Ss1.1-Pig4-TMW8031C15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCACTGATCCGTGAGGCGCGGCCGAGGGGTCGGCCTCCGTCCTGAGTCTGCGGCTGGCC CCTTTCGCAGAGGAACTAGGATGAATATGACTCAAGCCCGGGTTCTGGTGGCTGGAGTGG TGGGTCTGGTGGTCGTCCTCCTCTACGCCTCCATCCACAAGATCGAGGAAGGACACCTGG CCGTGTACTACAGGGGAGGAGCTTTACTAACTAGCCCCAGCGGACCAGGCTATCATATCA TGTTGCCTTTCATTACTACGTTCAGATCTGTGCAGACAACGCTACAAACAGATGAAGTTA AAAATGTGCCTTGTGGAACAAGTGGTGGAGTCATGATCTATATTGACCGAATAGAAGTAG TTAATATGCTGGCCCCTTGTGCAGTGTTTGATATTGTGAGAAACTACACTGCAGATTATG ACAAGACCTTAATCTTCAATAAAATCCACCATGAACTGAACCAGTTTTGCAGTGCCCACA CGCTTCAAGAAGTTTACATTGAATTGTTTGATCAGATAGACGAAAACCTGAAGCAAGCTC TGCAGAAAGATTTAAACGTCATGGCCCCAGGCCTCACCATACAGGCTGTACGTGTTACAA AACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAGTTAATGGAGGCTGAGAAGACAA AACTTCTTATAGCTGCACAGAAACAAAAGGTTGTGGAGAAAGAAGCTGAGACAGAGAGGA AAAAGGCTGTTATAGAAGCAGAGAAGATTGCACAAGTGGCAAAAATTCGGTTTCAGCAGA AAGTGATGGAAAAAGAAACTGAAAAGCGCATTTCTGAAATTGAAGATGCTGCATTCCTGG CCCGAGAGAAGGCAAAAGCAGATGCTGAGTATTATGCTGCACACAAATATGCCACCTCAA ACAAGCACAAATTGACCCCGGAATATCTGGAACTCAAGAGGTACCAGGCCATTGCTTCTA ACAGTAAGATCTACTTTGGCAGCAGCATCCCTAGCATGTTTGTGGACTCCTCTTGTGCTT TGAAATATTCAGATGTTAGGACTGGAAGAAAAAGCTCTCCCTCCTCTAAGGAGGCTCTTG AACCCTCTGGAGAGAGCCCCATCCAAAACAAGGAGAGCACAGGTTGATGCAACAGGTGGA AATGTTCTCCCATATCAAGATGTGGCCCAAGGGGTTAAGTGGGAACAATGGTTATACGTC TCTTCAGATTTACAGAGGACTCATGCTCCATCTGCTCTGCCTCTCCTGTGGTAGCCTGGT TCATCAGCTGATTGCAGGATAGAGCTGGCTGCCTGGCACCCAAACCGTCTTTTCAGCCAC AGTTTTATCAAGTATCCTGTGTATTCCTTTCTAAACTGGTACTCATGAATGAGAGAAAGT CTGATGCTAAGATACTGCCTGCACTGGAATGTTAAACACTAAATATATAACAAGCTGTGT TTTCTAAGCTGAGATCTATTGGATAATGTTTACATTGGTCCCTGGGGAAATGTGTGCTCA GCCATCCAAGAGATAGGAAGCCAGAGAGAAGACGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCACTGATCCGTGAGGCGCGGCCGAGGGGTCGGCCTCCGTCCTGAGTCTGCGGCTGGCC CCTTTCGCAGAGGAACTAGGATGAATATGACTCAAGCCCGGGTTCTGGTGGCTGGAGTGG TGGGTCTGGTGGTCGTCCTCCTCTACGCCTCCATCCACAAGATCGAGGAAGGACACCTGG CCGTGTACTACAGGGGAGGAGCTTTACTAACTAGCCCCAGCGGACCAGGCTATCATATCA TGTTGCCTTTCATTACTACGTTCAGATCTGTGCAGACAACGCTACAAACAGATGAAGTTA AAAATGTGCCTTGTGGAACAAGTGGTGGAGTCATGATCTATATTGACCGAATAGAAGTAG TTAATATGCTGGCCCCTTGTGCAGTGTTTGATATTGTGAGAAACTACACTGCAGATTATG ACAAGACCTTAATCTTCAATAAAATCCACCATGAACTGAACCAGTTTTGCAGTGCCCACA CGCTTCAAGAAGTTTACATTGAATTGTTTGATCAGATAGACGAAAACCTGAAGCAAGCTC TGCAGAAAGATTTAAACGTCATGGCCCCAGGCCTCACCATACAGGCTGTACGTGTTACAA AACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAGTTAATGGAGGCTGAGAAGACAA AACTTCTTATAGCTGCACAGAAACAAAAGGTTGTGGAGAAAGAAGCTGAGACAGAGAGGA AAAAGGCTGTTATAGAAGCAGAGAAGATTGCACAAGTGGCAAAAATTCGGTTTCAGCAGA AAGTGATGGAAAAAGAAACTGAAAAGCGCATTTCTGAAATTGAAGATGCTGCATTCCTGG CCCGAGAGAAGGCAAAAGCAGATGCTGAGTATTATGCTGCACACAAATATGCCACCTCAA ACAAGCACAAATTGACCCCGGAATATCTGGAACTCAAGAGGTACCAGGCCATTGCTTCTA ACAGTAAGATCTACTTTGGCAGCAGCATCCCTAGCATGTTTGTGGACTCCTCTTGTGCTT TGAAATATTCAGATGTTAGGACTGGAAGAAAAAGCTCTCCCTCCTCTAAGGAGGCTCTTG AACCCTCTGGAGAGAGCCCCATCCAAAACAAGGAGAGCACAGGTTGATGCAACAGGTGGA AATGTTCTCCCATATCAAGATGTGGCCCAAGGGGTTAAGTGGGAACAATGGTTATACGTC TCTTCAGATTTACAGAGGACTCATGCTCCATCTGCTCTGCCTCTCCTGTGGTAGCCTGGT TCATCAGCTGATTGCAGGATAGAGCTGGCTGCCTGGCACCCAAACCGTCTTTTCAGCCAC AGTTTTATCAAGTATCCTGTGTATTCCTTTCTAAACTGGTACTCATGAATGAGAGAAAGT CTGATGCTAAGATACTGCCTGCACTGGAATGTTAAACACTAAATATATAACAAGCTGTGT TTTCTAAGCTGAGATCTATTGGATAATGTTTACATTGGTCCCTGGGGAAATGTGTGCTCA GCCATCCAAGAGATAGGAAGCCAGAGAGAAGACGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1014-1173, - strand, RNAz p=0.885621 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1014-1173, - strand, RNAz p=0.885621 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 70-198, gnl|bosTau2|chr26 (11886272-11886144) | |
