Non-Coding RNA Search

Ss1.1-Pig4-TMW8031C01.3.5

Sequence:


               
               GATGTGCTAATTTGAGCAACTTAATTTACTTTTAGCAGTCTGTGTAGATAACTAAAATCC
CAGTTAAGTATTTTTTAATTTCAGGCTACTTATGCCATGCTTGGGATGTTATTTGAAAGA
AGGAAAAATACACTTAACCTTTCTGCACCTTCATCTTCTAAGTAAACCTATGGATTATTT
GATGGGGGTAAATGAACATTTCTTATACACACATACCAAGGACATGCTTGTGGCTAAAGT
GAGTTGATAATGTTGTGCAAAGGATAGCTGTCACCAACTCATTTCTTTATAGTCCATAAT
GAAACAAACATCTTGTATACTGTTAATTCTGTAAACAGATGCATGTTCAAAAGATCTATT
ATGGTCTTGTAATCTTAATCTAATATATTTTAGATATTTTAATTTTTTTCCCTCTTGGGA
AATACATTTAGTAGTGTAGAAAATACTTCATGACATTTTCATATAAGGTTATATAACTTT
TCATACATAAACATGAAATTTGTTGTAGAAAATTCTTTAAACCAAACATTTTAATCTAGG
ACTTCAATTTAATCTGTCCCTTGAATCTATTTTTATGTGGCCCTTAAAACCATATCCCAA
AATCCATTGCTAATATAGCAATAAAAATACTTTGGGTACTGACAGCCTCTTTGGAGTATG
TACATATATTGTTGCAAACCTGTATTCATATTCTTTTCTTTGATAATGTTGTACTAAAAT
CCAAAATGGCTTTTACACCATTTTTTAAACCAATTTTTTTTCCTTTAATGTTGGTACCAG
ATTTGCTGTAAATGACTGCTGCTTTGGGGATTAAATATTTTGTCAGTGAAGTTACCACCA
GAACACTAAATTAATGAATAAAATTTTCGGAATAAGTGGCATAGGTAAATTTTGTTAGGC
CTTATTCAAAATTTGTTCATTATCAAACCATGCCATTTTTTTCCCCAGAAAGGGGGGGGG
GGGGGAAAAAAGGCTTGTTTTTTGTTGCTAGGTTATATTTTGTGTAGTAAAGAAAAAATT
CTTTGGTCCATGTTGTAATCTTCATTCATACTGCAATTTTAAGGTTGTCTTATATGTACT
ATAGTAAATAGATGATTTTGAGATTTGAGGCTCCTAAGAGTTTGATTTGCTCCATGTTTT
TCCTAAAATAAATACTGTCTTTCCCAACTGTTATGTCCTAGGTATTGTACTTCTAATTTT
AACTTCAGAATCAAGATGTTGACATGAACCAGGCTGCTGTTGAAGTACATGTATATTATA
AATTATCTTATTTGTGTTATACTCTTACATGTTATTATCTTTTCTAAGAAAACAAAGTCC
CTATTATTCCTATTGCAAAGCACACAGGAATTAAGAAAGTACAGTAATTTTTAAAAAGAA
AAATCCGGTAAATGTAGTATTCTTAACTTGTTCTATATTACTTATACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGTGCTAATTTGAGCAACTTAATTTACTTTTAGCAGTCTGTGTAGATAACTAAAATCC
CAGTTAAGTATTTTTTAATTTCAGGCTACTTATGCCATGCTTGGGATGTTATTTGAAAGA
AGGAAAAATACACTTAACCTTTCTGCACCTTCATCTTCTAAGTAAACCTATGGATTATTT
GATGGGGGTAAATGAACATTTCTTATACACACATACCAAGGACATGCTTGTGGCTAAAGT
GAGTTGATAATGTTGTGCAAAGGATAGCTGTCACCAACTCATTTCTTTATAGTCCATAAT
GAAACAAACATCTTGTATACTGTTAATTCTGTAAACAGATGCATGTTCAAAAGATCTATT
ATGGTCTTGTAATCTTAATCTAATATATTTTAGATATTTTAATTTTTTTCCCTCTTGGGA
AATACATTTAGTAGTGTAGAAAATACTTCATGACATTTTCATATAAGGTTATATAACTTT
TCATACATAAACATGAAATTTGTTGTAGAAAATTCTTTAAACCAAACATTTTAATCTAGG
ACTTCAATTTAATCTGTCCCTTGAATCTATTTTTATGTGGCCCTTAAAACCATATCCCAA
AATCCATTGCTAATATAGCAATAAAAATACTTTGGGTACTGACAGCCTCTTTGGAGTATG
TACATATATTGTTGCAAACCTGTATTCATATTCTTTTCTTTGATAATGTTGTACTAAAAT
CCAAAATGGCTTTTACACCATTTTTTAAACCAATTTTTTTTCCTTTAATGTTGGTACCAG
ATTTGCTGTAAATGACTGCTGCTTTGGGGATTAAATATTTTGTCAGTGAAGTTACCACCA
GAACACTAAATTAATGAATAAAATTTTCGGAATAAGTGGCATAGGTAAATTTTGTTAGGC
CTTATTCAAAATTTGTTCATTATCAAACCATGCCATTTTTTTCCCCAGAAAGGGGGGGGG
GGGGGAAAAAAGGCTTGTTTTTTGTTGCTAGGTTATATTTTGTGTAGTAAAGAAAAAATT
CTTTGGTCCATGTTGTAATCTTCATTCATACTGCAATTTTAAGGTTGTCTTATATGTACT
ATAGTAAATAGATGATTTTGAGATTTGAGGCTCCTAAGAGTTTGATTTGCTCCATGTTTT
TCCTAAAATAAATACTGTCTTTCCCAACTGTTATGTCCTAGGTATTGTACTTCTAATTTT
AACTTCAGAATCAAGATGTTGACATGAACCAGGCTGCTGTTGAAGTACATGTATATTATA
AATTATCTTATTTGTGTTATACTCTTACATGTTATTATCTTTTCTAAGAAAACAAAGTCC
CTATTATTCCTATTGCAAAGCACACAGGAATTAAGAAAGTACAGTAATTTTTAAAAAGAA
AAATCCGGTAAATGTAGTATTCTTAACTTGTTCTATATTACTTATACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               182-298, + strand, RNAz p=0.770771

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               182-298, + strand, RNAz p=0.770771

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               249-320, + strand, RNAmicro p=0.985717

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               249-320, + strand, RNAmicro p=0.985717

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC075799, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC075799, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1428, gnl|bosTau2|chr21 (28813483-28814898)
               

               
               1-1428, gnl|Hg17|chr14 (31694309-31695643)
               

               
               1-1428, gnl|Mm7|chr12 (50580600-50581981)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1428, gnl|bosTau2|chr21 (28813483-28814898)
               

               
               1-1428, gnl|Hg17|chr14 (31694309-31695643)
               

               
               1-1428, gnl|Mm7|chr12 (50580600-50581981)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               liv (0.292569)
               

               
               ese (0.253004)
               

               
               nms (0.213858)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               ese (0.253004)
               

               
               nms (0.213858)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)

	1-1428, gnl\|bosTau2\|chr21 (28813483-28814898)
	1-1428, gnl\|Hg17\|chr14 (31694309-31695643)
	1-1428, gnl\|Mm7\|chr12 (50580600-50581981)

	liv (0.292569)
	ese (0.253004)
	nms (0.213858)
	eye (0.170503)
	fco (0.157208)
	bfe (0.149858)
	hyp (0.142837)
	ssp (0.13552)
	kid (0.129735)