTCATTAACAACACATATTGCAGCTGCATACAGAGAACCTTCTGTGCCTT
TTTGCCTGCAGTAAGCATTCATTTCTGTTTTACATGCGCTATAAGGATATTGATGATTAC
TGCACCTTGTTCTTCTGTAAATAGACTTGATTAAGGATTTTTTTTTAAAAGCAAGGGTCA
GTTCATTAATAGGTAGATACCTTAGAAAACAGTAAACATGAGAGGAGGTATCAGATATAG
GTCTTTGGAGCCCAGCCTTTTCCCTGTTTAGTGAGCAAGAAACTCCTTTGGAATGTAGTC
ATTTGTGTGTATGTGTGTGTACATATATGTATAAATAGTTATTTAAATACGTAAATGTAA
AATTCAGCATCACATTGGTGTGATGATAAATAGTACGGTGCTAGGTGGTTACATTAAAAG
CACAGCAGAGTGTATAATCAGTCACTGCGACTGGTGGGTTTTTGTAAACTAGGTTCAGTT
TTTGAACCCCCCCCAGAATACCTCATGTGTAAATATATTGGTCATGACTTAATTGAAATA
CAGTTATTGTAAAAAGAATGTGAAGCCACTGGTTGGCTTATTATGCCTTCTGATGTATAT
CATTCTTGCCTCTTTTTTTGTAAAGGGGTGGTTTTTGTTTTTTAATAGGGTTTACAGCTA
GAATTTTGAATGCCAAAGTTATATTTATTAAATAAAAAAAAGTTTTCAATGTTAATGGCT
AAGTATTTTTCCACTGGACTATTGTTTGTTGATGTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               385-579, - strand, RNAz p=0.857247
               

               
               610-717, + strand, RNAz p=0.647819

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               385-579, - strand, RNAz p=0.857247
               

               
               610-717, + strand, RNAz p=0.647819

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-816, gnl|bosTau2|chr9 (16169179-16168367)
               

               
               1-816, gnl|Hg17|chr6 (118889487-118888669)
               

               
               1-816, gnl|Mm7|chr10 (53091323-53090541)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-816, gnl|bosTau2|chr9 (16169179-16168367)
               

               
               1-816, gnl|Hg17|chr6 (118889487-118888669)
               

               
               1-816, gnl|Mm7|chr10 (53091323-53090541)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ssp (0.13552)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

	385-579, - strand, RNAz p=0.857247
	610-717, + strand, RNAz p=0.647819

	1-816, gnl\|bosTau2\|chr9 (16169179-16168367)
	1-816, gnl\|Hg17\|chr6 (118889487-118888669)
	1-816, gnl\|Mm7\|chr10 (53091323-53090541)