Non-Coding RNA Search

Ss1.1-Pig4-TMW8031D18.5

Sequence:


               
               TGTTCTAAATGAAACCCTCAGAACATAGGACTCATGGGGAAGCTGCTGTGCGTTTCAGAA
GAACTGCTCATCAGAACCTCCAGAATCGCTGCAGAAATTTTTATAATTTTGCAACTTCTT
TTTTATATGAAACTTTTGTGCTGTCTACCTGTCAGGGCTTCTGAAGCCTCTGATAATTTA
AAAAGTTAATGAGCATGTGTTTGAGCAGAGAAGAAAGTGAAACCATCAGTACTGTGTTGG
ACACTTTTTCCTCCCTGATTATGGAGGAATCTCTGAACGCTCTTCTCTGTCATCTCCATG
ACAAAGCTGAACATGTATTAAAGGTGATGCTGCCTTTGTCAGACCGATTTGGAAGAAAAG
AGGCCAGCCAGCAGAGGTCAAGAGGAGAGAGGGAGTGGACTTTGTGGTCATCCCAGTGGG
TCTGTGCACGGCTGACACATCTGCTGGTGTGGCTGATGGTGAGGTGTGGATGGTGCCAGG
CAGCTTTAGCACCTCCAACAGGCCCAGGTCTGGACTTCGGCCCTTCATCCCTATTTTTCA
AGTGTTTAAAGCTGTTTTCGTTTCTTCTTTTTCCTAAATACACATTACATGGTAGTTATT
AATACTTCTTTGGGGGATGGGGCAGGGCTTTCAAATTAAATAATTTTCATAAAAATATCA
AAAATGGAAACAAGGTTACTTTTTTAAAAATTTGCTATACAAACCAAATGGCAGCTGTTG
AAAATCTCATTAAAATGAGAATAAAATGCACTTGCCAGCAGTGGTATCTTTTCCTATGGT
TGGGTCATTGTTTCATGTTACAAGTGGGTGAATATGTGGTGGATATTTGAGAGATTGTTT
TGGTCTCTGTATGGATTAGTTTTAGTTGCATAGTTTCCCATTCTAAACAGTGTTGCAAAG
TAGTAAAAGCATTGTCTTGAAAGTCACAGATCTGAGTGAATCCCACCTCCACCATTTCTT
TTGTGCCTTTGTCCTGAACCTGTTTATTTGTAAAAGGGTGACACCTTCCTCCTGGGGCTA
TTAAGAAAAGGAGACCAAATTTAACTTCAAAATACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTCTAAATGAAACCCTCAGAACATAGGACTCATGGGGAAGCTGCTGTGCGTTTCAGAA
GAACTGCTCATCAGAACCTCCAGAATCGCTGCAGAAATTTTTATAATTTTGCAACTTCTT
TTTTATATGAAACTTTTGTGCTGTCTACCTGTCAGGGCTTCTGAAGCCTCTGATAATTTA
AAAAGTTAATGAGCATGTGTTTGAGCAGAGAAGAAAGTGAAACCATCAGTACTGTGTTGG
ACACTTTTTCCTCCCTGATTATGGAGGAATCTCTGAACGCTCTTCTCTGTCATCTCCATG
ACAAAGCTGAACATGTATTAAAGGTGATGCTGCCTTTGTCAGACCGATTTGGAAGAAAAG
AGGCCAGCCAGCAGAGGTCAAGAGGAGAGAGGGAGTGGACTTTGTGGTCATCCCAGTGGG
TCTGTGCACGGCTGACACATCTGCTGGTGTGGCTGATGGTGAGGTGTGGATGGTGCCAGG
CAGCTTTAGCACCTCCAACAGGCCCAGGTCTGGACTTCGGCCCTTCATCCCTATTTTTCA
AGTGTTTAAAGCTGTTTTCGTTTCTTCTTTTTCCTAAATACACATTACATGGTAGTTATT
AATACTTCTTTGGGGGATGGGGCAGGGCTTTCAAATTAAATAATTTTCATAAAAATATCA
AAAATGGAAACAAGGTTACTTTTTTAAAAATTTGCTATACAAACCAAATGGCAGCTGTTG
AAAATCTCATTAAAATGAGAATAAAATGCACTTGCCAGCAGTGGTATCTTTTCCTATGGT
TGGGTCATTGTTTCATGTTACAAGTGGGTGAATATGTGGTGGATATTTGAGAGATTGTTT
TGGTCTCTGTATGGATTAGTTTTAGTTGCATAGTTTCCCATTCTAAACAGTGTTGCAAAG
TAGTAAAAGCATTGTCTTGAAAGTCACAGATCTGAGTGAATCCCACCTCCACCATTTCTT
TTGTGCCTTTGTCCTGAACCTGTTTATTTGTAAAAGGGTGACACCTTCCTCCTGGGGCTA
TTAAGAAAAGGAGACCAAATTTAACTTCAAAATACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               460-573, - strand, RNAz p=0.69956

