Ss1.1-Pig4-TMW8031B17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTCTGCGGTAGTCGCCTGAGGCGTAGCATTTCTGCGGCGCGTCATGGCGACTCAGCAG AGGCCTTTCCACTTGGTGGTGTTTGGCGCCTCTGGCTTCACCGGCCAGTTCGTGACCGAG GAGGTGGCTCGGGAGCAGGTGTCCCCAGAGCGGCGCACCAGCCTGCCCTGGGCTGTGGCG GGCCGTTGCCGGGAGAAGCTGCAGCGAGTGCTGGAGCGGGCGGCCATGAAGCTGGGAAGA CCGACACTGCCGTCTGAAGTTGGAATAATAATTTGTGATATCACTAATCCAGCCTCACTT GATGAGATGGCTAAACAGGCAGCAGTTGTTCTCAATTGTGTTGGACCATACCGATTTTAT GGAGAACCTGTCGTAAGAGCATGTATTGAAAATGGAGCTAGCTGTATTGACATCTGTGGA GAACCTCAGTTTCTAGAACTAATATATTGGAAGTATCACGAGAAAGCTGCAGAAAAAGGG GTTTATATCATTGGAAGCAGTGGCTTTGACTCCATTCCAGCAGATATGGGAGTAATATTT ACCACAAATAAAATGAATGGTACACTGACTGCTGTGGAAAGTTTTCTGACTCTACATTCA GGACCTGAGGGGTTGTGCATTCATGATGGAACCTGGAAGTCAGCAGTTTATGGTTTTGCA GATAAGAGTCAGTTGAAGAAACTACGAAATGAGTCACATCTGAAGCCTGTCCCAGTTGTT GGTCCAAAACTGAAAAGAAGGTGGCCAGTTTCTTACTGCAGAGAACTCAACAGTTATTCC ATTCCTTTCCTGGGAGCAGATGTGTCTGTTGTGAAGCGGACTCAGCGTTACTTGCATGAA AATTTAGAGCAGTCACCTGTTCAGTATGCTGCTTATGTAACTATGGGAGGCATCACCTCT ATTATTAAGCTGATGTTTGCTGGACTGTTTTTTTTATTCTTTGTGAGGTTTGGCATTGGA AGGCAACTTCTCGTAAAGTTCCCATGGCTCTTTTCCTTTGGTTATTTTTCAAAACAAGGC CCAACACAAAAACAGATGGATGCCTCATCATTTACGTTGACATTTTTTGGTCAAGGATAC AGCCAAGGTCTTAGTCCTGATAAGAGCAAGCCAAATATCAGAATTTGTACTCAGGTGAAA GGACCAGAAGCTGGCTATGTGGCTACCCCCATAGCCATGGTCCAGGCAGCCCTGACTCTT CTAAATGATGCCTCTGATCTTCCTAAGGCAGGTGGAGTCTTCACTCCTGGAGCAGCCTTC TGCAGAACAAAGTTGATCGAAAGACTCAACCAACGTGGTATTGAATTTAGTGTCATTAGC AGCTCTGAAGTCTAAACAGTTGAATAATTAACCAAAGTCATAAAGTGCGTGAATTAACAG CTTTTTAATTTGGTATTTGAAATTCTTTAAGCCTATCTGACTACATGTGGAAAAGACTGT CAATCTAAAATATGTGTACCATAAAAGCAGGAAATCATACTAACTTACCCTAAATTTCAA ATCTTAGCTGATTTGTGATTTTAGTGCTTATGAGAGGAAACTAGTATTTGGCTGACTTTT TCATTGAAGAATTCATGGTCAGTTTTTATAAGGAAGCTGGTAGATCCGAGGGTGGGATGA GTAGCTGTGTGTTGCTGGCATATCCCTTGATGAAACACCCAGGCTGGTGGTCATATCAGA CAGTAACTACTATTTTTCTTGCTATGATACTGAATGGATCTCACTTTCCCATGAGTTTGA CTGCAAAGTGTAGGCCTTTGCTATTTTAGCTTAGTTTTTCACCCATCTACGCAGACTGAT TTTGGACTCTTACCTAAGTTGAATAATAAAGGATTATCAATTAAACAGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTCTGCGGTAGTCGCCTGAGGCGTAGCATTTCTGCGGCGCGTCATGGCGACTCAGCAG AGGCCTTTCCACTTGGTGGTGTTTGGCGCCTCTGGCTTCACCGGCCAGTTCGTGACCGAG GAGGTGGCTCGGGAGCAGGTGTCCCCAGAGCGGCGCACCAGCCTGCCCTGGGCTGTGGCG GGCCGTTGCCGGGAGAAGCTGCAGCGAGTGCTGGAGCGGGCGGCCATGAAGCTGGGAAGA CCGACACTGCCGTCTGAAGTTGGAATAATAATTTGTGATATCACTAATCCAGCCTCACTT GATGAGATGGCTAAACAGGCAGCAGTTGTTCTCAATTGTGTTGGACCATACCGATTTTAT GGAGAACCTGTCGTAAGAGCATGTATTGAAAATGGAGCTAGCTGTATTGACATCTGTGGA GAACCTCAGTTTCTAGAACTAATATATTGGAAGTATCACGAGAAAGCTGCAGAAAAAGGG GTTTATATCATTGGAAGCAGTGGCTTTGACTCCATTCCAGCAGATATGGGAGTAATATTT ACCACAAATAAAATGAATGGTACACTGACTGCTGTGGAAAGTTTTCTGACTCTACATTCA GGACCTGAGGGGTTGTGCATTCATGATGGAACCTGGAAGTCAGCAGTTTATGGTTTTGCA GATAAGAGTCAGTTGAAGAAACTACGAAATGAGTCACATCTGAAGCCTGTCCCAGTTGTT GGTCCAAAACTGAAAAGAAGGTGGCCAGTTTCTTACTGCAGAGAACTCAACAGTTATTCC