Non-Coding RNA Search

Ss1.1-Pig4-TMW8031F10.3

Sequence:


               
               CCTTTGGTGCCCACGACTTCCACCGTGTCTACATCAGCTGAACTCGTAACTCAGGGGACT
TTGGAACACCCACGGACTATGGGGGCTGTGCCTCCAGTCCCTCCTCACCCCACATCCAGT
GGCCCCCACCCTCCATTCTGGACCCTATGGGCCCAGCCCCTCCCCACGTAGTTGGTTCGG
GGGCCCCGGTGCATGCTAGTGGGTGTGGGATCAGCCAAGCTCAGTTCCACCTTTTCCCCA
AGGTCAGAGCCACAGCTTAGGGGGCACTCTCCCTGCAGGAAGGGCCTGCTGTGAGGGGCC
CGGAGCACTCAATGGAACTTCCTGGAAGCTGGTCCTAACCCTTCTTCCACCATCTCCACT
GCCCATCCCTGCCCTAAAGGGTGAATTCCCCGGGCTGTGACCTCTCACACAAGAGAGGCT
CACTACCTGCTTATACACCCACAAATGAGGATCAGGGGTGGGCTGGACCCCTAGCTCCTT
GCTCTGACTGGTCGGGTAACTCTTCACATGCTGCTCCTGGGCAGAGCTTTCCTCCTGTGG
AGTTCCTTGTGCTCTTTGGTCCTGGTCTTGTGCACAGAGCACCCCCTGGGTAGGCGACGG
GGCACCATCATTTTCCTCTGGGAAGCTCTAAGGCTGCTGCAGTCACCTTGCTCTCCTCTC
AGGAGTGCTGAACCAAGATCATCAGTTTCTATTCTAATCAGACCCCTCCTGGTCCCCTCA
CTCCCCAGCCCACTTAAAACCCACCTCATGCTTCCTTAGGCTCCTCTGGTCCTTACCCTT
GTCTCTGCTTTCATTCTGGTGGCCTTAACTGCAGTGGAGGCAGAACTTTCCAGGAGGGAG
GAGGGACACACTAGCTGCTGGGCCAACTTCCAATCATTCCAGATAGAAGAGCTTCATCTA
ACACCCTGTGACTGAGCCTGTACCCACAATGCTTCCTGTGCTGCCGGCCCCAGCAAACTC
CATGGGCTCTGAAGGCATTTTACAGGCGCCTGGAAGGTGGAGCTGCTGACAGGTGCGAGG
GTCCACTCAGACCCACAGCCCTTGTTCTGGAGGTGACTTGTATAGGCTGTTAATTGTTAT
GAATAAACGTCCAAACCTCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTTGGTGCCCACGACTTCCACCGTGTCTACATCAGCTGAACTCGTAACTCAGGGGACT
TTGGAACACCCACGGACTATGGGGGCTGTGCCTCCAGTCCCTCCTCACCCCACATCCAGT
GGCCCCCACCCTCCATTCTGGACCCTATGGGCCCAGCCCCTCCCCACGTAGTTGGTTCGG
GGGCCCCGGTGCATGCTAGTGGGTGTGGGATCAGCCAAGCTCAGTTCCACCTTTTCCCCA
AGGTCAGAGCCACAGCTTAGGGGGCACTCTCCCTGCAGGAAGGGCCTGCTGTGAGGGGCC
CGGAGCACTCAATGGAACTTCCTGGAAGCTGGTCCTAACCCTTCTTCCACCATCTCCACT
GCCCATCCCTGCCCTAAAGGGTGAATTCCCCGGGCTGTGACCTCTCACACAAGAGAGGCT
CACTACCTGCTTATACACCCACAAATGAGGATCAGGGGTGGGCTGGACCCCTAGCTCCTT
GCTCTGACTGGTCGGGTAACTCTTCACATGCTGCTCCTGGGCAGAGCTTTCCTCCTGTGG
AGTTCCTTGTGCTCTTTGGTCCTGGTCTTGTGCACAGAGCACCCCCTGGGTAGGCGACGG
GGCACCATCATTTTCCTCTGGGAAGCTCTAAGGCTGCTGCAGTCACCTTGCTCTCCTCTC
AGGAGTGCTGAACCAAGATCATCAGTTTCTATTCTAATCAGACCCCTCCTGGTCCCCTCA
CTCCCCAGCCCACTTAAAACCCACCTCATGCTTCCTTAGGCTCCTCTGGTCCTTACCCTT
GTCTCTGCTTTCATTCTGGTGGCCTTAACTGCAGTGGAGGCAGAACTTTCCAGGAGGGAG
GAGGGACACACTAGCTGCTGGGCCAACTTCCAATCATTCCAGATAGAAGAGCTTCATCTA
ACACCCTGTGACTGAGCCTGTACCCACAATGCTTCCTGTGCTGCCGGCCCCAGCAAACTC
CATGGGCTCTGAAGGCATTTTACAGGCGCCTGGAAGGTGGAGCTGCTGACAGGTGCGAGG
GTCCACTCAGACCCACAGCCCTTGTTCTGGAGGTGACTTGTATAGGCTGTTAATTGTTAT
GAATAAACGTCCAAACCTCAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.930573
               

               
               389-493, + strand, RNAz p=0.726698

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.930573
               

               
               389-493, + strand, RNAz p=0.726698

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of CR627431, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of CR627431, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1100, gnl|bosTau2|chr25 (25662174-25661083)
               

               
               1-1100, gnl|Hg17|chr16 (30692896-30694004)
               

               
               1-1100, gnl|Mm7|chr7 (123699161-123700144)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1100, gnl|bosTau2|chr25 (25662174-25661083)
               

               
               1-1100, gnl|Hg17|chr16 (30692896-30694004)
               

               
               1-1100, gnl|Mm7|chr7 (123699161-123700144)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fty (0.351679)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	40-159, - strand, RNAz p=0.930573
	389-493, + strand, RNAz p=0.726698

	1-1100, gnl\|bosTau2\|chr25 (25662174-25661083)
	1-1100, gnl\|Hg17\|chr16 (30692896-30694004)
	1-1100, gnl\|Mm7\|chr7 (123699161-123700144)

	fty (0.351679)
	nco (0.161734)
	csp (0.161186)
	hyp (0.142837)
	cst (0.140036)
	ese (0.126502)
	pgl (0.118483)
	med (0.116252)
	jca (0.11396)
	eje (0.0988338)