Non-Coding RNA Search

Ss1.1-Pig4-TMW8031E16.3

Sequence:


               
               CCAGCTGTCAAAGATCCATTGGTTAAGAAACCAGAAACTAAACTCAAACAAGAGACAGCT
TTTCTAGCATTTAAGAGAGCAGAAGTCAAGACATCCACGCTTCTTTCAGGAAATTCTTCT
GGTACCAATGTTTCCTCTTCAGCAACTAGTGGACTAATTGGATGGGCAGCTTTTGCAGCT
AAAACAACTTCTGGTGGTCCATCAACAGCAAAATTGAATTCAACAACCCAAAACAATAGT
GGAAAACCTGCTACCTCATCAGCTAACCAGAAGCCTGTGGGTTTGACTGGTCTGGCAACA
TCATCCAAAGGTGGAATAGGTTCCAAAATAGGTTCCAGTAACAGCACTTCCCCCACTGTA
CCATTGAAACCACCGCCACCTCTAACTTTGGGCAAAACGGGCCTTAGTCGCTCAGTTAGT
TGTGACAATGTTAGCAAAGTAGGTCTTCCCAGTCCAAGTAGTTTGGTTCCCGGAAGCAGC
AGCCAACTAAGTGGGAATGGAAATAGTGGGACATCAGGGCCTAGTGGAAGCACCACTAAC
AAAACCACTTCAGAATCAAGCAGCTCTCCCTTAGCATCCCTTAAAGGTCCAACTTCCCAA
GAATCACAGCTCAATGCCATGAAGCGATTACAGATGGTCAAGAAGAAGGCTGCCCAAAAG
AAACTAAAGAAGTAATGTGGCCAAGTAGGTTTTTATATCACATTACCCTGAAGATTAAAA
TCTTATTAAGACAGTAACTGTAATATACTATAATTTAATAAAAATATTCATAATGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCTGTCAAAGATCCATTGGTTAAGAAACCAGAAACTAAACTCAAACAAGAGACAGCT
TTTCTAGCATTTAAGAGAGCAGAAGTCAAGACATCCACGCTTCTTTCAGGAAATTCTTCT
GGTACCAATGTTTCCTCTTCAGCAACTAGTGGACTAATTGGATGGGCAGCTTTTGCAGCT
AAAACAACTTCTGGTGGTCCATCAACAGCAAAATTGAATTCAACAACCCAAAACAATAGT
GGAAAACCTGCTACCTCATCAGCTAACCAGAAGCCTGTGGGTTTGACTGGTCTGGCAACA
TCATCCAAAGGTGGAATAGGTTCCAAAATAGGTTCCAGTAACAGCACTTCCCCCACTGTA
CCATTGAAACCACCGCCACCTCTAACTTTGGGCAAAACGGGCCTTAGTCGCTCAGTTAGT
TGTGACAATGTTAGCAAAGTAGGTCTTCCCAGTCCAAGTAGTTTGGTTCCCGGAAGCAGC
AGCCAACTAAGTGGGAATGGAAATAGTGGGACATCAGGGCCTAGTGGAAGCACCACTAAC
AAAACCACTTCAGAATCAAGCAGCTCTCCCTTAGCATCCCTTAAAGGTCCAACTTCCCAA
GAATCACAGCTCAATGCCATGAAGCGATTACAGATGGTCAAGAAGAAGGCTGCCCAAAAG
AAACTAAAGAAGTAATGTGGCCAAGTAGGTTTTTATATCACATTACCCTGAAGATTAAAA
TCTTATTAAGACAGTAACTGTAATATACTATAATTTAATAAAAATATTCATAATGAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q921U2_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q921U2_MOUSE

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               198-357, - strand, RNAz p=0.751709

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-357, - strand, RNAz p=0.751709

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               320-420, - strand, RNAmicro p=0.999996

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               320-420, - strand, RNAmicro p=0.999996

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               89-778, gnl|bosTau2|chr29 (40158828-40158139)
               

               
               89-778, gnl|Hg17|chr4 (106962080-106961388)
               

               
               89-778, gnl|Mm7|chr3 (132905752-132906475)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-778, gnl|bosTau2|chr29 (40158828-40158139)
               

               
               89-778, gnl|Hg17|chr4 (106962080-106961388)
               

               
               89-778, gnl|Mm7|chr3 (132905752-132906475)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ova (0.129132)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)
               

               
               nbm (0.0993246)

	89-778, gnl\|bosTau2\|chr29 (40158828-40158139)
	89-778, gnl\|Hg17\|chr4 (106962080-106961388)
	89-778, gnl\|Mm7\|chr3 (132905752-132906475)