ATTCCTTTCCTGGGAGCAGATGTGTCTGTTGTGAAGCGGACTCAGCGTTACTTGCATGAA AATTTAGAGCAGTCACCTGTTCAGTATGCTGCTTATGTAACTATGGGAGGCATCACCTCT ATTATTAAGCTGATGTTTGCTGGACTGTTTTTTTTATTCTTTGTGAGGTTTGGCATTGGA AGGCAACTTCTCGTAAAGTTCCCATGGCTCTTTTCCTTTGGTTATTTTTCAAAACAAGGC CCAACACAAAAACAGATGGATGCCTCATCATTTACGTTGACATTTTTTGGTCAAGGATAC AGCCAAGGTCTTAGTCCTGATAAGAGCAAGCCAAATATCAGAATTTGTACTCAGGTGAAA GGACCAGAAGCTGGCTATGTGGCTACCCCCATAGCCATGGTCCAGGCAGCCCTGACTCTT CTAAATGATGCCTCTGATCTTCCTAAGGCAGGTGGAGTCTTCACTCCTGGAGCAGCCTTC TGCAGAACAAAGTTGATCGAAAGACTCAACCAACGTGGTATTGAATTTAGTGTCATTAGC AGCTCTGAAGTCTAAACAGTTGAATAATTAACCAAAGTCATAAAGTGCGTGAATTAACAG CTTTTTAATTTGGTATTTGAAATTCTTTAAGCCTATCTGACTACATGTGGAAAAGACTGT CAATCTAAAATATGTGTACCATAAAAGCAGGAAATCATACTAACTTACCCTAAATTTCAA ATCTTAGCTGATTTGTGATTTTAGTGCTTATGAGAGGAAACTAGTATTTGGCTGACTTTT TCATTGAAGAATTCATGGTCAGTTTTTATAAGGAAGCTGGTAGATCCGAGGGTGGGATGA GTAGCTGTGTGTTGCTGGCATATCCCTTGATGAAACACCCAGGCTGGTGGTCATATCAGA CAGTAACTACTATTTTTCTTGCTATGATACTGAATGGATCTCACTTTCCCATGAGTTTGA CTGCAAAGTGTAGGCCTTTGCTATTTTAGCTTAGTTTTTCACCCATCTACGCAGACTGAT TTTGGACTCTTACCTAAGTTGAATAATAAAGGATTATCAATTAAACAGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 15-236, gnl|bosTau2|chr16 (19648206-19648428) | |
| 15-236, gnl|Hg17|chr1 (243213733-243213956) | |
| 15-236, gnl|Mm7|chr1 (179648399-179648621) | |
| 428-562, gnl|bosTau2|chr16 (19658119-19658253) | |
| 428-562, gnl|canFam2|chr7 (40429041-40429212) | |
| 428-562, gnl|danRer3|chr17 (7793727-7793582) | |
| 428-562, gnl|echTel1|scaffold_168822 (7330-7509) | |
| 428-562, gnl|fr1|chrUn (276063859-276063679) | |
| 428-562, gnl|galGal2|chr3 (30144925-30144782) | |
| 428-562, gnl|hg17|chr1 (243229508-243229692) | |
| 428-562, gnl|Hg17|chr1 (243229513-243229647) | |
| 428-562, gnl|mm7|chr1 (179658109-179658265) | |
| 428-562, gnl|Mm7|chr1 (179658114-179658248) | |
| 428-562, gnl|monDom2|scaffold_13 (36311234-36311066) | |
| 428-562, gnl|oryCun1|scaffold_185569 (4221-4400) | |
| 428-562, gnl|panTro1|chr1 (227308690-227308874) | |
| 428-562, gnl|rheMac2|chr1 (210258598-210258414) | |
| 428-562, gnl|rn3|chr13 (95548307-95548483) | |
| 428-562, gnl|tetNig1|chr5 (3455114-3455248) | |
| 739-867, gnl|bosTau2|chr16 (19667511-19667638) | |
| 739-867, gnl|canFam2|chr7 (40448142-40448283) | |
| 739-867, gnl|danRer3|chr17 (7789690-7789548) | |
| 739-867, gnl|dasNov1|scaffold_248679 (1803-1665) | |
| 739-867, gnl|echTel1|scaffold_317468 (82484-82603) | |
| 739-867, gnl|fr1|chrUn (276063021-276062885) | |
| 739-867, gnl|hg17|chr1 (243248364-243248505) | |
| 739-867, gnl|Hg17|chr1 (243248375-243248502) | |
| 739-867, gnl|loxAfr1|scaffold_1871 (146443-146584) | |
| 739-867, gnl|mm7|chr1 (179660554-179660695) | |
| 739-867, gnl|Mm7|chr1 (179660565-179660692) | |
| 739-867, gnl|monDom2|scaffold_13 (36302813-36302672) | |
| 739-867, gnl|oryCun1|scaffold_196994 (9675-9816) | |
