Non-Coding RNA Search

Ss1.1-Pig4-TMW8031F02.5

Sequence:


               
               GTAGGATATCCACCATAACTTATTAAATATACTGGCCCTTTTATCGTACAGCAGAGACCA
CCCCAGTTCTCTTTGTTTTGTTTTACTGGGTTTCTTTTGTCTTTGTAGATATCAGACACC
TTGTGTATAAGAAATGATTTATGCCAAGTGGAGGTGACTTTTTAGGAGCCAGTTAGAGGC
AATTTTGAAACCCATGCCGAAATCCCTCTTCTTACAGTTGGTGTGGAAGTCACAAGTCTG
TTAATTGGACTGTTTCCTCTACCTATTGTTCCTGCTTTCTCTATTTCTGTCTGGACAGTC
AGGAAAAGATTTAATGTTTAATATTTAAACAAAATATTTAATACCTACACAGTAAAATTA
TTCGAACTTCAAACCAGTATTGAAACCAGTTGGAAACCAGCTAATAGTTTCTTAATCTCA
GATTTAGAGATGAATGTAAACTGTATTCTGTTGAAATGTGCAAGTGTTTGATTCATGCCG
TTTAAAAAACTCCTGCCTTTAGGTCATTGTTTAATGGGACCAACTCGTAAAGTTTGTAGC
CTTAAAGAAATCTCTATGCTAAAAAAGTTTGTTCTGGTTCAGCTAAGAAACATGAAATAA
CTGCCTGGAATTTGGAGTTAGCCCCAGTGTTCTGGAGAAGGGGAGGTGACAGTTTTCCAA
AGAAGGACCCATACACACTGATATTGTCTTCTATAGGGATTGTTGGACAGGCCTCAGATC
AAGGTCTGTACAATGAACAGGAGGAAAGAAGAGCTTTGAAACAAGGCTCTTGATACCACT
GGTGAATATAGGTGAGAACTAGTAAGATTCTGTTAACATCCAAGTGGAAGTTGTTTCAGG
AGTCATATTGTATGACTTGATCATTATTTCTGCAGGAAAAATGGATGTTCAGTGCTCTTT
TTTAAACTTTATCTTGCATATGTTTGTATAAAAATCGTCTTCTTCATCCTTGTGGTGCTT
ATTCATCTGAGCCGTTTCCATAGTCCTCATGCCTCTGCTTTGTTTTTCCTTTGTAAAGTA
AGGCTTTTGCTTTTGCCTTAAAGTTTCCCTAGGGAATTCTTTTCATTTTGTACAGCTTTT
GCAGCATGGATCAAACATTGGCTTACTTACGCTAATGTGTGAAGAGAAAATTATCTGAAC
AGGTGAGCTTTAATGAACAAATGTATATTTTCTCTGAGTTTGAGTAGGGCGTGTGTGGTT
GCATTATTTTTTTTTTTAATTAATATGAAGAAAGTAAGTCCAGTTCTCACAAATACTAAT
CAAATAAAAATTGCTACTCATTCTTGAAAAGGTGCAAATGTAAAATTTTTAAAAAATATC
TATGGTGGGAGCTAGAACCATGCAAAGAATGTTTACCAACAGGTTCATTAATTATTTTGG
ATCTGGAACTTGGTTTTGTTTTTTAATAGTAATAAGAATGGTAGAGTACTAGGAAGGTTC
TGGAAGATGCTGTCAATTTTACTTTAAAATGAGAATCTGGTGTTTCTGTATTTTATTGTT
TTCAATAAAACTTAAGTGTTTTGGAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGGATATCCACCATAACTTATTAAATATACTGGCCCTTTTATCGTACAGCAGAGACCA
CCCCAGTTCTCTTTGTTTTGTTTTACTGGGTTTCTTTTGTCTTTGTAGATATCAGACACC
TTGTGTATAAGAAATGATTTATGCCAAGTGGAGGTGACTTTTTAGGAGCCAGTTAGAGGC
AATTTTGAAACCCATGCCGAAATCCCTCTTCTTACAGTTGGTGTGGAAGTCACAAGTCTG
TTAATTGGACTGTTTCCTCTACCTATTGTTCCTGCTTTCTCTATTTCTGTCTGGACAGTC
AGGAAAAGATTTAATGTTTAATATTTAAACAAAATATTTAATACCTACACAGTAAAATTA
TTCGAACTTCAAACCAGTATTGAAACCAGTTGGAAACCAGCTAATAGTTTCTTAATCTCA
GATTTAGAGATGAATGTAAACTGTATTCTGTTGAAATGTGCAAGTGTTTGATTCATGCCG
TTTAAAAAACTCCTGCCTTTAGGTCATTGTTTAATGGGACCAACTCGTAAAGTTTGTAGC
CTTAAAGAAATCTCTATGCTAAAAAAGTTTGTTCTGGTTCAGCTAAGAAACATGAAATAA
CTGCCTGGAATTTGGAGTTAGCCCCAGTGTTCTGGAGAAGGGGAGGTGACAGTTTTCCAA
AGAAGGACCCATACACACTGATATTGTCTTCTATAGGGATTGTTGGACAGGCCTCAGATC
AAGGTCTGTACAATGAACAGGAGGAAAGAAGAGCTTTGAAACAAGGCTCTTGATACCACT
GGTGAATATAGGTGAGAACTAGTAAGATTCTGTTAACATCCAAGTGGAAGTTGTTTCAGG
AGTCATATTGTATGACTTGATCATTATTTCTGCAGGAAAAATGGATGTTCAGTGCTCTTT
TTTAAACTTTATCTTGCATATGTTTGTATAAAAATCGTCTTCTTCATCCTTGTGGTGCTT
ATTCATCTGAGCCGTTTCCATAGTCCTCATGCCTCTGCTTTGTTTTTCCTTTGTAAAGTA
AGGCTTTTGCTTTTGCCTTAAAGTTTCCCTAGGGAATTCTTTTCATTTTGTACAGCTTTT
GCAGCATGGATCAAACATTGGCTTACTTACGCTAATGTGTGAAGAGAAAATTATCTGAAC
AGGTGAGCTTTAATGAACAAATGTATATTTTCTCTGAGTTTGAGTAGGGCGTGTGTGGTT
GCATTATTTTTTTTTTTAATTAATATGAAGAAAGTAAGTCCAGTTCTCACAAATACTAAT
CAAATAAAAATTGCTACTCATTCTTGAAAAGGTGCAAATGTAAAATTTTTAAAAAATATC
TATGGTGGGAGCTAGAACCATGCAAAGAATGTTTACCAACAGGTTCATTAATTATTTTGG
ATCTGGAACTTGGTTTTGTTTTTTAATAGTAATAAGAATGGTAGAGTACTAGGAAGGTTC
TGGAAGATGCTGTCAATTTTACTTTAAAATGAGAATCTGGTGTTTCTGTATTTTATTGTT
TTCAATAAAACTTAAGTGTTTTGGAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               742-856, - strand, RNAz p=0.784831
               

