Ss1.1-Pig4-TMW8031B19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCCAGGAGCAAACCAAGGATTCTGTCCGGCAGATTATCTTCTCATCCCTTTTCAGCCCC CAAGGGAACAAAGCCGATGACAACAGGATGAGCTTGTTGGGAAAACTGGTCTCCATGGCA GTGGCTGTGTGTCGAATCCCAGTGTTGGAGTGTGCAGCCTCTTGGCTCCAGCGGACGCCC GTGGTCTACTGCGTGAGGTTGGCCAGGGCCCTGGTAGACGACTACTGCTGCCTGGTGCCG GGATCCGTGCAGACGCTGAAGCAGATATTCAGTGCCAGCCCCCGCTTCTGCTGCCAGTTC ATAACTTCAGTCACTGCGCTGTACGACCTGTCGTCAGATGAGCTCATCCCCCCGTTGGAC TTGCTGGAAATGATTGTCACCTGGATTTTTGAGGACCCGCGGTTGATTCTCATCACTTTT CTGAACACGCCAATTGCAGCCAACCTCCCAATAGGATTTTTGGAGCTCACCCCGCTCACT GGATTGATCCGCTGGTGTGTGAAGGCCCCTCTGGCTTATAAACGGAAGAAGAAGCCCTCC TTAGCCAACGGCCACGTCCCCGCCAAAGTCGCGAAGGACTCGGCGGGGATGGACAGAGAC TCCCACCTCTTGTACTCCAAGCTCCACCTCAGCGTCCTGCAGGTCCTCATGATGCTGCAG GTGCACTTGACCGAGAAGAACCTGTACGGGCGCCTGGGGCTCATCCTCTTTGACCACATG GTCCCGCTGGTGGAGGAGATCAACAGATTGGCGGATGAACTGAACCCCCTCAACGCCTCC CAGGAGATCGAGCTCTCCCTGGACCGGCTGGCACAAGCTCTGCAGGTGGCCATGGCCTCC GGAGCCCTGCTGTGCACAAGAGATGACCTCAGAACCTTGTGCTCCAGGCTGCCCCATAAC AACCTGCTCCAGCTGGTGATCTCGGGCCCCGTGCAGCAGTCGCCCCACGCGGCGCTCCCT CCCGGCTTCTACCCCCACATCCACACGCCCCCGCTGGGCTACGGGGCCGTGCCAGCCCAC CCCGCCGCCCACCCCGCCCTGCCCACACACCCCGGGCACACCTTCATCTCGGGCATGACG TTTCCATTCAGGCCCATCCGCTAGGCCGACCCGAGGACCGCCGAGCGGCCCGTGCCTTCT CGCCTGGCTTGGAGGCAGCCTTCCCGGGGAAGAGGGCCTCGGAGTGGGCGCGGCAGGCGA CCCTCCTCCCTGGCAGATCTGTGTTGGGGCAGAAGTTCTGCGACGTCGCCAACCAGGCAC CTGCTACCCGGCCACGTTCGTAAACGTCCAGGTGGGATGGATGAAAGGAAAAACGTCCAG CCATCAGCGGAGCCGTGCGGGCGTCTGTGGGCCTGTGTGTCTCCTGGTGTGTCATTGCAG ACACACGCTCTGAGCCTGCGCTGTCGGGGCACCGACGGGGAAGCAGCGTCTGCAGTCCAC CCGCCTGGCTTCCCTCCCTGCGAACGGGCTGTGGCCCCGATAAACACAGGCCACTTGCAC AGCCCGGGAGCTCCACGCCGAAGCGTTGGCATCACAAGCTTACCCACAGCACGGGTGCCA GTCGGGGAAACCTGTGAGCCTTGCCCCGTCACCGAGGAAAGGAACTCGGCCATTTTATTG GGGTCTCTAAATTGTCCTTTCGTATGTTCAAATAAATTTTTTTCTAAACGGTAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCCAGGAGCAAACCAAGGATTCTGTCCGGCAGATTATCTTCTCATCCCTTTTCAGCCCC CAAGGGAACAAAGCCGATGACAACAGGATGAGCTTGTTGGGAAAACTGGTCTCCATGGCA GTGGCTGTGTGTCGAATCCCAGTGTTGGAGTGTGCAGCCTCTTGGCTCCAGCGGACGCCC GTGGTCTACTGCGTGAGGTTGGCCAGGGCCCTGGTAGACGACTACTGCTGCCTGGTGCCG GGATCCGTGCAGACGCTGAAGCAGATATTCAGTGCCAGCCCCCGCTTCTGCTGCCAGTTC ATAACTTCAGTCACTGCGCTGTACGACCTGTCGTCAGATGAGCTCATCCCCCCGTTGGAC TTGCTGGAAATGATTGTCACCTGGATTTTTGAGGACCCGCGGTTGATTCTCATCACTTTT CTGAACACGCCAATTGCAGCCAACCTCCCAATAGGATTTTTGGAGCTCACCCCGCTCACT GGATTGATCCGCTGGTGTGTGAAGGCCCCTCTGGCTTATAAACGGAAGAAGAAGCCCTCC TTAGCCAACGGCCACGTCCCCGCCAAAGTCGCGAAGGACTCGGCGGGGATGGACAGAGAC TCCCACCTCTTGTACTCCAAGCTCCACCTCAGCGTCCTGCAGGTCCTCATGATGCTGCAG