| 70-198, gnl|Hg17|chr10 (101935384-101935256) | |
| 70-198, gnl|Mm7|chr19 (43963268-43963140) | |
| 382-515, gnl|bosTau2|chr26 (11873403-11873270) | |
| 382-515, gnl|canFam2|chr28 (15945712-15945854) | |
| 382-515, gnl|danRer3|chr13 (27750163-27750307) | |
| 382-515, gnl|dasNov1|scaffold_30634 (46052-45912) | |
| 382-515, gnl|echTel1|scaffold_323038 (16789-16924) | |
| 382-515, gnl|fr1|chrUn (16529297-16529431) | |
| 382-515, gnl|galGal2|chr6 (8678337-8678202) | |
| 382-515, gnl|hg17|chr10 (101925679-101925821) | |
| 382-515, gnl|Hg17|chr10 (101925820-101925687) | |
| 382-515, gnl|loxAfr1|scaffold_30366 (40497-40631) | |
| 382-515, gnl|mm7|chr19 (43952912-43953053) | |
| 382-515, gnl|Mm7|chr19 (43953051-43952919) | |
| 382-515, gnl|monDom2|scaffold_41 (10853522-10853664) | |
| 382-515, gnl|oryCun1|scaffold_212576 (6170-6304) | |
| 382-515, gnl|panTro1|chr8 (103668683-103668825) | |
| 382-515, gnl|rheMac2|chr9 (99775888-99776030) | |
| 382-515, gnl|rn3|chr1 (249430933-249430792) | |
| 382-515, gnl|tetNig1|chr17 (4588520-4588386) | |
| 382-515, gnl|xenTro1|scaffold_5 (1727243-1727381) | |
| 895-1532, gnl|bosTau2|chr26 (11846989-11846353) | |
| 895-1532, gnl|Hg17|chr10 (101902110-101901470) | |
| 895-1532, gnl|Mm7|chr19 (43931031-43930404) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 70-198, gnl|bosTau2|chr26 (11886272-11886144) | |
| 70-198, gnl|Hg17|chr10 (101935384-101935256) | |
| 70-198, gnl|Mm7|chr19 (43963268-43963140) | |
| 382-515, gnl|bosTau2|chr26 (11873403-11873270) | |
| 382-515, gnl|canFam2|chr28 (15945712-15945854) | |
| 382-515, gnl|danRer3|chr13 (27750163-27750307) | |
| 382-515, gnl|dasNov1|scaffold_30634 (46052-45912) | |
| 382-515, gnl|echTel1|scaffold_323038 (16789-16924) | |
| 382-515, gnl|fr1|chrUn (16529297-16529431) | |
| 382-515, gnl|galGal2|chr6 (8678337-8678202) | |
| 382-515, gnl|hg17|chr10 (101925679-101925821) | |
| 382-515, gnl|Hg17|chr10 (101925820-101925687) | |
| 382-515, gnl|loxAfr1|scaffold_30366 (40497-40631) | |
| 382-515, gnl|mm7|chr19 (43952912-43953053) | |
| 382-515, gnl|Mm7|chr19 (43953051-43952919) | |
| 382-515, gnl|monDom2|scaffold_41 (10853522-10853664) | |
| 382-515, gnl|oryCun1|scaffold_212576 (6170-6304) | |
| 382-515, gnl|panTro1|chr8 (103668683-103668825) | |
| 382-515, gnl|rheMac2|chr9 (99775888-99776030) | |
| 382-515, gnl|rn3|chr1 (249430933-249430792) | |
| 382-515, gnl|tetNig1|chr17 (4588520-4588386) | |
| 382-515, gnl|xenTro1|scaffold_5 (1727243-1727381) | |
| 895-1532, gnl|bosTau2|chr26 (11846989-11846353) | |
| 895-1532, gnl|Hg17|chr10 (101902110-101901470) | |
| 895-1532, gnl|Mm7|chr19 (43931031-43930404) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cte (0.29274) | |
| mas (0.210305) | |
| mga (0.160205) | |
| cli (0.152812) | |
| ski (0.146735) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| mas (0.210305) | |
| mga (0.160205) | |
| cli (0.152812) | |
| ski (0.146735) | |
| cty (0.10408) | |
| eje (0.0988338) |