Ss1.1-Pig4-TMW8031E05.3
|
CTGAGAAGGTAGTGGTGGCGGCGGCGGCCACGGCGGCTTTGGAGGCCGCGCTCCCGGTCC
TGGCTTCGGCCCCAGCCCCACCATGGTGACGCTCGCTGAGCTGCTGGTGCTCTTGGCCGC
CCTCCTGGCCACGGCCTCGGGCTACTTCGTCAGCATCGACGCACATGCCGAGGAGTGCTT
CTTCGAGCGGGTCACCTCGGGCACCAAGATGGGCCTCATCTTCGAGGTGGCCGAGGGCGG
CTTCCTGGACATCGACGTGGAGATTACAGGGCCTGATAATAAAGGAATTTATAAAGGAGA
CCGGGAGTCCAGTGGGAAATACACATTTGCTGCTCACATGGATGGAACATATAAGTTTTG
TTTTAGCAATAGGATGTCCACCATGACTCCAAAGATAGTGATGTTCACCATTGATATTGG
GGAGGCCCCAAAAGGACAAGACATGGAAACAGAAGCTCATCAGAACAAGCTAGAAGAAAT
GATTAATGAGCTTGCAGTGGCAATGACAGCTGTAAAACATGAACAGGAATACATGGAAGT
TCGGGAGAGAATACACAGAGCAATCAATGACAACACAAACAGCAGAGTGGTCCTTTGGTC
CTTCTTTGAAGCTCTTGTTCTAGTTGCCATGACATTGGGACAGATCTACTACCTGAAGAG
ATTTTTTGAAGTCCGGAGGGTTGTTTAAAAGGCCTTTTCCTAATGATCCCAAGCGCATAA
TTTCACTGTTTACCAAACGTCTTGGTCATAATAATGCATCAGTTTCTACATTTTTATTTT
TTGAACTGTACATTCACAGCTTATGTTTCTTTGTGATTAATAGATTTGGGGGAAACACCT
TTTTAGGAAAGTTATAGTGAGAAATTTATGTTTGATTGGCATAGTTTCATATTTGAATTC
TGCCTCCATTACACAGATCCTTCCAGAACTCAAACACTGTAAGTGGAATATAGGTGTATA
GTCCTTATATCTTCTCCTTTTGTTTTCATAATAAAATGCAGTTTGTTCAGGATAGTACTT
TATTGATAGTACTTTACTAAAATGACTGCATTCTTGTGATCCCTTATCCTGCAGTTCAAG
TCATTAAAGATTCAGTTTGTTGAGTCCCTATGAGAAACAACTGTCTGAATCTTGACGTTT
TCTCTCCAGCCTGAAGGTTGGTACTTTTATCCTTTGTCTATCTTGTTTTTGCTTTAAAGA
TAAGACTTATTAATCCAACAACATTTTTCCTCCTAAAGTTTTACTTTGAACCTTGCTTTG
AATTCAGTCACCTCCACTTAAAATTATTGACACAAACAGCTAATCACCATTTTTTGGTTT
CTGCCTAACCTTTTAAGAAGGCTCTATTAGAGCCATTTCTCTGGGTGTTTCAGCGAATGG
TAACACTTATTCTTTCTCTGCTGGCACATCCCCTTTCTCCACTTTTGGCATGTTGGAGGT
ATGCATTCACTTAATTGGAAAAATCTGGGTTTCTGATGCCAAAGGATTAAGCCTCTTGAA
TTTCTTTGCAGTGATATACAGCCACTATTTTATTTTTATCAGTGGCATTTTGGCCACTGT
TTAATTAGGGTACTGAGCAGCATTGTCAGTACTAGGGTTTTTGTTTTCCTTGGGTCTTTC
TTTTTTGGCACATGTGAATTTTGTTTTGTATAAAACGAAATGACTTTCTCTTGGTCGCTG
ATGATGGGTGTAAAATTAAAAGAGCATCTGGTTTTGGCGTGGGGATGATCCAGGATTATG
TTGTGACTAATGTATATTAGTCACTTGTACAATTTTTTTGGATCTTTGCAAGGGGACAAC
TTCAAGTAACGAGTTTTATATAATTAATTTAAATTTGTTAAAGGTTTTCATGTTCAGGAT
AAACAATTTTTCAACCTTGGGTGAAAATACTTGCAACAGTTTAAGGTAACCATTTTACCT
TAGGACAACTGTTGCATGCCAATTTCTGTGTGTCTGTGTGAAAACACTTCAAAATTGAGT
TAAAAGATGTAAATTTAAAATTGGTTGTGTATCTAATCTTCCCCAGGTTCAGTAAATAAA
CAATTCTTTTTAAAAACAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTGAGAAGGTAGTGGTGGCGGCGGCGGCCACGGCGGCTTTGGAGGCCGCGCTCCCGGTCC
TGGCTTCGGCCCCAGCCCCACCATGGTGACGCTCGCTGAGCTGCTGGTGCTCTTGGCCGC
CCTCCTGGCCACGGCCTCGGGCTACTTCGTCAGCATCGACGCACATGCCGAGGAGTGCTT
CTTCGAGCGGGTCACCTCGGGCACCAAGATGGGCCTCATCTTCGAGGTGGCCGAGGGCGG
CTTCCTGGACATCGACGTGGAGATTACAGGGCCTGATAATAAAGGAATTTATAAAGGAGA
CCGGGAGTCCAGTGGGAAATACACATTTGCTGCTCACATGGATGGAACATATAAGTTTTG
TTTTAGCAATAGGATGTCCACCATGACTCCAAAGATAGTGATGTTCACCATTGATATTGG
GGAGGCCCCAAAAGGACAAGACATGGAAACAGAAGCTCATCAGAACAAGCTAGAAGAAAT
