Non-Coding RNA Search

Ss1.1-Pig4-TMW8031D12.5

Sequence:


               
               TGCCGAGGGTGGTCTTATGACCGGGCCAGGTGCTGACCCTTGGAACGAGGCAACCAGCCC
CATCCTTCTATGGGACTCGGGCAAGCATTGAGAGTTCCCAGCACAGAAATCCTTCCTGCT
CAGGCTTTCATTCTAAAACTACAGCCTTCATTAAAGCTGAACTTTCTGGGTAGCTGAGCC
TATATGCCTGGCATCTGAATGAGCGCTCTCTTTGTCACCGGGTGGCTGGAGATTCATTTT
GCCGGCTCCAGGCAAACAATACATGTGTTCTTGTTTGTGTTTGCCAGGCAGGCAGATGTC
TGAGATGTGAGAAGCTTTTCTTTTCCCATGGCATCGATCCTGACTTAGAGCTAAAGTAAC
GATCACTGAGACATCACGTTGAATTAAAAGAACTCAGATCTTTGTCCTCTAAGGCAGGAC
AGCGAAGTTATTAAGAAGCATTTCATTGTAGCGTCTGCCCACAATGTCATCTGGCATCAT
TTTCTTGGCCCAGAAAGCCTTACCTGGCCTCTAGGACAGCCCCTGGCATGACAATGATCT
TGTGGCTTTGGAATTCAAATTCTTCTTTTGTAGAAGCTCAAAATGAAGCCACAGCAAGAC
CAGAGAATTTCTTCATGCAGCCTCTTTTACAGTAGGCACCCCCACCCCTCACCCCGTGAC
AGTGAGCAATCCAGAACTGGCCACACACCTCATCTCAGATGCCTTTCTTCCCTGTCACCC
TCCCTCCATTGTTGAAGCCACTTGGGATGAGTTGGATATTTCCAAAAGCCATGAGAAGTA
GCCTACCTGTGACATTTAGAGGCCAAGCAATTGAGGGAGAGTTTCCTTTTTCCTCTGTTA
TCAAAGCAGAGGGACGTACCCCCTCCACCTTCAAACGAGGGTTGCTTTTGCCAAACTATA
TTTGAAGGGGAGCAGACCACACGGGCAGTGAGAGCCCAAGTGTCATCCAGCACTAACAGT
GCTCCCTCTTGCCTGTGTCGCTGCTCCTGCCTCTGCCCCTGCGGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCGAGGGTGGTCTTATGACCGGGCCAGGTGCTGACCCTTGGAACGAGGCAACCAGCCC
CATCCTTCTATGGGACTCGGGCAAGCATTGAGAGTTCCCAGCACAGAAATCCTTCCTGCT
CAGGCTTTCATTCTAAAACTACAGCCTTCATTAAAGCTGAACTTTCTGGGTAGCTGAGCC
TATATGCCTGGCATCTGAATGAGCGCTCTCTTTGTCACCGGGTGGCTGGAGATTCATTTT
GCCGGCTCCAGGCAAACAATACATGTGTTCTTGTTTGTGTTTGCCAGGCAGGCAGATGTC
TGAGATGTGAGAAGCTTTTCTTTTCCCATGGCATCGATCCTGACTTAGAGCTAAAGTAAC
GATCACTGAGACATCACGTTGAATTAAAAGAACTCAGATCTTTGTCCTCTAAGGCAGGAC
AGCGAAGTTATTAAGAAGCATTTCATTGTAGCGTCTGCCCACAATGTCATCTGGCATCAT
TTTCTTGGCCCAGAAAGCCTTACCTGGCCTCTAGGACAGCCCCTGGCATGACAATGATCT
TGTGGCTTTGGAATTCAAATTCTTCTTTTGTAGAAGCTCAAAATGAAGCCACAGCAAGAC
CAGAGAATTTCTTCATGCAGCCTCTTTTACAGTAGGCACCCCCACCCCTCACCCCGTGAC
AGTGAGCAATCCAGAACTGGCCACACACCTCATCTCAGATGCCTTTCTTCCCTGTCACCC
TCCCTCCATTGTTGAAGCCACTTGGGATGAGTTGGATATTTCCAAAAGCCATGAGAAGTA
GCCTACCTGTGACATTTAGAGGCCAAGCAATTGAGGGAGAGTTTCCTTTTTCCTCTGTTA
TCAAAGCAGAGGGACGTACCCCCTCCACCTTCAAACGAGGGTTGCTTTTGCCAAACTATA
TTTGAAGGGGAGCAGACCACACGGGCAGTGAGAGCCCAAGTGTCATCCAGCACTAACAGT
GCTCCCTCTTGCCTGTGTCGCTGCTCCTGCCTCTGCCCCTGCGGCCAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               488-607, - strand, RNAz p=0.932358
               

               
               713-825, + strand, RNAz p=0.902702

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               488-607, - strand, RNAz p=0.932358
               

               
               713-825, + strand, RNAz p=0.902702

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC017905, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC017905, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-863, gnl|bosTau2|chr21 (16069148-16068307)
               

               
               1-863, gnl|Hg17|chr15 (87543174-87544048)
               

               
               1-863, gnl|Mm7|chr7 (75231632-75232469)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-863, gnl|bosTau2|chr21 (16069148-16068307)
               

               
               1-863, gnl|Hg17|chr15 (87543174-87544048)
               

               
               1-863, gnl|Mm7|chr7 (75231632-75232469)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	488-607, - strand, RNAz p=0.932358
	713-825, + strand, RNAz p=0.902702

	1-863, gnl\|bosTau2\|chr21 (16069148-16068307)
	1-863, gnl\|Hg17\|chr15 (87543174-87544048)
	1-863, gnl\|Mm7\|chr7 (75231632-75232469)