Ss1.1-Pig4-TMW8031D08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGTGGAAAACAAAGTGTGAGGAGAGCCAGGCAGAGCTGGAGGCAGCTCTGAAGGAATCC CGCTCCTTGAGCACCGAGCTCTTCAAGCTGAAAAATGCCTACGAAGAAGCCTTAGATCAA CTTGAAACTGTGAAGCGAGAAAATAAGAACTTGGAGCAGGAGATAGCAGATCTCACAGAA CAAATTGCTGAGAACGGTAAAACCATCCATGAACTGGAGAAATCAAGAAAGCAGATCGAG CTGGAGAAGGCTGATATCCAGCTGGCTCTTGAGGAAGCAGAGGCCGCCCTTGAGCACGAA GAGGCCAAGATCCTCCGAATCCAGCTGGAACTGACCCAGGTGAAATCGGAAATCGACAGG AAGATGGCTGAGAAAGACGAAGAGATCGAGCAGCTCAAGAGGAACTACCAGAGAACCGTG GAGACGATGCAGAGCGCCTTGGACGCCGAGGTGCGGAGCCGCAACGAGGCCATCAGGATC AAGAAGAAGATGGAGGGGGACCTGAACGAGATCGAGATCCAGCTGAGCCACGCCAACCGC CAGGCCGCGGAGACCCTCAAACACCTGCGGGGCGTCCAAGGACAGCTGAAGGACACCCAG CTCCACCTGGACGACGCTCTCCGAGGCCAGGAGGACCTGAAGGAGCAGCTGGCCATCGTG GAGCGCAGAGCCAGCCTGCTGCAGGCCGAGGTGGAGGAGCTGCGGGCCTCCCTGGAGCAG ACGGAGAGGGCCCGGAAACTGGCAGAGCAGGAGCTCCTGGACGCCAACGAGAGGGTGCAG CTGCTCCACACCCAGAACACCAGCCTCATCCACACCAAGAAGAAGCTGGAGACGGACCTG ATGCAGCTCCAGAGCGAGGTCGAGGACGCCAGCAGGGATGCGAGGAACGCCGAGGAGAAG GCGAAGAAGGCCACCACCGACGCGGCCATGATGGCCGAGGAGCTGAAGAAGGAGCAGGAC ACCAGCGCCCACCTGGAGCGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAG CACCGCCTGGACGAGGCGGAGCAGCTGGCCCTGAAGGGTGGGAAGAAGCAGATCCAGAAG CTGGAGGCCAGAATCCGAGAGCTGGAGTTTGAGCTTGAGGGGGAGCAGAAGAAGAACACG GAGTCTGTCAAGGGCCTCAGGAAATACGAGCGGCGGGTCAAGGAGTTAACTTACCAGAGT GAAGAGGACAGGAAGAATGTGCTGAGATTACAGGACCTGGTGGACAAACTTCAAGCGAAG GTCAAGTCCTACAAGAGGCAGGCGGAGGAGGCTGATGAACAAGCCAATGCTCATCTCACC AAGTTCCGAAAAGCTCAGCATGAGCTCGAGGAGGCTGAAGAACGGGCTGATATCGCCGAA TCTCAGGTCAATAAGCTTCGCGCAAAGACCCGAGACTTCACCTCCAGCCGGATGGTGGTC CATGAGAGCGAAGAGTGAGCGGTCCTCCTCTGGAACAGGACAGAAAATATGCAAAATGTG TATTTTCATGGTTCCTGACCCTTCATTTCCATGTGACTGCTTTTCACATGCAATAAACCT TGTCTTCAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGTGGAAAACAAAGTGTGAGGAGAGCCAGGCAGAGCTGGAGGCAGCTCTGAAGGAATCC CGCTCCTTGAGCACCGAGCTCTTCAAGCTGAAAAATGCCTACGAAGAAGCCTTAGATCAA CTTGAAACTGTGAAGCGAGAAAATAAGAACTTGGAGCAGGAGATAGCAGATCTCACAGAA CAAATTGCTGAGAACGGTAAAACCATCCATGAACTGGAGAAATCAAGAAAGCAGATCGAG CTGGAGAAGGCTGATATCCAGCTGGCTCTTGAGGAAGCAGAGGCCGCCCTTGAGCACGAA GAGGCCAAGATCCTCCGAATCCAGCTGGAACTGACCCAGGTGAAATCGGAAATCGACAGG AAGATGGCTGAGAAAGACGAAGAGATCGAGCAGCTCAAGAGGAACTACCAGAGAACCGTG GAGACGATGCAGAGCGCCTTGGACGCCGAGGTGCGGAGCCGCAACGAGGCCATCAGGATC AAGAAGAAGATGGAGGGGGACCTGAACGAGATCGAGATCCAGCTGAGCCACGCCAACCGC CAGGCCGCGGAGACCCTCAAACACCTGCGGGGCGTCCAAGGACAGCTGAAGGACACCCAG CTCCACCTGGACGACGCTCTCCGAGGCCAGGAGGACCTGAAGGAGCAGCTGGCCATCGTG GAGCGCAGAGCCAGCCTGCTGCAGGCCGAGGTGGAGGAGCTGCGGGCCTCCCTGGAGCAG ACGGAGAGGGCCCGGAAACTGGCAGAGCAGGAGCTCCTGGACGCCAACGAGAGGGTGCAG