Ss1.1-Pig4-TMW8031E04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGCCCCATCAGTAGGTGGTCTCCTGCCCGAAGAAGAGCCAGTCGGTCTCCGGTCAGAA GGAGGTCCCGATCCCCCCTCAGACGCAGCCGGTCTCCCAGAAGAAGAAGCCGATCTCCTC GGAGGAGGGACAGGGCTCGGAGGAGCAGGTCCCGCCTCCGGAGGCGCTCTCGGTCTCGGG GCGGTCGCAGACGCAGGAGCAGAAGCAAGGTGAAGGAAGACAAATTCAAAGGAAGCCTTT CCGAAGGAATGAAGGCTGAGCAGGAGTCTTCGTCTGATGATAACCTTGAAGACTTTGATG TAGAGGAGGAAGACGAAGAAGCCTTGATAGAACAGAGACGGCTCCAAAGGCAAGCCATTG TTCAGAAATACCAGTACCTTGCCGAGGACAGCAACCTGTCCGTGCCGTCCGAGCCCAGCA GCCCCCAGAGCAGCCCGCGCACCCGGTCCCCTTCCCCAGACGACATCCTGGAGAGGGTCG CCGCCGACGTCAAGGAGTACGAACGGGAAAACGTGGACACGTTCGAGGCTTCCGTCAAAG CCAAGCACAACCTCATGACGGTTGAGCAGAGTAATGGTTCATCTCAGAAGAAGCTCTTGG CACCTGATATGTTTACAGAATCTGATGATATGTTTGCTGCATATTTCGATAGTGCGCGTC TTCGGGCTGCTGGCATTGGAAAAGATTTCAAAGAGAATCCCAATCTCAGGGACAACTGGA CTGATGCCGAAGGCTATTACCGTGTGAACATAGGCGAGGTCCTGGATAAGCGCTACAACG TGTACGGCTACACGGGTCAGGGCGTGTTCAGTAACGTGGTGCGTGCCAGGGACAACGCGA GGGCCAACCAGGAGGTGGCCGTGAAGATCATCCGGAACAACGAGCTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGCCCCATCAGTAGGTGGTCTCCTGCCCGAAGAAGAGCCAGTCGGTCTCCGGTCAGAA GGAGGTCCCGATCCCCCCTCAGACGCAGCCGGTCTCCCAGAAGAAGAAGCCGATCTCCTC GGAGGAGGGACAGGGCTCGGAGGAGCAGGTCCCGCCTCCGGAGGCGCTCTCGGTCTCGGG GCGGTCGCAGACGCAGGAGCAGAAGCAAGGTGAAGGAAGACAAATTCAAAGGAAGCCTTT CCGAAGGAATGAAGGCTGAGCAGGAGTCTTCGTCTGATGATAACCTTGAAGACTTTGATG TAGAGGAGGAAGACGAAGAAGCCTTGATAGAACAGAGACGGCTCCAAAGGCAAGCCATTG TTCAGAAATACCAGTACCTTGCCGAGGACAGCAACCTGTCCGTGCCGTCCGAGCCCAGCA GCCCCCAGAGCAGCCCGCGCACCCGGTCCCCTTCCCCAGACGACATCCTGGAGAGGGTCG CCGCCGACGTCAAGGAGTACGAACGGGAAAACGTGGACACGTTCGAGGCTTCCGTCAAAG CCAAGCACAACCTCATGACGGTTGAGCAGAGTAATGGTTCATCTCAGAAGAAGCTCTTGG CACCTGATATGTTTACAGAATCTGATGATATGTTTGCTGCATATTTCGATAGTGCGCGTC TTCGGGCTGCTGGCATTGGAAAAGATTTCAAAGAGAATCCCAATCTCAGGGACAACTGGA CTGATGCCGAAGGCTATTACCGTGTGAACATAGGCGAGGTCCTGGATAAGCGCTACAACG TGTACGGCTACACGGGTCAGGGCGTGTTCAGTAACGTGGTGCGTGCCAGGGACAACGCGA GGGCCAACCAGGAGGTGGCCGTGAAGATCATCCGGAACAACGAGCTCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 114-283, gnl|bosTau2|chr23 (40309324-40309156) | |
| 114-283, gnl|canFam2|chr35 (7297375-7297547) | |
| 114-283, gnl|danRer3|chr2 (25975723-25975919) | |
| 114-283, gnl|dasNov1|scaffold_17648 (19198-19370) | |
| 114-283, gnl|echTel1|scaffold_307624 (38442-38273) | |
| 114-283, gnl|fr1|chrUn (229450742-229450900) | |
| 114-283, gnl|galGal2|chr2 (65714700-65714528) | |
| 114-283, gnl|hg17|chr6 (3985994-3986166) | |
| 114-283, gnl|Hg17|chr6 (3985991-3986160) | |
| 114-283, gnl|loxAfr1|scaffold_10995 (35361-35533) | |
| 114-283, gnl|mm7|chr13 (34303326-34303498) | |
| 114-283, gnl|Mm7|chr13 (34303324-34303492) | |
