Non-Coding RNA Search

Ss1.1-Pig4-TMW8031E14.3

Sequence:


               
               TGGGGTACTCATGCTGAATGGGGGCTGGCAGGGCTGGGTTGAAGTTCTCCGGACTGTATT
TGTGGCCCCAGCCAATGTAGATGTTCTCAAACTTCTTGCCACTGGCATAGGCATAGGCCC
CAGGCCAGAGATTGGAGCGCACCACGGCCACGGAATACTGTGGGCTGAGGCTGCAGGACA
GGCGGGCGGTGCAGGGTGACATGTGCATGATTTCTGCATCTTCTGAGAGCGGCGTCAGCA
GCGGGGGCCCGACCTCCTGCTCCACCTCCTCTCTCCCCTCATCGGCCTTCTCTTCCTCCT
CTCCCAGCTCCTCTGATACCGTTATTTCCGAGTCGCCCTGGCTCGGTCCGGTCCTCACCT
GCGGCAGGATGTGCTGGGTGTGGTGCACCCAGTTGGCCATGGAGTCCACAAGCTCGAGAA
CCGGGATGCCCTCAAAGTCCGGGTTCTCCTCGTAGGAGTCGCGCCCGGCACCGCCCTCCT
CCTCCTCGTCGCCCTCCTCCTCGCCAAACTGGTAGAAGCCGAGGGGACTGATGTGTGTGG
CGGCGGAGATGCGGGCGATCTGGGCCCGCAGGTAGTTGGCCTCGTTGCCCGGGAAGGGCG
GGTAGCTGACGACGGGCGCATCCAGGCGGCCAGTGAAGAACTTCCTGATCTTGCGGGCCT
GCACGATCTGAATGGGCGTCACGTGGGGCAGCCGCACCCACGGCCGGCCCGGCTCGTTGC
ACACGAAATACAGGTACTTGTTGGCGCCCGAGCGGCTCTCCTCCTTGGGGATGACGGGTG
GCGGCTTCCACGTGGACTTGGGGATAAGGTCCGAGACCTTCTCCTCATCCTCCTCGCCCT
CCTCCTCCGCGTGCGCCTCCAGGACCTCGCCGCCCTCCATCAGCTCCTCCACTTCCTCCT
CTTCGCCCTCCTCCTCGCCCTCCCGGAACTCCACCTCGGCCACCAGGTAGCTGCGACTGA
GCCCCAGGATCTTGCCCCAGAAGCGGCAGCTATGGATGGGCTGCTGCTCCACCAGCTGCT
TCAGGGCCATGAAGATGCGGAAACTCTCGTCGGAGCTCAGGCCCACGCCCGCCTGTTCGA
AGTAGAAGGCCTTCTCCATGATGTTGGGCACCGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGTACTCATGCTGAATGGGGGCTGGCAGGGCTGGGTTGAAGTTCTCCGGACTGTATT
TGTGGCCCCAGCCAATGTAGATGTTCTCAAACTTCTTGCCACTGGCATAGGCATAGGCCC
CAGGCCAGAGATTGGAGCGCACCACGGCCACGGAATACTGTGGGCTGAGGCTGCAGGACA
GGCGGGCGGTGCAGGGTGACATGTGCATGATTTCTGCATCTTCTGAGAGCGGCGTCAGCA
GCGGGGGCCCGACCTCCTGCTCCACCTCCTCTCTCCCCTCATCGGCCTTCTCTTCCTCCT
CTCCCAGCTCCTCTGATACCGTTATTTCCGAGTCGCCCTGGCTCGGTCCGGTCCTCACCT
GCGGCAGGATGTGCTGGGTGTGGTGCACCCAGTTGGCCATGGAGTCCACAAGCTCGAGAA
CCGGGATGCCCTCAAAGTCCGGGTTCTCCTCGTAGGAGTCGCGCCCGGCACCGCCCTCCT
CCTCCTCGTCGCCCTCCTCCTCGCCAAACTGGTAGAAGCCGAGGGGACTGATGTGTGTGG
CGGCGGAGATGCGGGCGATCTGGGCCCGCAGGTAGTTGGCCTCGTTGCCCGGGAAGGGCG
GGTAGCTGACGACGGGCGCATCCAGGCGGCCAGTGAAGAACTTCCTGATCTTGCGGGCCT
GCACGATCTGAATGGGCGTCACGTGGGGCAGCCGCACCCACGGCCGGCCCGGCTCGTTGC
ACACGAAATACAGGTACTTGTTGGCGCCCGAGCGGCTCTCCTCCTTGGGGATGACGGGTG
GCGGCTTCCACGTGGACTTGGGGATAAGGTCCGAGACCTTCTCCTCATCCTCCTCGCCCT
CCTCCTCCGCGTGCGCCTCCAGGACCTCGCCGCCCTCCATCAGCTCCTCCACTTCCTCCT
CTTCGCCCTCCTCCTCGCCCTCCCGGAACTCCACCTCGGCCACCAGGTAGCTGCGACTGA
GCCCCAGGATCTTGCCCCAGAAGCGGCAGCTATGGATGGGCTGCTGCTCCACCAGCTGCT
TCAGGGCCATGAAGATGCGGAAACTCTCGTCGGAGCTCAGGCCCACGCCCGCCTGTTCGA
AGTAGAAGGCCTTCTCCATGATGTTGGGCACCGCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61875284|ref|XP_581564.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61875284|ref|XP_581564.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               777-896, - strand, RNAz p=0.886507