| 739-867, gnl|panTro1|chr1 (227327220-227327361) | |
| 739-867, gnl|rheMac2|chr1 (210235993-210235852) | |
| 739-867, gnl|rn3|chr13 (95550517-95550658) | |
| 1033-1147, gnl|bosTau2|chr16 (19674582-19674696) | |
| 1033-1147, gnl|canFam2|chr7 (40454753-40454906) | |
| 1033-1147, gnl|danRer3|chr17 (7787791-7787648) | |
| 1033-1147, gnl|dasNov1|scaffold_26019 (45171-45317) | |
| 1033-1147, gnl|echTel1|scaffold_313031 (82984-82856) | |
| 1033-1147, gnl|galGal2|chr3 (30139591-30139454) | |
| 1033-1147, gnl|hg17|chr1 (243253584-243253737) | |
| 1033-1147, gnl|Hg17|chr1 (243253586-243253700) | |
| 1033-1147, gnl|loxAfr1|scaffold_17048 (38099-38247) | |
| 1033-1147, gnl|mm7|chr1 (179664275-179664417) | |
| 1033-1147, gnl|Mm7|chr1 (179664277-179664391) | |
| 1033-1147, gnl|monDom2|scaffold_13 (36300714-36300564) | |
| 1033-1147, gnl|oryCun1|scaffold_204073 (37860-37707) | |
| 1033-1147, gnl|panTro1|chr1 (227332462-227332615) | |
| 1033-1147, gnl|rheMac2|chr1 (210230115-210229962) | |
| 1033-1147, gnl|rn3|chr13 (95558068-95558221) | |
| 1033-1147, gnl|tetNig1|chr5 (3456471-3456591) | |
| 1231-1761, gnl|bosTau2|chr16 (19677465-19677993) | |
| 1231-1761, gnl|Hg17|chr1 (243256539-243257074) | |
| 1231-1761, gnl|Mm7|chr1 (179666648-179667155) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 15-236, gnl|bosTau2|chr16 (19648206-19648428) | |
| 15-236, gnl|Hg17|chr1 (243213733-243213956) | |
| 15-236, gnl|Mm7|chr1 (179648399-179648621) | |
| 428-562, gnl|bosTau2|chr16 (19658119-19658253) | |
| 428-562, gnl|canFam2|chr7 (40429041-40429212) | |
| 428-562, gnl|danRer3|chr17 (7793727-7793582) | |
| 428-562, gnl|echTel1|scaffold_168822 (7330-7509) | |
| 428-562, gnl|fr1|chrUn (276063859-276063679) | |
| 428-562, gnl|galGal2|chr3 (30144925-30144782) | |
| 428-562, gnl|hg17|chr1 (243229508-243229692) | |
| 428-562, gnl|Hg17|chr1 (243229513-243229647) | |
| 428-562, gnl|mm7|chr1 (179658109-179658265) | |
| 428-562, gnl|Mm7|chr1 (179658114-179658248) | |
| 428-562, gnl|monDom2|scaffold_13 (36311234-36311066) | |
| 428-562, gnl|oryCun1|scaffold_185569 (4221-4400) | |
| 428-562, gnl|panTro1|chr1 (227308690-227308874) | |
| 428-562, gnl|rheMac2|chr1 (210258598-210258414) | |
| 428-562, gnl|rn3|chr13 (95548307-95548483) | |
| 428-562, gnl|tetNig1|chr5 (3455114-3455248) | |
| 739-867, gnl|bosTau2|chr16 (19667511-19667638) | |
| 739-867, gnl|canFam2|chr7 (40448142-40448283) | |
| 739-867, gnl|danRer3|chr17 (7789690-7789548) | |
| 739-867, gnl|dasNov1|scaffold_248679 (1803-1665) | |
| 739-867, gnl|echTel1|scaffold_317468 (82484-82603) | |
| 739-867, gnl|fr1|chrUn (276063021-276062885) | |
| 739-867, gnl|hg17|chr1 (243248364-243248505) | |
| 739-867, gnl|Hg17|chr1 (243248375-243248502) | |
| 739-867, gnl|loxAfr1|scaffold_1871 (146443-146584) | |
| 739-867, gnl|mm7|chr1 (179660554-179660695) | |