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               460-573, - strand, RNAz p=0.69956

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               80-1051, gnl|bosTau2|chr11 (10029938-10028990)
               

               
               80-1051, gnl|canFam2|chr17 (54529195-54530257)
               

               
               80-1051, gnl|canFam2|chr17 (54529195-54530290)
               

               
               80-1051, gnl|dasNov1|scaffold_7238 (46322-47345)
               

               
               80-1051, gnl|dasNov1|scaffold_7238 (46322-47382)
               

               
               80-1051, gnl|echTel1|scaffold_180526 (58-831)
               

               
               80-1051, gnl|echTel1|scaffold_180526 (58-851)
               

               
               80-1051, gnl|hg17|chr10 (30707080-30708172)
               

               
               80-1051, gnl|Hg17|chr2 (71322209-71321218)
               

               
               80-1051, gnl|hg17|chr5 (174280338-174281490)
               

               
               80-1051, gnl|loxAfr1|scaffold_5410 (49094-48061)
               

               
               80-1051, gnl|loxAfr1|scaffold_5410 (49094-48021)
               

               
               80-1051, gnl|oryCun1|scaffold_211293 (7669-8682)
               

               
               80-1051, gnl|oryCun1|scaffold_211293 (7669-8721)
               

               
               80-1051, gnl|panTro1|chr4_random (21642341-21641186)
               

               
               80-1051, gnl|panTro1|chr8 (31083980-31085073)
               

               
               80-1051, gnl|rheMac2|chr6 (171363483-171364635)
               

               
               80-1051, gnl|rheMac2|chr9 (30506802-30507908)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-1051, gnl|bosTau2|chr11 (10029938-10028990)
               

               
               80-1051, gnl|canFam2|chr17 (54529195-54530257)
               

               
               80-1051, gnl|canFam2|chr17 (54529195-54530290)
               

               
               80-1051, gnl|dasNov1|scaffold_7238 (46322-47345)
               

               
               80-1051, gnl|dasNov1|scaffold_7238 (46322-47382)
               

               
               80-1051, gnl|echTel1|scaffold_180526 (58-831)
               

               
               80-1051, gnl|echTel1|scaffold_180526 (58-851)
               

               
               80-1051, gnl|hg17|chr10 (30707080-30708172)
               

               
               80-1051, gnl|Hg17|chr2 (71322209-71321218)
               

               
               80-1051, gnl|hg17|chr5 (174280338-174281490)
               

               
               80-1051, gnl|loxAfr1|scaffold_5410 (49094-48061)
               

               
               80-1051, gnl|loxAfr1|scaffold_5410 (49094-48021)
               

               
               80-1051, gnl|oryCun1|scaffold_211293 (7669-8682)
               

               
               80-1051, gnl|oryCun1|scaffold_211293 (7669-8721)
               

               
               80-1051, gnl|panTro1|chr4_random (21642341-21641186)
               

               
               80-1051, gnl|panTro1|chr8 (31083980-31085073)
               

               
               80-1051, gnl|rheMac2|chr6 (171363483-171364635)
               

               
               80-1051, gnl|rheMac2|chr9 (30506802-30507908)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               pan (0.23596)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	80-1051, gnl\|bosTau2\|chr11 (10029938-10028990)
	80-1051, gnl\|canFam2\|chr17 (54529195-54530257)
	80-1051, gnl\|canFam2\|chr17 (54529195-54530290)
	80-1051, gnl\|dasNov1\|scaffold_7238 (46322-47345)
	80-1051, gnl\|dasNov1\|scaffold_7238 (46322-47382)
	80-1051, gnl\|echTel1\|scaffold_180526 (58-831)
	80-1051, gnl\|echTel1\|scaffold_180526 (58-851)
	80-1051, gnl\|hg17\|chr10 (30707080-30708172)
	80-1051, gnl\|Hg17\|chr2 (71322209-71321218)
	80-1051, gnl\|hg17\|chr5 (174280338-174281490)
	80-1051, gnl\|loxAfr1\|scaffold_5410 (49094-48061)
	80-1051, gnl\|loxAfr1\|scaffold_5410 (49094-48021)
	80-1051, gnl\|oryCun1\|scaffold_211293 (7669-8682)
	80-1051, gnl\|oryCun1\|scaffold_211293 (7669-8721)
	80-1051, gnl\|panTro1\|chr4_random (21642341-21641186)
	80-1051, gnl\|panTro1\|chr8 (31083980-31085073)
	80-1051, gnl\|rheMac2\|chr6 (171363483-171364635)
	80-1051, gnl\|rheMac2\|chr9 (30506802-30507908)

	pan (0.23596)
	aor (0.195274)
	cmu (0.186393)
	eye (0.170503)
	hyp (0.142837)
	med (0.116252)
	eje (0.0988338)