GATTAATGAGCTTGCAGTGGCAATGACAGCTGTAAAACATGAACAGGAATACATGGAAGT
TCGGGAGAGAATACACAGAGCAATCAATGACAACACAAACAGCAGAGTGGTCCTTTGGTC
CTTCTTTGAAGCTCTTGTTCTAGTTGCCATGACATTGGGACAGATCTACTACCTGAAGAG
ATTTTTTGAAGTCCGGAGGGTTGTTTAAAAGGCCTTTTCCTAATGATCCCAAGCGCATAA
TTTCACTGTTTACCAAACGTCTTGGTCATAATAATGCATCAGTTTCTACATTTTTATTTT
TTGAACTGTACATTCACAGCTTATGTTTCTTTGTGATTAATAGATTTGGGGGAAACACCT
TTTTAGGAAAGTTATAGTGAGAAATTTATGTTTGATTGGCATAGTTTCATATTTGAATTC
TGCCTCCATTACACAGATCCTTCCAGAACTCAAACACTGTAAGTGGAATATAGGTGTATA
GTCCTTATATCTTCTCCTTTTGTTTTCATAATAAAATGCAGTTTGTTCAGGATAGTACTT
TATTGATAGTACTTTACTAAAATGACTGCATTCTTGTGATCCCTTATCCTGCAGTTCAAG
TCATTAAAGATTCAGTTTGTTGAGTCCCTATGAGAAACAACTGTCTGAATCTTGACGTTT
TCTCTCCAGCCTGAAGGTTGGTACTTTTATCCTTTGTCTATCTTGTTTTTGCTTTAAAGA
TAAGACTTATTAATCCAACAACATTTTTCCTCCTAAAGTTTTACTTTGAACCTTGCTTTG
AATTCAGTCACCTCCACTTAAAATTATTGACACAAACAGCTAATCACCATTTTTTGGTTT
CTGCCTAACCTTTTAAGAAGGCTCTATTAGAGCCATTTCTCTGGGTGTTTCAGCGAATGG
TAACACTTATTCTTTCTCTGCTGGCACATCCCCTTTCTCCACTTTTGGCATGTTGGAGGT
ATGCATTCACTTAATTGGAAAAATCTGGGTTTCTGATGCCAAAGGATTAAGCCTCTTGAA
TTTCTTTGCAGTGATATACAGCCACTATTTTATTTTTATCAGTGGCATTTTGGCCACTGT
TTAATTAGGGTACTGAGCAGCATTGTCAGTACTAGGGTTTTTGTTTTCCTTGGGTCTTTC
TTTTTTGGCACATGTGAATTTTGTTTTGTATAAAACGAAATGACTTTCTCTTGGTCGCTG
ATGATGGGTGTAAAATTAAAAGAGCATCTGGTTTTGGCGTGGGGATGATCCAGGATTATG
TTGTGACTAATGTATATTAGTCACTTGTACAATTTTTTTGGATCTTTGCAAGGGGACAAC
TTCAAGTAACGAGTTTTATATAATTAATTTAAATTTGTTAAAGGTTTTCATGTTCAGGAT
AAACAATTTTTCAACCTTGGGTGAAAATACTTGCAACAGTTTAAGGTAACCATTTTACCT
TAGGACAACTGTTGCATGCCAATTTCTGTGTGTCTGTGTGAAAACACTTCAAAATTGAGT
TAAAAGATGTAAATTTAAAATTGGTTGTGTATCTAATCTTCCCCAGGTTCAGTAAATAAA
CAATTCTTTTTAAAAACAAAAAAAAAAAAAAAAAAA
|
|
gi|26354785|dbj|BAC41019.1| |
Protein identifier
|
gi|26354785|dbj|BAC41019.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-262, gnl|bosTau2|chr17 (26560225-26560486) |
|
1-262, gnl|Hg17|chr12 (122593977-122594243) |
|
1-262, gnl|Mm7|chr5 (123786655-123786904) |
| |
|
561-1158, gnl|bosTau2|chr17 (26568093-26568655) |
|
561-1158, gnl|Hg17|chr12 (122606029-122606641) |
|
561-1158, gnl|Mm7|chr5 (123794941-123795522) |
| |
|
1525-2076, gnl|bosTau2|chr28 (13650235-13649708) |
|
1525-2076, gnl|Hg17|chr12 (122607027-122607559) |
|
1525-2076, gnl|Mm7|chr9 (33623663-33624194) |
| |
|
1655-2067, gnl|bosTau2|chr15 (51450515-51450095) |
|
1655-2067, gnl|Hg17|chr12 (122607159-122607566) |
|
1655-2067, gnl|Mm7|chr15 (78905627-78906049) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-262, gnl|bosTau2|chr17 (26560225-26560486) |
|
1-262, gnl|Hg17|chr12 (122593977-122594243) |
|
1-262, gnl|Mm7|chr5 (123786655-123786904) |
| |
|
561-1158, gnl|bosTau2|chr17 (26568093-26568655) |
|
561-1158, gnl|Hg17|chr12 (122606029-122606641) |
|
