Non-Coding RNA Search

Ss1.1-Pig4-TMW8031D01.3

Sequence:


               
               TCATCCTCCGGGCGCCCACCCGACTCACCGATGTATGACCTGCCATATTCAGTAAGAAAC
TGAGATTGGAATATTTAATGACGCCAATCCCAGGGCTTCAGAACCGCTTCGCAGCCTATT
TCCCGAAATGCACTCAGACTCAGCCAGCAAAGACCTGCCCGGCCGCATTCTGTTGGACAT
GGACAATGATACAGAAAGTACCGCCCTGTGAAGAAAGCCACCCCGCCCCCGCCCCTGGAC
CCCTTCCACCCTGGCGAGTGGAACAGGGGCCAGGCAGACATTCATCTTCACAGACCCAAC
AGCGAGAAGCTTTCAGTGGAAGGAAAAAGAAGGCCTCCCCAGCCCTGCAGGACCCGGCCT
CCTTCCCAGCCCCAGGAGAGCAGGGAGGCTGACACTTAAAGCTGAATGACCTGTGTCTTG
AAGAAGTCGGCTTTCTTTACATGGGAAAGAATCATGCCAAAAGAAAGAAAGCAAGAAAGA
ATTTTTTTTGAAAAGAGAAAGCAAAAAAGAATTACCTGCAGCAGAAAGCGCATCCCGTGT
AGGAAGCTTGTGTCGCTGCTGTGAATGCCGGCAGCAGCCTCAGCAAATTGGAATGAAGGA
AAAGCCATGCGCTGAGCACCTGTTTCATCAAATGCATTCATTACACGAGTCACCTAAACT
TCCCGCTCCGTGGACTTTTCATGCTCCTGTACCTTCAAGGGAGGCTGCTCTCCCTCAGAC
CCGCTGCAGAATCATTTCGTACGACGTGTGGGCTGCGTCTCCCCCTCAGAACCACGAGCA
TCGGTGGTGACCGCTGGATCCGTCACCTCAGCAAACGAGATCGCCCTGTGCCTTGTCAGA
TTGCCAGAATGAAGAGAGAAATGTACTGTGTTTGTTTGTTTGTTCGTTTTCCAAACCATG
TAATTGCTACTTGATAAGGACCGAACATTATTCTAGTCTCATGTTTAATTTGAATTAAAT
ATATTCTGTGGTTTAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATCCTCCGGGCGCCCACCCGACTCACCGATGTATGACCTGCCATATTCAGTAAGAAAC
TGAGATTGGAATATTTAATGACGCCAATCCCAGGGCTTCAGAACCGCTTCGCAGCCTATT
TCCCGAAATGCACTCAGACTCAGCCAGCAAAGACCTGCCCGGCCGCATTCTGTTGGACAT
GGACAATGATACAGAAAGTACCGCCCTGTGAAGAAAGCCACCCCGCCCCCGCCCCTGGAC
CCCTTCCACCCTGGCGAGTGGAACAGGGGCCAGGCAGACATTCATCTTCACAGACCCAAC
AGCGAGAAGCTTTCAGTGGAAGGAAAAAGAAGGCCTCCCCAGCCCTGCAGGACCCGGCCT
CCTTCCCAGCCCCAGGAGAGCAGGGAGGCTGACACTTAAAGCTGAATGACCTGTGTCTTG
AAGAAGTCGGCTTTCTTTACATGGGAAAGAATCATGCCAAAAGAAAGAAAGCAAGAAAGA
ATTTTTTTTGAAAAGAGAAAGCAAAAAAGAATTACCTGCAGCAGAAAGCGCATCCCGTGT
AGGAAGCTTGTGTCGCTGCTGTGAATGCCGGCAGCAGCCTCAGCAAATTGGAATGAAGGA
AAAGCCATGCGCTGAGCACCTGTTTCATCAAATGCATTCATTACACGAGTCACCTAAACT
TCCCGCTCCGTGGACTTTTCATGCTCCTGTACCTTCAAGGGAGGCTGCTCTCCCTCAGAC
CCGCTGCAGAATCATTTCGTACGACGTGTGGGCTGCGTCTCCCCCTCAGAACCACGAGCA
TCGGTGGTGACCGCTGGATCCGTCACCTCAGCAAACGAGATCGCCCTGTGCCTTGTCAGA
TTGCCAGAATGAAGAGAGAAATGTACTGTGTTTGTTTGTTTGTTCGTTTTCCAAACCATG
TAATTGCTACTTGATAAGGACCGAACATTATTCTAGTCTCATGTTTAATTTGAATTAAAT
ATATTCTGTGGTTTAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               48-477, gnl|bosTau2|chr21 (33804858-33805270)
               

               
               48-477, gnl|Hg17|chr16 (24839083-24838692)
               

               
               48-477, gnl|Mm7|chr7 (119382814-119382399)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-477, gnl|bosTau2|chr21 (33804858-33805270)
               

               
               48-477, gnl|Hg17|chr16 (24839083-24838692)
               

               
               48-477, gnl|Mm7|chr7 (119382814-119382399)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               cje (0.991408)
               

               
               cmu (0.372787)
               

               
               cut (0.339847)
               

               
               fhi (0.339155)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.991408)
               

               
               cmu (0.372787)
               

               
               cut (0.339847)
               

               
               fhi (0.339155)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

	48-477, gnl\|bosTau2\|chr21 (33804858-33805270)
	48-477, gnl\|Hg17\|chr16 (24839083-24838692)
	48-477, gnl\|Mm7\|chr7 (119382814-119382399)

	cje (0.991408)
	cmu (0.372787)
	cut (0.339847)
	fhi (0.339155)
	ova (0.258264)
	cbe (0.239234)
	hea (0.204499)
	fcc (0.197785)
	col (0.195008)
	nep (0.183925)
	gul (0.177588)
	fty (0.17584)
	ton (0.1755)
	fbs (0.175346)
	duo (0.172801)
	cag (0.151194)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	che (0.136314)
	pla (0.133672)
	bla (0.124347)
	pgl (0.118483)
	nbm (0.0993246)