Non-Coding RNA Search

Ss1.1-Pig4-TMW8031B15.5

Sequence:


               
               CCTGTAATCTACTATGTCCCTGACTTCATCTCCAAGGAAGAGGAGGAGTATTTGCTTCGA
CAGGTCTTCAATGCCCCAAAGCCAAAGTGGACCCAGCTTTCCGGGAGGAAGTTACAGAAC
TGGGGTGGGCTCCCCCATCCCCGGGGGATGGTTCCTGAGCGGCTGCCACCCAGCCCTGGA
ACCATACAGGGTAAAGTGTCTGACACCTGTAATCTACTATGTCCCTGACTTCATCTCCAA
GGAAGAGGAGGAGTATTTGCTTCGACAGGTCTTCAATGCCCCAAAGCCAAAGTGGACCCA
GCTTTCCGGGAGGAAGTTACAGAACTGGGGTGGGCTCCCCCATCCCCGGGGGATGGTTCC
TGAGCGGCTGCCACCGTGGCTCCAGCGCTATGTGGACAAAGTGTCTGACCTCAGCCTTTT
TGGGGGTCTCCCAGCCAACCACGTCCTTGTGAACCAGTATCTGCCTGGGGAGGGCATCAT
GCCCCACGAGGACGGGCCACTCTACTACCCGACCGTCAGCACCATCAGCTTGGGCTCCCA
CACCATGCTGGACCTCTACGAGCCTCGGCAGCCAGAGGATGATGACCCTACAGAGCAGCC
CCGGCCCCCGCCCCGGCCGGCCACCTCGCTGCTGCTTGAACCCCGCAGCCTGCTGGTGCT
CCGTGGCACCGCCTACACGCGCTTCCTCCATGGCATAGCAGCCGCCCGCATAGACGCTCT
GGACGCAGTCTCCCTGCCGCCCAACGCAGCCGCCTGCCCCTCGGCGCAGCCCGGAGCGCG
CCTGGTCCGCGGCACCCGCATCTCGCTGACCATCCGCCGCGTGCCCCGCGTGCTGCGCGC
TAGCCTCCTGCTCAGCAAGTGACTCCAGGCCCTCGGACCCGCTCAGATTCCTGAGCTCTC
GCCTGCTCTGGACAACTACCGCCCTGTGACCTTGGAACCCTGGGGCAGAGGCGGCTCCCG
CGGGTTATTTTCCTTGTAACTGTGTGGGAACCACAGGAAAAGGCCCCATTCCAAATAAAC
AACTACAAAATCTTCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGTAATCTACTATGTCCCTGACTTCATCTCCAAGGAAGAGGAGGAGTATTTGCTTCGA
CAGGTCTTCAATGCCCCAAAGCCAAAGTGGACCCAGCTTTCCGGGAGGAAGTTACAGAAC
TGGGGTGGGCTCCCCCATCCCCGGGGGATGGTTCCTGAGCGGCTGCCACCCAGCCCTGGA
ACCATACAGGGTAAAGTGTCTGACACCTGTAATCTACTATGTCCCTGACTTCATCTCCAA
GGAAGAGGAGGAGTATTTGCTTCGACAGGTCTTCAATGCCCCAAAGCCAAAGTGGACCCA
GCTTTCCGGGAGGAAGTTACAGAACTGGGGTGGGCTCCCCCATCCCCGGGGGATGGTTCC
TGAGCGGCTGCCACCGTGGCTCCAGCGCTATGTGGACAAAGTGTCTGACCTCAGCCTTTT
TGGGGGTCTCCCAGCCAACCACGTCCTTGTGAACCAGTATCTGCCTGGGGAGGGCATCAT
GCCCCACGAGGACGGGCCACTCTACTACCCGACCGTCAGCACCATCAGCTTGGGCTCCCA
CACCATGCTGGACCTCTACGAGCCTCGGCAGCCAGAGGATGATGACCCTACAGAGCAGCC
CCGGCCCCCGCCCCGGCCGGCCACCTCGCTGCTGCTTGAACCCCGCAGCCTGCTGGTGCT
CCGTGGCACCGCCTACACGCGCTTCCTCCATGGCATAGCAGCCGCCCGCATAGACGCTCT
GGACGCAGTCTCCCTGCCGCCCAACGCAGCCGCCTGCCCCTCGGCGCAGCCCGGAGCGCG
CCTGGTCCGCGGCACCCGCATCTCGCTGACCATCCGCCGCGTGCCCCGCGTGCTGCGCGC
TAGCCTCCTGCTCAGCAAGTGACTCCAGGCCCTCGGACCCGCTCAGATTCCTGAGCTCTC
GCCTGCTCTGGACAACTACCGCCCTGTGACCTTGGAACCCTGGGGCAGAGGCGGCTCCCG
CGGGTTATTTTCCTTGTAACTGTGTGGGAACCACAGGAAAAGGCCCCATTCCAAATAAAC
AACTACAAAATCTTCAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61831348|ref|XP_585949.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61831348|ref|XP_585949.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               329-481, gnl|bosTau2|chr18 (41801945-41801793)
               

               
               329-481, gnl|Hg17|chr19 (41193788-41193636)
               

               
               329-481, gnl|Mm7|chr7 (27253381-27253533)
               


               
               595-1030, gnl|bosTau2|chr18 (41800254-41799818)
               

               
               595-1030, gnl|Hg17|chr19 (41192299-41191871)
               

               
               595-1030, gnl|Mm7|chr7 (27255061-27255442)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               329-481, gnl|bosTau2|chr18 (41801945-41801793)
               

               
               329-481, gnl|Hg17|chr19 (41193788-41193636)
               

               
               329-481, gnl|Mm7|chr7 (27253381-27253533)
               


               
               595-1030, gnl|bosTau2|chr18 (41800254-41799818)
               

               
               595-1030, gnl|Hg17|chr19 (41192299-41191871)
               

               
               595-1030, gnl|Mm7|chr7 (27255061-27255442)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               pla (0.802032)
               

               
               fce (0.271592)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.802032)
               

               
               fce (0.271592)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	329-481, gnl\|bosTau2\|chr18 (41801945-41801793)
	329-481, gnl\|Hg17\|chr19 (41193788-41193636)
	329-481, gnl\|Mm7\|chr7 (27253381-27253533)

	595-1030, gnl\|bosTau2\|chr18 (41800254-41799818)
	595-1030, gnl\|Hg17\|chr19 (41192299-41191871)
	595-1030, gnl\|Mm7\|chr7 (27255061-27255442)

	pla (0.802032)
	fce (0.271592)
	ill (0.175593)
	ton (0.1755)
	nco (0.161734)
	hyp (0.142837)
	ute (0.132784)
	cov (0.132153)
	eru (0.120048)
	med (0.116252)
	jca (0.11396)