Non-Coding RNA Search

Ss1.1-Pig4-TMW8031F19.5

Sequence:


               
               GCAGCATGTTCTGGCTCTTGATGTTTTTAAACATTTTTTTTTTTTAAAGAAAAATTATTA
AGTACAGACAAGCCAAGATTTAAATGCATTTAATATCTCATTTCAAAAATGATTTTAATA
ATCCATTTCTTGAAGAAAACACTGGATAAATTTTGAGGCTTACAGTTTTTAAAGGCATAG
TTTTATCTTTAAAATTTAGTTTACCATCAACTTGTAAAATTATTTGAGAAAGTACAGAAG
TTTTATTTTTGTGCTTATGTGGAACCTCCATATAACGTGTTTGGGGGCTTATGTTTAAAA
GGGAACACCACCTCTGAATCCTCCCTGTAAGGCAGAAACAGTGATCCTGAATCACTGTGC
TCATACCTAAGTCGAGACTTATTTTTACTTTCATGCTGTTATGATTTAAGCTGGCCAATC
AGTGTTTTACATAAGGAAGAAAGGCAGTAACTGGTAAGGCTGCTGTTGTGTAAATGAAAG
TAGTTAGAAATACGCTGTCTACTGTTCTACCAGATTTCTCTGTTCCCCCTGTGGCTATAC
ACTGATCAGGAGTTTCTAATAGTGCTTTGAAATTAGAAATTATGTACAGAATGTTTTAAA
TCATTGGATTTTGTTTTTAAGGAAGTCTCGGTCTTTATCTTTCTTTCCACCTGGTAGGTA
TCATCCCTTTAGGGGTAAACTCGTATTTTTCCAAGCATTCAGCTTTTTCTCACTCACACT
CTTGTATTGAATGAATAGTGCATCCTTTTACTTAGCAGAAATTGCCATATTGAACAGGTT
TTGCTATTTTTAATGTGGGAGAATGTGGAAAGAAGAAGAAATGGCATTTTTAAGAGACAT
AAGTGTGAAATACTGATGATTCTCTTATGGTGTTATAGGAAAAATATATAATTTTCTATA
TCTTTCAAGGACAGAAGAGTTTCAATTTTTATTTTTCTAATTTTTATCAGTAAGTCATAA
ATACTGTTTAATCAGGCCTGATTCCATTTGAGAAAATTATAGTTCTTGATATACAGAAAA
TTTTTATTTTCGAAACAAATGTCATGAAAAATTTCCAGTTTTCAAAGCTGCGTGTTTGAC
TACTTCACATCTCTGTCCACTTTCTGAGTGAGGCCTGAGCTTGTGCCTAGGGCTTCTACC
CATGGCGATGTGTACCTGCTGGGCATTTATTCCAAAGTGGGATCAACTGTGCATGCTTGG
TATCTGGCCAGAAAGTCTTTTGCTCAGCTGATATTTGGGTGATGTCTTTCCATGGAACTA
TAACAAAAATAAAGATTTAGTTTAGTACTGCATTATTTATTTTCCTAAGGCTAAAGAGGA
ACAGACCCTTGATTTTATCCAGCATCTTTTATCTGTGAATTCATGCTGTGATAACTGCCT
TTCCTTCCTTCTGTGCCTTTAAATATAAACTTCAGTTCTGCACAAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCATGTTCTGGCTCTTGATGTTTTTAAACATTTTTTTTTTTTAAAGAAAAATTATTA
AGTACAGACAAGCCAAGATTTAAATGCATTTAATATCTCATTTCAAAAATGATTTTAATA
ATCCATTTCTTGAAGAAAACACTGGATAAATTTTGAGGCTTACAGTTTTTAAAGGCATAG
TTTTATCTTTAAAATTTAGTTTACCATCAACTTGTAAAATTATTTGAGAAAGTACAGAAG
TTTTATTTTTGTGCTTATGTGGAACCTCCATATAACGTGTTTGGGGGCTTATGTTTAAAA
GGGAACACCACCTCTGAATCCTCCCTGTAAGGCAGAAACAGTGATCCTGAATCACTGTGC
TCATACCTAAGTCGAGACTTATTTTTACTTTCATGCTGTTATGATTTAAGCTGGCCAATC
AGTGTTTTACATAAGGAAGAAAGGCAGTAACTGGTAAGGCTGCTGTTGTGTAAATGAAAG
TAGTTAGAAATACGCTGTCTACTGTTCTACCAGATTTCTCTGTTCCCCCTGTGGCTATAC
ACTGATCAGGAGTTTCTAATAGTGCTTTGAAATTAGAAATTATGTACAGAATGTTTTAAA