| 114-283, gnl|monDom2|scaffold_3 (87219656-87219828) | |
| 114-283, gnl|oryCun1|scaffold_91993 (10634-10806) | |
| 114-283, gnl|panTro1|chr5 (4194699-4194871) | |
| 114-283, gnl|rheMac2|chr4 (3904181-3904353) | |
| 114-283, gnl|rn3|chr17 (36338915-36338743) | |
| 114-283, gnl|xenTro1|scaffold_472 (493270-493102) | |
| 363-578, gnl|bosTau2|chr23 (40307476-40307261) | |
| 363-578, gnl|canFam2|chr35 (7300561-7300771) | |
| 363-578, gnl|danRer3|chr2 (25976485-25976698) | |
| 363-578, gnl|dasNov1|scaffold_287006 (1152-942) | |
| 363-578, gnl|echTel1|scaffold_307624 (35371-35161) | |
| 363-578, gnl|fr1|chrUn (229451186-229451388) | |
| 363-578, gnl|galGal2|chr2 (65712383-65712177) | |
| 363-578, gnl|hg17|chr6 (3989025-3989237) | |
| 363-578, gnl|Hg17|chr6 (3989043-3989258) | |
| 363-578, gnl|loxAfr1|scaffold_10995 (40081-40291) | |
| 363-578, gnl|mm7|chr13 (34305690-34305899) | |
| 363-578, gnl|Mm7|chr13 (34305705-34305920) | |
| 363-578, gnl|monDom2|scaffold_3 (87224583-87224793) | |
| 363-578, gnl|oryCun1|scaffold_198792 (42055-41850) | |
| 363-578, gnl|panTro1|chr5 (4197729-4197941) | |
| 363-578, gnl|rheMac2|chr4 (3907510-3907722) | |
| 363-578, gnl|rn3|chr17 (36336621-36336412) | |
| 363-578, gnl|tetNig1|chr6 (5139773-5139584) | |
| 363-578, gnl|xenTro1|scaffold_472 (489220-489021) | |
| 742-888, gnl|bosTau2|chr23 (40304659-40304513) | |
| 742-888, gnl|canFam2|chr35 (7306434-7306628) | |
| 742-888, gnl|danRer3|chr2 (25979670-25979872) | |
| 742-888, gnl|echTel1|scaffold_320409 (40217-40022) | |
| 742-888, gnl|fr1|chrUn (229452168-229452357) | |
| 742-888, gnl|galGal2|chr2 (65707758-65707555) | |
| 742-888, gnl|hg17|chr6 (3994933-3995128) | |
| 742-888, gnl|Hg17|chr6 (3994965-3995111) | |
| 742-888, gnl|loxAfr1|scaffold_10995 (46675-46869) | |
| 742-888, gnl|mm7|chr13 (34309618-34309809) | |
| 742-888, gnl|Mm7|chr13 (34309648-34309794) | |
| 742-888, gnl|monDom2|scaffold_3 (87227854-87228045) | |
| 742-888, gnl|oryCun1|scaffold_198792 (38141-37947) | |
| 742-888, gnl|panTro1|chr5 (4203619-4203814) | |
| 742-888, gnl|rheMac2|chr4 (3913341-3913536) | |
| 742-888, gnl|rn3|chr17 (36331799-36331613) | |
| 742-888, gnl|tetNig1|chr6 (5138817-5138659) | |
| 742-888, gnl|xenTro1|scaffold_472 (487757-487572) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 114-283, gnl|bosTau2|chr23 (40309324-40309156) | |
| 114-283, gnl|canFam2|chr35 (7297375-7297547) | |
| 114-283, gnl|danRer3|chr2 (25975723-25975919) | |
| 114-283, gnl|dasNov1|scaffold_17648 (19198-19370) | |
| 114-283, gnl|echTel1|scaffold_307624 (38442-38273) | |
| 114-283, gnl|fr1|chrUn (229450742-229450900) | |