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               777-896, - strand, RNAz p=0.886507

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               92-216, gnl|bosTau2|chr18 (38170142-38170018)
               

               
               92-216, gnl|canFam2|chr1 (112701048-112700884)
               

               
               92-216, gnl|danRer3|chr5 (68491298-68491130)
               

               
               92-216, gnl|dasNov1|scaffold_196127 (3735-3575)
               

               
               92-216, gnl|echTel1|scaffold_91722 (114-278)
               

               
               92-216, gnl|fr1|chrUn (291812875-291812742)
               

               
               92-216, gnl|hg17|chr19 (50995539-50995711)
               

               
               92-216, gnl|Hg17|chr19 (50995540-50995664)
               

               
               92-216, gnl|loxAfr1|scaffold_70346 (8205-8040)
               

               
               92-216, gnl|mm7|chr7 (16750532-16750359)
               

               
               92-216, gnl|Mm7|chr7 (16750529-16750405)
               

               
               92-216, gnl|monDom2|scaffold_0 (100897388-100897527)
               

               
               92-216, gnl|oryCun1|scaffold_16912 (581-741)
               

               
               92-216, gnl|panTro1|chr20 (48295177-48295349)
               

               
               92-216, gnl|rheMac2|chr4 (147306535-147306661)
               

               
               92-216, gnl|rn3|chr1 (78500669-78500506)
               

               
               92-216, gnl|tetNig1|chrUn_random (49780563-49780438)
               


               
               340-1116, gnl|bosTau2|chr18 (38167681-38166904)
               

               
               340-1116, gnl|Hg17|chr19 (50999329-51000107)
               

               
               340-1116, gnl|Mm7|chr7 (16748458-16747688)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-216, gnl|bosTau2|chr18 (38170142-38170018)
               

               
               92-216, gnl|canFam2|chr1 (112701048-112700884)
               

               
               92-216, gnl|danRer3|chr5 (68491298-68491130)
               

               
               92-216, gnl|dasNov1|scaffold_196127 (3735-3575)
               

               
               92-216, gnl|echTel1|scaffold_91722 (114-278)
               

               
               92-216, gnl|fr1|chrUn (291812875-291812742)
               

               
               92-216, gnl|hg17|chr19 (50995539-50995711)
               

               
               92-216, gnl|Hg17|chr19 (50995540-50995664)
               

               
               92-216, gnl|loxAfr1|scaffold_70346 (8205-8040)
               

               
               92-216, gnl|mm7|chr7 (16750532-16750359)
               

               
               92-216, gnl|Mm7|chr7 (16750529-16750405)
               

               
               92-216, gnl|monDom2|scaffold_0 (100897388-100897527)
               

               
               92-216, gnl|oryCun1|scaffold_16912 (581-741)
               

               
               92-216, gnl|panTro1|chr20 (48295177-48295349)
               

               
               92-216, gnl|rheMac2|chr4 (147306535-147306661)
               

               
               92-216, gnl|rn3|chr1 (78500669-78500506)
               

               
               92-216, gnl|tetNig1|chrUn_random (49780563-49780438)
               


               
               340-1116, gnl|bosTau2|chr18 (38167681-38166904)
               

               
               340-1116, gnl|Hg17|chr19 (50999329-51000107)
               

               
               340-1116, gnl|Mm7|chr7 (16748458-16747688)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (0.132784)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)

	92-216, gnl\|bosTau2\|chr18 (38170142-38170018)
	92-216, gnl\|canFam2\|chr1 (112701048-112700884)
	92-216, gnl\|danRer3\|chr5 (68491298-68491130)
	92-216, gnl\|dasNov1\|scaffold_196127 (3735-3575)
	92-216, gnl\|echTel1\|scaffold_91722 (114-278)
	92-216, gnl\|fr1\|chrUn (291812875-291812742)
	92-216, gnl\|hg17\|chr19 (50995539-50995711)
	92-216, gnl\|Hg17\|chr19 (50995540-50995664)
	92-216, gnl\|loxAfr1\|scaffold_70346 (8205-8040)
	92-216, gnl\|mm7\|chr7 (16750532-16750359)
	92-216, gnl\|Mm7\|chr7 (16750529-16750405)
	92-216, gnl\|monDom2\|scaffold_0 (100897388-100897527)
	92-216, gnl\|oryCun1\|scaffold_16912 (581-741)
	92-216, gnl\|panTro1\|chr20 (48295177-48295349)
	92-216, gnl\|rheMac2\|chr4 (147306535-147306661)
	92-216, gnl\|rn3\|chr1 (78500669-78500506)
	92-216, gnl\|tetNig1\|chrUn_random (49780563-49780438)

	340-1116, gnl\|bosTau2\|chr18 (38167681-38166904)
	340-1116, gnl\|Hg17\|chr19 (50999329-51000107)
	340-1116, gnl\|Mm7\|chr7 (16748458-16747688)