TCATTGGATTTTGTTTTTAAGGAAGTCTCGGTCTTTATCTTTCTTTCCACCTGGTAGGTA
TCATCCCTTTAGGGGTAAACTCGTATTTTTCCAAGCATTCAGCTTTTTCTCACTCACACT
CTTGTATTGAATGAATAGTGCATCCTTTTACTTAGCAGAAATTGCCATATTGAACAGGTT
TTGCTATTTTTAATGTGGGAGAATGTGGAAAGAAGAAGAAATGGCATTTTTAAGAGACAT
AAGTGTGAAATACTGATGATTCTCTTATGGTGTTATAGGAAAAATATATAATTTTCTATA
TCTTTCAAGGACAGAAGAGTTTCAATTTTTATTTTTCTAATTTTTATCAGTAAGTCATAA
ATACTGTTTAATCAGGCCTGATTCCATTTGAGAAAATTATAGTTCTTGATATACAGAAAA
TTTTTATTTTCGAAACAAATGTCATGAAAAATTTCCAGTTTTCAAAGCTGCGTGTTTGAC
TACTTCACATCTCTGTCCACTTTCTGAGTGAGGCCTGAGCTTGTGCCTAGGGCTTCTACC
CATGGCGATGTGTACCTGCTGGGCATTTATTCCAAAGTGGGATCAACTGTGCATGCTTGG
TATCTGGCCAGAAAGTCTTTTGCTCAGCTGATATTTGGGTGATGTCTTTCCATGGAACTA
TAACAAAAATAAAGATTTAGTTTAGTACTGCATTATTTATTTTCCTAAGGCTAAAGAGGA
ACAGACCCTTGATTTTATCCAGCATCTTTTATCTGTGAATTCATGCTGTGATAACTGCCT
TTCCTTCCTTCTGTGCCTTTAAATATAAACTTCAGTTCTGCACAAGTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1428, gnl|bosTau2|chr3 (67874035-67875451)
               

               
               1-1428, gnl|Hg17|chr1 (40427483-40428916)
               

               
               1-1428, gnl|Mm7|chr4 (120500926-120499244)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1428, gnl|bosTau2|chr3 (67874035-67875451)
               

               
               1-1428, gnl|Hg17|chr1 (40427483-40428916)
               

               
               1-1428, gnl|Mm7|chr4 (120500926-120499244)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               fce (0.271592)
               

               
               pgl (0.236967)
               

               
               cki (0.165235)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               fce (0.271592)
               

               
               pgl (0.236967)
               

               
               cki (0.165235)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

	1-1428, gnl\|bosTau2\|chr3 (67874035-67875451)
	1-1428, gnl\|Hg17\|chr1 (40427483-40428916)
	1-1428, gnl\|Mm7\|chr4 (120500926-120499244)

	vin (0.332557)
	tbr (0.308356)
	fce (0.271592)
	pgl (0.236967)
	cki (0.165235)
	ski (0.146735)
	hyp (0.142837)
	ste (0.135208)
	ova (0.129132)
	ret (0.128733)
	cbr (0.127975)
	bla (0.124347)
	ldo (0.0970026)