Non-Coding RNA Search

Ss1.1-Pig4-TMW8031B13.3

Sequence:


               
               CGGCGCCAGGCTGCCGGGCCGGGCTCCGGGGGACCGAGACTGTGCCTTCCAGCCGTCAGC
CCCAGCGCCTTCCAAGCCCTTTTTTCTGAGCGCCCCTCCATTCTACCCGGCGTGCTGCGG
TGGGTCCTGTCGGCGCCCTGCATCCCCCACTGCTTTTCCAAGAGAAGAGAGTGTGCTGCC
TCTTCTGACCCAGGAATCTAATTCCAAAGCTCGAAGGGGTATTTTAAGAAGAGCTGTCTT
TTCTGAGGACCAGAGAAAGGCTTTGGAGAAAATGTTTCAGAAGCAGAAATATATCAGCAA
AACAGACCGAAAGAAACTTGCCATCAGCTTGGGACTAAAGGAATCACAGGTGAAAATATG
GTTTCAGAACAGAAGGATGAAATGGCGGAATTCCAAAGAAAAGGAAGTGCTTTCCAACAG
GTGTATCCAAGAAGTTGTCCTTCAAGAGGACCCCCTGTCACGATCGGCGCTGGGTTTCCC
TTCGCCGTGCCCTTCCCTCTGGGAAGTCTCTCAACGTCACTCGAGTCCCAGATGGAGGGA
GAATTCACCAGAACCTTCTGAGAGACCAATCCAGGAGAGTCCGGGGCCGCTGCCCCCAGA
AGCCAAGTCACTGCAAGGCGCCCTGTATTTGTGTTCTGAAGAGGAAGCCGGAGACAAGTG
TGTCCTTCCTGCAGTGTGAATGGAAGCCTTCTGCCATGTTAATTTTAAAGAACGCTTAAC
TAACAGTGTTTGGACTCTAAAGCCTGCTAGCTTGTGCCTCACCAGTGCCTAAAACCTAAC
ACCTGTGGAGTGAAGCGTACACTAACATTTTAGGAAACCCTCTCCAGTGTTCTCTTCTTT
GGGTCCTAGACGCAGACTTAATTTGTAAATGGAACAGAATCTCCCAGAAAGTACGATGGA
ATTGAAAAGACTGAGGATAGTAGTTGGCTCAGTCTGTGCTCTGAGTATATGTATATATGC
GTCTCTATGTGTGTATGTATATATATAAATATTCATTAAAATACAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCGCCAGGCTGCCGGGCCGGGCTCCGGGGGACCGAGACTGTGCCTTCCAGCCGTCAGC
CCCAGCGCCTTCCAAGCCCTTTTTTCTGAGCGCCCCTCCATTCTACCCGGCGTGCTGCGG
TGGGTCCTGTCGGCGCCCTGCATCCCCCACTGCTTTTCCAAGAGAAGAGAGTGTGCTGCC
TCTTCTGACCCAGGAATCTAATTCCAAAGCTCGAAGGGGTATTTTAAGAAGAGCTGTCTT
TTCTGAGGACCAGAGAAAGGCTTTGGAGAAAATGTTTCAGAAGCAGAAATATATCAGCAA
AACAGACCGAAAGAAACTTGCCATCAGCTTGGGACTAAAGGAATCACAGGTGAAAATATG
GTTTCAGAACAGAAGGATGAAATGGCGGAATTCCAAAGAAAAGGAAGTGCTTTCCAACAG
GTGTATCCAAGAAGTTGTCCTTCAAGAGGACCCCCTGTCACGATCGGCGCTGGGTTTCCC
TTCGCCGTGCCCTTCCCTCTGGGAAGTCTCTCAACGTCACTCGAGTCCCAGATGGAGGGA
GAATTCACCAGAACCTTCTGAGAGACCAATCCAGGAGAGTCCGGGGCCGCTGCCCCCAGA
AGCCAAGTCACTGCAAGGCGCCCTGTATTTGTGTTCTGAAGAGGAAGCCGGAGACAAGTG
TGTCCTTCCTGCAGTGTGAATGGAAGCCTTCTGCCATGTTAATTTTAAAGAACGCTTAAC
TAACAGTGTTTGGACTCTAAAGCCTGCTAGCTTGTGCCTCACCAGTGCCTAAAACCTAAC
ACCTGTGGAGTGAAGCGTACACTAACATTTTAGGAAACCCTCTCCAGTGTTCTCTTCTTT
GGGTCCTAGACGCAGACTTAATTTGTAAATGGAACAGAATCTCCCAGAAAGTACGATGGA
ATTGAAAAGACTGAGGATAGTAGTTGGCTCAGTCTGTGCTCTGAGTATATGTATATATGC
GTCTCTATGTGTGTATGTATATATATAAATATTCATTAAAATACAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|545752|gb|AAB30099.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|545752|gb|AAB30099.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               388-507, - strand, RNAz p=0.723293

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               388-507, - strand, RNAz p=0.723293

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               348-1005, gnl|bosTau2|chr14 (33181980-33181299)
               

               
               348-1005, gnl|Hg17|chr12 (43696670-43696010)
               

               
               348-1005, gnl|Mm7|chr15 (95626090-95625452)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               348-1005, gnl|bosTau2|chr14 (33181980-33181299)
               

               
               348-1005, gnl|Hg17|chr12 (43696670-43696010)
               

               
               348-1005, gnl|Mm7|chr15 (95626090-95625452)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)

	348-1005, gnl\|bosTau2\|chr14 (33181980-33181299)
	348-1005, gnl\|Hg17\|chr12 (43696670-43696010)
	348-1005, gnl\|Mm7\|chr15 (95626090-95625452)