GTGCACTTGACCGAGAAGAACCTGTACGGGCGCCTGGGGCTCATCCTCTTTGACCACATG GTCCCGCTGGTGGAGGAGATCAACAGATTGGCGGATGAACTGAACCCCCTCAACGCCTCC CAGGAGATCGAGCTCTCCCTGGACCGGCTGGCACAAGCTCTGCAGGTGGCCATGGCCTCC GGAGCCCTGCTGTGCACAAGAGATGACCTCAGAACCTTGTGCTCCAGGCTGCCCCATAAC AACCTGCTCCAGCTGGTGATCTCGGGCCCCGTGCAGCAGTCGCCCCACGCGGCGCTCCCT CCCGGCTTCTACCCCCACATCCACACGCCCCCGCTGGGCTACGGGGCCGTGCCAGCCCAC CCCGCCGCCCACCCCGCCCTGCCCACACACCCCGGGCACACCTTCATCTCGGGCATGACG TTTCCATTCAGGCCCATCCGCTAGGCCGACCCGAGGACCGCCGAGCGGCCCGTGCCTTCT CGCCTGGCTTGGAGGCAGCCTTCCCGGGGAAGAGGGCCTCGGAGTGGGCGCGGCAGGCGA CCCTCCTCCCTGGCAGATCTGTGTTGGGGCAGAAGTTCTGCGACGTCGCCAACCAGGCAC CTGCTACCCGGCCACGTTCGTAAACGTCCAGGTGGGATGGATGAAAGGAAAAACGTCCAG CCATCAGCGGAGCCGTGCGGGCGTCTGTGGGCCTGTGTGTCTCCTGGTGTGTCATTGCAG ACACACGCTCTGAGCCTGCGCTGTCGGGGCACCGACGGGGAAGCAGCGTCTGCAGTCCAC CCGCCTGGCTTCCCTCCCTGCGAACGGGCTGTGGCCCCGATAAACACAGGCCACTTGCAC AGCCCGGGAGCTCCACGCCGAAGCGTTGGCATCACAAGCTTACCCACAGCACGGGTGCCA GTCGGGGAAACCTGTGAGCCTTGCCCCGTCACCGAGGAAAGGAACTCGGCCATTTTATTG GGGTCTCTAAATTGTCCTTTCGTATGTTCAAATAAATTTTTTTCTAAACGGTAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 979-1098, - strand, RNAz p=0.8422 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 979-1098, - strand, RNAz p=0.8422 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-171, gnl|bosTau2|chr25 (33481978-33482148) | |
| 1-171, gnl|canFam2|chr6 (14922070-14922277) | |
| 1-171, gnl|danRer3|chr1 (6542608-6542422) | |
| 1-171, gnl|dasNov1|scaffold_34501 (4213-4014) | |
| 1-171, gnl|echTel1|scaffold_253485 (14673-14486) | |
| 1-171, gnl|fr1|chrUn (32276916-32277102) | |
| 1-171, gnl|galGal2|chr14 (14156639-14156842) | |
| 1-171, gnl|hg17|chr7 (6404555-6404762) | |
| 1-171, gnl|Hg17|chr7 (6404568-6404738) | |
| 1-171, gnl|loxAfr1|scaffold_3253 (73434-73621) | |
| 1-171, gnl|mm7|chr5 (142347297-142347096) | |
| 1-171, gnl|Mm7|chr5 (142347282-142347112) | |
| 1-171, gnl|monDom2|scaffold_49 (1775449-1775262) | |
| 1-171, gnl|oryCun1|scaffold_139786 (852-1040) | |
| 1-171, gnl|rheMac2|chr3 (44829475-44829682) | |
| 1-171, gnl|rn3|chr12 (11637150-11637353) | |
| 1-171, gnl|tetNig1|chr15 (2727336-2727150) | |
| 1-171, gnl|xenTro1|scaffold_12 (2344384-2344197) | |
| 189-305, gnl|bosTau2|chr25 (33486527-33486413) | |
| 189-305, gnl|canFam2|chr6 (14928209-14928519) | |
| 189-305, gnl|hg17|chr7 (6412055-6412356) | |
| 189-305, gnl|loxAfr1|scaffold_3253 (78560-78836) | |
| 189-305, gnl|mm7|chr5 (142342101-142341848) | |
| 189-305, gnl|Mm7|chr5 (142344796-142344677) | |
| 189-305, gnl|oryCun1|scaffold_139786 (8752-8991) | |
| 189-305, gnl|panTro1|chr6 (6386464-6386163) | |