| 739-867, gnl|Mm7|chr1 (179660565-179660692) | |
| 739-867, gnl|monDom2|scaffold_13 (36302813-36302672) | |
| 739-867, gnl|oryCun1|scaffold_196994 (9675-9816) | |
| 739-867, gnl|panTro1|chr1 (227327220-227327361) | |
| 739-867, gnl|rheMac2|chr1 (210235993-210235852) | |
| 739-867, gnl|rn3|chr13 (95550517-95550658) | |
| 1033-1147, gnl|bosTau2|chr16 (19674582-19674696) | |
| 1033-1147, gnl|canFam2|chr7 (40454753-40454906) | |
| 1033-1147, gnl|danRer3|chr17 (7787791-7787648) | |
| 1033-1147, gnl|dasNov1|scaffold_26019 (45171-45317) | |
| 1033-1147, gnl|echTel1|scaffold_313031 (82984-82856) | |
| 1033-1147, gnl|galGal2|chr3 (30139591-30139454) | |
| 1033-1147, gnl|hg17|chr1 (243253584-243253737) | |
| 1033-1147, gnl|Hg17|chr1 (243253586-243253700) | |
| 1033-1147, gnl|loxAfr1|scaffold_17048 (38099-38247) | |
| 1033-1147, gnl|mm7|chr1 (179664275-179664417) | |
| 1033-1147, gnl|Mm7|chr1 (179664277-179664391) | |
| 1033-1147, gnl|monDom2|scaffold_13 (36300714-36300564) | |
| 1033-1147, gnl|oryCun1|scaffold_204073 (37860-37707) | |
| 1033-1147, gnl|panTro1|chr1 (227332462-227332615) | |
| 1033-1147, gnl|rheMac2|chr1 (210230115-210229962) | |
| 1033-1147, gnl|rn3|chr13 (95558068-95558221) | |
| 1033-1147, gnl|tetNig1|chr5 (3456471-3456591) | |
| 1231-1761, gnl|bosTau2|chr16 (19677465-19677993) | |
| 1231-1761, gnl|Hg17|chr1 (243256539-243257074) | |
| 1231-1761, gnl|Mm7|chr1 (179666648-179667155) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| cte (2.04918) | |
| cbe (0.956938) | |
| sug (0.763747) | |
| ova (0.645661) | |
| isp (0.601504) | |
| fcc (0.593354) | |
| cmu (0.55918) | |
| spc (0.453463) | |
| tes (0.415628) | |
| hea (0.408998) | |
| sto (0.359648) | |
| rec (0.346141) | |
| ecc (0.345105) | |
| vin (0.332557) | |
| ski (0.29347) | |
| hyp (0.285673) | |
| thg (0.253582) | |
| tra (0.246184) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| nms (0.213858) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| lun (0.150489) | |
| fat (0.147427) | |
| spl (0.143184) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ret (0.128733) | |
| bla (0.124347) | |
| nbm (0.0993246) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (2.04918) | |
| cbe (0.956938) | |
| sug (0.763747) | |
| ova (0.645661) | |
| isp (0.601504) | |
| fcc (0.593354) | |
| cmu (0.55918) | |
| spc (0.453463) | |
| tes (0.415628) | |
| hea (0.408998) | |
| sto (0.359648) | |
| rec (0.346141) | |
| ecc (0.345105) | |
| vin (0.332557) | |
| ski (0.29347) | |
| hyp (0.285673) | |
| thg (0.253582) | |
| tra (0.246184) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| nms (0.213858) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| lun (0.150489) | |
| fat (0.147427) | |
| spl (0.143184) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ret (0.128733) | |
| bla (0.124347) | |
| nbm (0.0993246) |