Non-Coding RNA Search

Ss1.1-Pig4-TMW8031E03.5

Sequence:


               
               GGGACCGGGCCTTTCTACTCCCAGCCCTCCCCAGTTGTCCTATCACCTCAGGGCACCCTC
CCATCCTGGGCTCCTTCCTAAGCCCACCGCTCCTTCCTATCATCAAGGTCCCTCTGCCTC
CAGTGACAGTATTCAGTGGAAGAAACTGAGACACGTTGGTACTAGGGGGGGTGAGACTGA
GGCGTGGTGGCAGACGAAGTGGCCAGAAGAGCCCCACTTGTCAGCAGCTGAGAGAGACCA
TCAGCTGAGCTAGTGAGACTGAGGGGAGGGTCAGCGTAGCGGTGGGCCTTTTGCGCCCAG
CGCTGCTGCAGGAGGAAGCTGTGTCCAGTTCGGTGTGCCCTCGGGAACCGTGCCCCTGAC
GCCGTTATCCCCTCTTACCCCCACTCCCGGCTCAAGCCCCGCCCCTCCGGCCTCCCCACG
CCCCCTTTGCCCTCACTACCTGTATCTCACCGGCGTGTGTTCACCCTCTCCGGGTGTGCA
CACACTCTCATTCACACACACACACAGATCTCAGGAACAAACGGTCCCAGAGTCCTCCGG
GACCCCTGCCCAGGGTCTCTGCAGGTCTCTGCCCCACGCGTTCCCGTCGCTGACAAAGCC
ACCAGCTGCCTCCTTTAAGCTTGGTGCTCCGGCTCTGGGCCTTTTCGCGCGCGCGCTCTT
TTTTTCTCTCTCTTTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACCGGGCCTTTCTACTCCCAGCCCTCCCCAGTTGTCCTATCACCTCAGGGCACCCTC
CCATCCTGGGCTCCTTCCTAAGCCCACCGCTCCTTCCTATCATCAAGGTCCCTCTGCCTC
CAGTGACAGTATTCAGTGGAAGAAACTGAGACACGTTGGTACTAGGGGGGGTGAGACTGA
GGCGTGGTGGCAGACGAAGTGGCCAGAAGAGCCCCACTTGTCAGCAGCTGAGAGAGACCA
TCAGCTGAGCTAGTGAGACTGAGGGGAGGGTCAGCGTAGCGGTGGGCCTTTTGCGCCCAG
CGCTGCTGCAGGAGGAAGCTGTGTCCAGTTCGGTGTGCCCTCGGGAACCGTGCCCCTGAC
GCCGTTATCCCCTCTTACCCCCACTCCCGGCTCAAGCCCCGCCCCTCCGGCCTCCCCACG
CCCCCTTTGCCCTCACTACCTGTATCTCACCGGCGTGTGTTCACCCTCTCCGGGTGTGCA
CACACTCTCATTCACACACACACACAGATCTCAGGAACAAACGGTCCCAGAGTCCTCCGG
GACCCCTGCCCAGGGTCTCTGCAGGTCTCTGCCCCACGCGTTCCCGTCGCTGACAAAGCC
ACCAGCTGCCTCCTTTAAGCTTGGTGCTCCGGCTCTGGGCCTTTTCGCGCGCGCGCTCTT
TTTTTCTCTCTCTTTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-109, - strand, RNAz p=0.998641
               

               
               423-621, - strand, RNAz p=0.943264

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-109, - strand, RNAz p=0.998641
               

               
               423-621, - strand, RNAz p=0.943264

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               458-586, - strand, RNAmicro p=0.99603

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               458-586, - strand, RNAmicro p=0.99603

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-695, gnl|bosTau2|chr13 (41964431-41963751)
               

               
               1-695, gnl|Hg17|chr20 (256467-257180)
               

               
               1-695, gnl|Mm7|chr2 (152136673-152135960)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-695, gnl|bosTau2|chr13 (41964431-41963751)
               

               
               1-695, gnl|Hg17|chr20 (256467-257180)
               

               
               1-695, gnl|Mm7|chr2 (152136673-152135960)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               amn (0.417711)
               

               
               elu (0.385356)
               

               
               ece (0.229305)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               ece (0.229305)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

	1-109, - strand, RNAz p=0.998641
	423-621, - strand, RNAz p=0.943264

	1-695, gnl\|bosTau2\|chr13 (41964431-41963751)
	1-695, gnl\|Hg17\|chr20 (256467-257180)
	1-695, gnl\|Mm7\|chr2 (152136673-152135960)

	amn (0.417711)
	elu (0.385356)
	ece (0.229305)
	ese (0.126502)
	ecc (0.115035)