CTGCTCCACACCCAGAACACCAGCCTCATCCACACCAAGAAGAAGCTGGAGACGGACCTG ATGCAGCTCCAGAGCGAGGTCGAGGACGCCAGCAGGGATGCGAGGAACGCCGAGGAGAAG GCGAAGAAGGCCACCACCGACGCGGCCATGATGGCCGAGGAGCTGAAGAAGGAGCAGGAC ACCAGCGCCCACCTGGAGCGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAG CACCGCCTGGACGAGGCGGAGCAGCTGGCCCTGAAGGGTGGGAAGAAGCAGATCCAGAAG CTGGAGGCCAGAATCCGAGAGCTGGAGTTTGAGCTTGAGGGGGAGCAGAAGAAGAACACG GAGTCTGTCAAGGGCCTCAGGAAATACGAGCGGCGGGTCAAGGAGTTAACTTACCAGAGT GAAGAGGACAGGAAGAATGTGCTGAGATTACAGGACCTGGTGGACAAACTTCAAGCGAAG GTCAAGTCCTACAAGAGGCAGGCGGAGGAGGCTGATGAACAAGCCAATGCTCATCTCACC AAGTTCCGAAAAGCTCAGCATGAGCTCGAGGAGGCTGAAGAACGGGCTGATATCGCCGAA TCTCAGGTCAATAAGCTTCGCGCAAAGACCCGAGACTTCACCTCCAGCCGGATGGTGGTC CATGAGAGCGAAGAGTGAGCGGTCCTCCTCTGGAACAGGACAGAAAATATGCAAAATGTG TATTTTCATGGTTCCTGACCCTTCATTTCCATGTGACTGCTTTTCACATGCAATAAACCT TGTCTTCAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 39-156, - strand, RNAz p=0.612044 | |
| 1428-1571, + strand, RNAz p=0.998635 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 39-156, - strand, RNAz p=0.612044 | |
| 1428-1571, + strand, RNAz p=0.998635 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_002470, + |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-156, gnl|bosTau2|chr10 (13738179-13738334) | |
| 1-156, gnl|Hg17|chr14 (22926963-22926808) | |
| 1-156, gnl|Mm7|chr14 (49815034-49814879) | |
| 281-596, gnl|bosTau2|chr10 (13721447-13721131) | |
| 281-596, gnl|Hg17|chr14 (22955363-22955047) | |
| 281-596, gnl|Mm7|chr14 (49840654-49840338) | |
| 788-920, gnl|bosTau2|chr10 (13720593-13720461) | |
| 788-920, gnl|canFam2|chr8 (6665589-6665721) | |
| 788-920, gnl|danRer3|chr24 (32711999-32712127) | |
| 788-920, gnl|dasNov1|scaffold_31623 (11706-11838) | |
| 788-920, gnl|echTel1|scaffold_322757 (13737-13605) | |
| 788-920, gnl|fr1|chrUn (258644420-258644562) | |
| 788-920, gnl|galGal2|chr18 (367529-367658) | |
| 788-920, gnl|hg17|chr14 (22954430-22954562) | |
| 788-920, gnl|Hg17|chr14 (22954561-22954431) | |
| 788-920, gnl|loxAfr1|scaffold_6807 (38877-39009) | |
| 788-920, gnl|mm7|chr14 (49839657-49839789) | |
| 788-920, gnl|Mm7|chr14 (49839790-49839658) | |
| 788-920, gnl|monDom2|scaffold_12 (26272563-26272431) | |
| 788-920, gnl|oryCun1|scaffold_204398 (5259-5391) | |
| 788-920, gnl|panTro1|chr15 (21922237-21922369) | |
| 788-920, gnl|rheMac2|chr7 (86254955-86255087) | |
| 788-920, gnl|rn3|chr15 (33091200-33091332) | |
| 788-920, gnl|tetNig1|chrUn_random (96685960-96685833) | |
| 788-920, gnl|xenTro1|scaffold_53 (63119-62987) | |
| 922-1197, gnl|bosTau2|chr10 (13720368-13720093) | |