| 114-283, gnl|galGal2|chr2 (65714700-65714528) | |
| 114-283, gnl|hg17|chr6 (3985994-3986166) | |
| 114-283, gnl|Hg17|chr6 (3985991-3986160) | |
| 114-283, gnl|loxAfr1|scaffold_10995 (35361-35533) | |
| 114-283, gnl|mm7|chr13 (34303326-34303498) | |
| 114-283, gnl|Mm7|chr13 (34303324-34303492) | |
| 114-283, gnl|monDom2|scaffold_3 (87219656-87219828) | |
| 114-283, gnl|oryCun1|scaffold_91993 (10634-10806) | |
| 114-283, gnl|panTro1|chr5 (4194699-4194871) | |
| 114-283, gnl|rheMac2|chr4 (3904181-3904353) | |
| 114-283, gnl|rn3|chr17 (36338915-36338743) | |
| 114-283, gnl|xenTro1|scaffold_472 (493270-493102) | |
| 363-578, gnl|bosTau2|chr23 (40307476-40307261) | |
| 363-578, gnl|canFam2|chr35 (7300561-7300771) | |
| 363-578, gnl|danRer3|chr2 (25976485-25976698) | |
| 363-578, gnl|dasNov1|scaffold_287006 (1152-942) | |
| 363-578, gnl|echTel1|scaffold_307624 (35371-35161) | |
| 363-578, gnl|fr1|chrUn (229451186-229451388) | |
| 363-578, gnl|galGal2|chr2 (65712383-65712177) | |
| 363-578, gnl|hg17|chr6 (3989025-3989237) | |
| 363-578, gnl|Hg17|chr6 (3989043-3989258) | |
| 363-578, gnl|loxAfr1|scaffold_10995 (40081-40291) | |
| 363-578, gnl|mm7|chr13 (34305690-34305899) | |
| 363-578, gnl|Mm7|chr13 (34305705-34305920) | |
| 363-578, gnl|monDom2|scaffold_3 (87224583-87224793) | |
| 363-578, gnl|oryCun1|scaffold_198792 (42055-41850) | |
| 363-578, gnl|panTro1|chr5 (4197729-4197941) | |
| 363-578, gnl|rheMac2|chr4 (3907510-3907722) | |
| 363-578, gnl|rn3|chr17 (36336621-36336412) | |
| 363-578, gnl|tetNig1|chr6 (5139773-5139584) | |
| 363-578, gnl|xenTro1|scaffold_472 (489220-489021) | |
| 742-888, gnl|bosTau2|chr23 (40304659-40304513) | |
| 742-888, gnl|canFam2|chr35 (7306434-7306628) | |
| 742-888, gnl|danRer3|chr2 (25979670-25979872) | |
| 742-888, gnl|echTel1|scaffold_320409 (40217-40022) | |
| 742-888, gnl|fr1|chrUn (229452168-229452357) | |
| 742-888, gnl|galGal2|chr2 (65707758-65707555) | |
| 742-888, gnl|hg17|chr6 (3994933-3995128) | |
| 742-888, gnl|Hg17|chr6 (3994965-3995111) | |
| 742-888, gnl|loxAfr1|scaffold_10995 (46675-46869) | |
| 742-888, gnl|mm7|chr13 (34309618-34309809) | |
| 742-888, gnl|Mm7|chr13 (34309648-34309794) | |
| 742-888, gnl|monDom2|scaffold_3 (87227854-87228045) | |
| 742-888, gnl|oryCun1|scaffold_198792 (38141-37947) | |
| 742-888, gnl|panTro1|chr5 (4203619-4203814) | |
| 742-888, gnl|rheMac2|chr4 (3913341-3913536) | |
| 742-888, gnl|rn3|chr17 (36331799-36331613) | |
| 742-888, gnl|tetNig1|chr6 (5138817-5138659) | |
| 742-888, gnl|xenTro1|scaffold_472 (487757-487572) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| nmm (0.132802) | |
| cty (0.10408) |