Ss1.1-Pig4-TMW8031D05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTCCGGGTCTCGGGGGACAGAGCATGACAGAGCGCCAGGCTTTACCATATCAAAATGC TGACTCTTACCACCACCACCACCACACCAGCCCCCAGCATCTTCTGCAAATCAGGGCGCA AGAATGTATCTCACAGGCTTCCTCAGCCAGCCCGACCCACGCATACGCTCAGCAGCCGGC GCTGGTACACTCAGAGAGCATGGAGGAGGAGTGCTCCTGTGACGGGGCCAAGGACGGCTT TCCCGACAGGAAGAGTGCGAGCACGCTGGCCAAGGGCTGCCACGACAGCCCCTTGCTCTT GAGTACTGGCGGGCCTGGGGACCCCGAGTCTTTACTAGGAACTGTGAGCCACGCACAGGA GCTGGGGCTGCATCCATACCGACAGGCAGCTGCTGCGTTCCCTAGAAATAAGGTGTCCAG CCGAGAGTCTGTCATAGGGAACTGCATGGATAGAAGTTCTCCAGGACAAGCAATGGAGCT GCCAGATCACAATGGACTTGGGTACCCCGCACACCCCTCAGTCAGTGAGCACCACAGGCC CCGGACCCTCCAGAGACATCACACGATCCAGAACAGCGACGACGCTTACGTACAGCTGGA TAACTTGCCAGGCATGAGTCTCGTGGCTGGGAAAGCACTTAGTTCTGCCCGGATGTCAGA TGCAGTTCTCAGCCAGTCGTCGCTCATGGGGAGCCAGCAGTTCCAGGATGGGGAAAACGA GGAATGTGGGGAGCATCTGGGAGCTCACGAGCACGCAGACCTGACTGACGGCAGCCAGCA TTTAAACTCCTCCTGCTACCCATCAACGTGCATTACAGACATCCTGCTCAGCTACAAGCA CCCCGAGGTCTCCTTCAGCATGGAACAGGCAGGCGTGTAGCAGGCGATGGAGAGTTTATG TACAGCGCGGGAATGAAGAGGTTGACTTTAAACCAACAGTATCTGGCAGCATTGCGCCAA ACTGCCATCATGTTCACCTCCGCCCAGAGTGTCGGCTCCTTTCTTCACACTTGGTTCATC AGTGCGCTGTCCTTTCGGGCTCTGAGGGGGTTTTGCCATGTTCTCTTGTATGACCAAGTC ACCATGGAAATAAACAGGAAATCCATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGG GGGGGGCCTTTTTAAATTTTCCTTGGGGGGGCCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTCCGGGTCTCGGGGGACAGAGCATGACAGAGCGCCAGGCTTTACCATATCAAAATGC TGACTCTTACCACCACCACCACCACACCAGCCCCCAGCATCTTCTGCAAATCAGGGCGCA AGAATGTATCTCACAGGCTTCCTCAGCCAGCCCGACCCACGCATACGCTCAGCAGCCGGC GCTGGTACACTCAGAGAGCATGGAGGAGGAGTGCTCCTGTGACGGGGCCAAGGACGGCTT TCCCGACAGGAAGAGTGCGAGCACGCTGGCCAAGGGCTGCCACGACAGCCCCTTGCTCTT GAGTACTGGCGGGCCTGGGGACCCCGAGTCTTTACTAGGAACTGTGAGCCACGCACAGGA GCTGGGGCTGCATCCATACCGACAGGCAGCTGCTGCGTTCCCTAGAAATAAGGTGTCCAG CCGAGAGTCTGTCATAGGGAACTGCATGGATAGAAGTTCTCCAGGACAAGCAATGGAGCT GCCAGATCACAATGGACTTGGGTACCCCGCACACCCCTCAGTCAGTGAGCACCACAGGCC CCGGACCCTCCAGAGACATCACACGATCCAGAACAGCGACGACGCTTACGTACAGCTGGA TAACTTGCCAGGCATGAGTCTCGTGGCTGGGAAAGCACTTAGTTCTGCCCGGATGTCAGA TGCAGTTCTCAGCCAGTCGTCGCTCATGGGGAGCCAGCAGTTCCAGGATGGGGAAAACGA GGAATGTGGGGAGCATCTGGGAGCTCACGAGCACGCAGACCTGACTGACGGCAGCCAGCA TTTAAACTCCTCCTGCTACCCATCAACGTGCATTACAGACATCCTGCTCAGCTACAAGCA CCCCGAGGTCTCCTTCAGCATGGAACAGGCAGGCGTGTAGCAGGCGATGGAGAGTTTATG TACAGCGCGGGAATGAAGAGGTTGACTTTAAACCAACAGTATCTGGCAGCATTGCGCCAA ACTGCCATCATGTTCACCTCCGCCCAGAGTGTCGGCTCCTTTCTTCACACTTGGTTCATC AGTGCGCTGTCCTTTCGGGCTCTGAGGGGGTTTTGCCATGTTCTCTTGTATGACCAAGTC ACCATGGAAATAAACAGGAAATCCATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGG GGGGGGCCTTTTTAAATTTTCCTTGGGGGGGCCAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-425, gnl|bosTau2|chr15 (13167199-13167620) | |
| 1-425, gnl|Hg17|chr11 (116234157-116233736) | |
| 1-425, gnl|Mm7|chr9 (46170261-46170685) | |
| 590-722, gnl|bosTau2|chr15 (13177443-13177575) | |
| 590-722, gnl|canFam2|chr5 (19736459-19736615) | |
| 590-722, gnl|dasNov1|scaffold_140672 (6118-5979) | |
| 590-722, gnl|echTel1|scaffold_310681 (5819-5662) | |
| 590-722, gnl|fr1|chrUn (14608092-14607941) | |
| 590-722, gnl|galGal2|chr24 (4805634-4805486) | |
| 590-722, gnl|Hg17|chr11 (116223534-116223402) | |
| 590-722, gnl|hg17|chr22_random (3502-3659) | |
| 590-722, gnl|loxAfr1|scaffold_14984 (39683-39840) | |