| 922-1197, gnl|Hg17|chr14 (22954319-22954044) | |
| 922-1197, gnl|Mm7|chr14 (49839549-49839274) | |
| 1294-1426, gnl|bosTau2|chr10 (13718989-13718857) | |
| 1294-1426, gnl|Hg17|chr14 (22952942-22952810) | |
| 1294-1426, gnl|Mm7|chr14 (49838097-49837965) | |
| 1428-1571, gnl|bosTau2|chr19 (22701948-22701805) | |
| 1428-1571, gnl|Hg17|chr17 (10472725-10472572) | |
| 1428-1571, gnl|Mm7|chr11 (67183702-67183848) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-156, gnl|bosTau2|chr10 (13738179-13738334) | |
| 1-156, gnl|Hg17|chr14 (22926963-22926808) | |
| 1-156, gnl|Mm7|chr14 (49815034-49814879) | |
| 281-596, gnl|bosTau2|chr10 (13721447-13721131) | |
| 281-596, gnl|Hg17|chr14 (22955363-22955047) | |
| 281-596, gnl|Mm7|chr14 (49840654-49840338) | |
| 788-920, gnl|bosTau2|chr10 (13720593-13720461) | |
| 788-920, gnl|canFam2|chr8 (6665589-6665721) | |
| 788-920, gnl|danRer3|chr24 (32711999-32712127) | |
| 788-920, gnl|dasNov1|scaffold_31623 (11706-11838) | |
| 788-920, gnl|echTel1|scaffold_322757 (13737-13605) | |
| 788-920, gnl|fr1|chrUn (258644420-258644562) | |
| 788-920, gnl|galGal2|chr18 (367529-367658) | |
| 788-920, gnl|hg17|chr14 (22954430-22954562) | |
| 788-920, gnl|Hg17|chr14 (22954561-22954431) | |
| 788-920, gnl|loxAfr1|scaffold_6807 (38877-39009) | |
| 788-920, gnl|mm7|chr14 (49839657-49839789) | |
| 788-920, gnl|Mm7|chr14 (49839790-49839658) | |
| 788-920, gnl|monDom2|scaffold_12 (26272563-26272431) | |
| 788-920, gnl|oryCun1|scaffold_204398 (5259-5391) | |
| 788-920, gnl|panTro1|chr15 (21922237-21922369) | |
| 788-920, gnl|rheMac2|chr7 (86254955-86255087) | |
| 788-920, gnl|rn3|chr15 (33091200-33091332) | |
| 788-920, gnl|tetNig1|chrUn_random (96685960-96685833) | |
| 788-920, gnl|xenTro1|scaffold_53 (63119-62987) | |
| 922-1197, gnl|bosTau2|chr10 (13720368-13720093) | |
| 922-1197, gnl|Hg17|chr14 (22954319-22954044) | |
| 922-1197, gnl|Mm7|chr14 (49839549-49839274) | |
| 1294-1426, gnl|bosTau2|chr10 (13718989-13718857) | |
| 1294-1426, gnl|Hg17|chr14 (22952942-22952810) | |
| 1294-1426, gnl|Mm7|chr14 (49838097-49837965) | |
| 1428-1571, gnl|bosTau2|chr19 (22701948-22701805) | |
| 1428-1571, gnl|Hg17|chr17 (10472725-10472572) | |
| 1428-1571, gnl|Mm7|chr11 (67183702-67183848) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| eru (2.04082) | |
| ese (1.51803) | |
| eye (0.341006) | |
| cbe (0.239234) | |
| cmu (0.186393) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (2.04082) | |
| ese (1.51803) | |
| eye (0.341006) | |
| cbe (0.239234) | |
| cmu (0.186393) |