               
               1012-1155, + strand, RNAz p=0.948951

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               742-856, - strand, RNAz p=0.784831
               

               
               1012-1155, + strand, RNAz p=0.948951

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_173510, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_173510, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1525, gnl|bosTau2|chr17 (41350445-41351952)
               

               
               3-1525, gnl|Hg17|chr22 (27508290-27509837)
               

               
               3-1525, gnl|Mm7|chr11 (5482277-5480898)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1525, gnl|bosTau2|chr17 (41350445-41351952)
               

               
               3-1525, gnl|Hg17|chr22 (27508290-27509837)
               

               
               3-1525, gnl|Mm7|chr11 (5482277-5480898)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               kid (0.908147)
               

               
               mgm (0.541028)
               

               
               cbr (0.511902)
               

               
               liv (0.438853)
               

               
               isp (0.300752)
               

               
               clu (0.239292)
               

               
               cbl (0.229595)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               eru (0.120048)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.908147)
               

               
               mgm (0.541028)
               

               
               cbr (0.511902)
               

               
               liv (0.438853)
               

               
               isp (0.300752)
               

               
               clu (0.239292)
               

               
               cbl (0.229595)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               eru (0.120048)

	742-856, - strand, RNAz p=0.784831
	1012-1155, + strand, RNAz p=0.948951

	3-1525, gnl\|bosTau2\|chr17 (41350445-41351952)
	3-1525, gnl\|Hg17\|chr22 (27508290-27509837)
	3-1525, gnl\|Mm7\|chr11 (5482277-5480898)

	kid (0.908147)
	mgm (0.541028)
	cbr (0.511902)
	liv (0.438853)
	isp (0.300752)
	clu (0.239292)
	cbl (0.229595)
	nms (0.213858)
	fcc (0.197785)
	sag (0.182715)
	nje (0.16592)
	fco (0.157208)
	lun (0.150489)
	bfe (0.149858)
	fat (0.147427)
	spl (0.143184)
	csk (0.140746)
	ova (0.129132)
	eru (0.120048)