| 590-722, gnl|mm7|chr9 (46178324-46178479) | |
| 590-722, gnl|Mm7|chr9 (46178333-46178465) | |
| 590-722, gnl|monDom2|scaffold_2 (122482323-122482479) | |
| 590-722, gnl|oryCun1|scaffold_124455 (4127-4284) | |
| 590-722, gnl|panTro1|chr9 (118223543-118223386) | |
| 590-722, gnl|rheMac2|chr14 (115244822-115244665) | |
| 590-722, gnl|xenTro1|scaffold_18 (1443897-1444043) | |
| 894-1109, gnl|bosTau2|chr15 (13179520-13179735) | |
| 894-1109, gnl|canFam2|chr5 (19738263-19738453) | |
| 894-1109, gnl|dasNov1|scaffold_140672 (4000-3811) | |
| 894-1109, gnl|echTel1|scaffold_310681 (3755-3594) | |
| 894-1109, gnl|galGal2|chr24 (4804533-4804342) | |
| 894-1109, gnl|Hg17|chr11 (116221555-116221333) | |
| 894-1109, gnl|hg17|chr22_random (5474-5665) | |
| 894-1109, gnl|loxAfr1|scaffold_14984 (41634-41827) | |
| 894-1109, gnl|mm7|chr9 (46180179-46180364) | |
| 894-1109, gnl|Mm7|chr9 (46180192-46180407) | |
| 894-1109, gnl|monDom2|scaffold_2 (122486972-122487164) | |
| 894-1109, gnl|oryCun1|scaffold_132176 (928-1124) | |
| 894-1109, gnl|panTro1|chr9 (118221568-118221377) | |
| 894-1109, gnl|rheMac2|chr14 (115242861-115242670) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-425, gnl|bosTau2|chr15 (13167199-13167620) | |
| 1-425, gnl|Hg17|chr11 (116234157-116233736) | |
| 1-425, gnl|Mm7|chr9 (46170261-46170685) | |
| 590-722, gnl|bosTau2|chr15 (13177443-13177575) | |
| 590-722, gnl|canFam2|chr5 (19736459-19736615) | |
| 590-722, gnl|dasNov1|scaffold_140672 (6118-5979) | |
| 590-722, gnl|echTel1|scaffold_310681 (5819-5662) | |
| 590-722, gnl|fr1|chrUn (14608092-14607941) | |
| 590-722, gnl|galGal2|chr24 (4805634-4805486) | |
| 590-722, gnl|Hg17|chr11 (116223534-116223402) | |
| 590-722, gnl|hg17|chr22_random (3502-3659) | |
| 590-722, gnl|loxAfr1|scaffold_14984 (39683-39840) | |
| 590-722, gnl|mm7|chr9 (46178324-46178479) | |
| 590-722, gnl|Mm7|chr9 (46178333-46178465) | |
| 590-722, gnl|monDom2|scaffold_2 (122482323-122482479) | |
| 590-722, gnl|oryCun1|scaffold_124455 (4127-4284) | |
| 590-722, gnl|panTro1|chr9 (118223543-118223386) | |
| 590-722, gnl|rheMac2|chr14 (115244822-115244665) | |
| 590-722, gnl|xenTro1|scaffold_18 (1443897-1444043) | |
| 894-1109, gnl|bosTau2|chr15 (13179520-13179735) | |
| 894-1109, gnl|canFam2|chr5 (19738263-19738453) | |
| 894-1109, gnl|dasNov1|scaffold_140672 (4000-3811) | |
| 894-1109, gnl|echTel1|scaffold_310681 (3755-3594) | |
| 894-1109, gnl|galGal2|chr24 (4804533-4804342) | |
| 894-1109, gnl|Hg17|chr11 (116221555-116221333) | |
| 894-1109, gnl|hg17|chr22_random (5474-5665) | |
| 894-1109, gnl|loxAfr1|scaffold_14984 (41634-41827) | |
| 894-1109, gnl|mm7|chr9 (46180179-46180364) | |
| 894-1109, gnl|Mm7|chr9 (46180192-46180407) | |
| 894-1109, gnl|monDom2|scaffold_2 (122486972-122487164) | |
| 894-1109, gnl|oryCun1|scaffold_132176 (928-1124) | |
| 894-1109, gnl|panTro1|chr9 (118221568-118221377) | |
| 894-1109, gnl|rheMac2|chr14 (115242861-115242670) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| fce (0.271592) | |
| bla (0.248694) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cut (0.169924) | |
| csp (0.161186) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| bla (0.248694) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cut (0.169924) | |
| csp (0.161186) |