| 189-305, gnl|rheMac2|chr3 (44837362-44837666) | |
| 189-305, gnl|rn3|chr12 (11642558-11642837) | |
| 335-865, gnl|bosTau2|chr25 (33487140-33487670) | |
| 335-865, gnl|Hg17|chr7 (6412697-6413230) | |
| 335-865, gnl|Mm7|chr5 (142341077-142340547) | |
| 900-1669, gnl|bosTau2|chr25 (33491689-33492488) | |
| 900-1669, gnl|Hg17|chr7 (6420828-6421592) | |
| 900-1669, gnl|Mm7|chr5 (142334940-142334148) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-171, gnl|bosTau2|chr25 (33481978-33482148) | |
| 1-171, gnl|canFam2|chr6 (14922070-14922277) | |
| 1-171, gnl|danRer3|chr1 (6542608-6542422) | |
| 1-171, gnl|dasNov1|scaffold_34501 (4213-4014) | |
| 1-171, gnl|echTel1|scaffold_253485 (14673-14486) | |
| 1-171, gnl|fr1|chrUn (32276916-32277102) | |
| 1-171, gnl|galGal2|chr14 (14156639-14156842) | |
| 1-171, gnl|hg17|chr7 (6404555-6404762) | |
| 1-171, gnl|Hg17|chr7 (6404568-6404738) | |
| 1-171, gnl|loxAfr1|scaffold_3253 (73434-73621) | |
| 1-171, gnl|mm7|chr5 (142347297-142347096) | |
| 1-171, gnl|Mm7|chr5 (142347282-142347112) | |
| 1-171, gnl|monDom2|scaffold_49 (1775449-1775262) | |
| 1-171, gnl|oryCun1|scaffold_139786 (852-1040) | |
| 1-171, gnl|rheMac2|chr3 (44829475-44829682) | |
| 1-171, gnl|rn3|chr12 (11637150-11637353) | |
| 1-171, gnl|tetNig1|chr15 (2727336-2727150) | |
| 1-171, gnl|xenTro1|scaffold_12 (2344384-2344197) | |
| 189-305, gnl|bosTau2|chr25 (33486527-33486413) | |
| 189-305, gnl|canFam2|chr6 (14928209-14928519) | |
| 189-305, gnl|hg17|chr7 (6412055-6412356) | |
| 189-305, gnl|loxAfr1|scaffold_3253 (78560-78836) | |
| 189-305, gnl|mm7|chr5 (142342101-142341848) | |
| 189-305, gnl|Mm7|chr5 (142344796-142344677) | |
| 189-305, gnl|oryCun1|scaffold_139786 (8752-8991) | |
| 189-305, gnl|panTro1|chr6 (6386464-6386163) | |
| 189-305, gnl|rheMac2|chr3 (44837362-44837666) | |
| 189-305, gnl|rn3|chr12 (11642558-11642837) | |
| 335-865, gnl|bosTau2|chr25 (33487140-33487670) | |
| 335-865, gnl|Hg17|chr7 (6412697-6413230) | |
| 335-865, gnl|Mm7|chr5 (142341077-142340547) | |
| 900-1669, gnl|bosTau2|chr25 (33491689-33492488) | |
| 900-1669, gnl|Hg17|chr7 (6420828-6421592) | |
| 900-1669, gnl|Mm7|chr5 (142334940-142334148) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| elu (0.385356) | |
| hyp (0.285673) | |
| ebs (0.236602) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jca (0.11396) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| hyp (0.285673) | |
| ebs (0.236602) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jca (0.11396) |