561-1158, gnl|Mm7|chr5 (123794941-123795522) |
| |
|
1525-2076, gnl|bosTau2|chr28 (13650235-13649708) |
|
1525-2076, gnl|Hg17|chr12 (122607027-122607559) |
|
1525-2076, gnl|Mm7|chr9 (33623663-33624194) |
| |
|
1655-2067, gnl|bosTau2|chr15 (51450515-51450095) |
|
1655-2067, gnl|Hg17|chr12 (122607159-122607566) |
|
1655-2067, gnl|Mm7|chr15 (78905627-78906049) |
|
cbl (1.26277) |
|
cty (1.24896) |
|
ova (1.03306) |
|
vin (0.997672) |
|
fat (0.884564) |
|
tra (0.861645) |
|
nms (0.855432) |
|
mga (0.801025) |
|
liv (0.731422) |
|
lin (0.728014) |
|
pty (0.713572) |
|
mgp (0.692042) |
|
sug (0.636456) |
|
lun (0.601956) |
|
aor (0.585823) |
|
sag (0.548145) |
|
mgm (0.541028) |
|
kid (0.518941) |
|
pgl (0.473934) |
|
fco (0.471624) |
|
ski (0.440205) |
|
spl (0.429553) |
|
nca (0.410621) |
|
hea (0.408998) |
|
lyg (0.399308) |
|
nmm (0.398406) |
|
col (0.390016) |
|
ret (0.3862) |
|
ese (0.379507) |
|
bla (0.373042) |
|
fty (0.351679) |
|
duo (0.345602) |
|
ecc (0.345105) |
|
tbr (0.308356) |
|
isp (0.300752) |
|
bfe (0.299715) |
|
fce (0.271592) |
|
pla (0.267344) |
|
ebs (0.236602) |
|
ece (0.229305) |
|
jca (0.22792) |
|
mas (0.210305) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
ldo (0.194005) |
|
nep (0.183925) |
|
gul (0.177588) |
|
ill (0.175593) |
|
sin (0.174948) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
nje (0.16592) |
|
cki (0.165235) |
|
nco (0.161734) |
|
ctl (0.153069) |
|
eli (0.151814) |
|
cst (0.140036) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
ute (0.132784) |
|
cbl (1.26277) |
|
cty (1.24896) |
|
ova (1.03306) |
|
vin (0.997672) |
|
fat (0.884564) |
|
tra (0.861645) |
|
nms (0.855432) |
|
mga (0.801025) |
|
liv (0.731422) |
|
lin (0.728014) |
|
pty (0.713572) |
|
mgp (0.692042) |
|
sug (0.636456) |
|
lun (0.601956) |
|
aor (0.585823) |
|
sag (0.548145) |
|
mgm (0.541028) |
|
kid (0.518941) |
|
pgl (0.473934) |
|
fco (0.471624) |
|
ski (0.440205) |
|
spl (0.429553) |
|
nca (0.410621) |
|
hea (0.408998) |
|
lyg (0.399308) |
|
nmm (0.398406) |
|
col (0.390016) |
|
ret (0.3862) |
|
ese (0.379507) |
|
bla (0.373042) |
|
fty (0.351679) |
|
duo (0.345602) |
|
ecc (0.345105) |
|
tbr (0.308356) |
|
isp (0.300752) |
|
bfe (0.299715) |
|
fce (0.271592) |
|
pla (0.267344) |
|
ebs (0.236602) |
|
ece (0.229305) |
|
jca (0.22792) |
|
mas (0.210305) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
ldo (0.194005) |
|
nep (0.183925) |
|
gul (0.177588) |
|
ill (0.175593) |
|
sin (0.174948) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
nje (0.16592) |
|
cki (0.165235) |
|
nco (0.161734) |
|
ctl (0.153069) |
|
eli (0.151814) |
|
cst (0.140036) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
ute (0.132784) |
