Ss1.1-Pig4-TMW8031G08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGGGCCCTATCCTCACAGCAAGTGGCAAAAATCCCGTAATGGAGCTCAATGAAAAAAGA AGAGGTCTTAAGTATGAACTCATCTCGGAGACTGGTGGAAGCCATGACAAACGCTTTGTA ATGGAGGTGGAAGTAGATGGACAGAAATTCAGAGGTGCAGGTCCAAATAAGAAAGTGGCA AAGGCAAGTGCAGCTTTAGCTGCCCTGGAGAAGCTGTTTTCTGGACCCAATGCAGCAAAT AATAAGAAAAAGAAGATTATCCCTCAGGCAAAGGGTATTGTGAATACAGCTGTGTCTGCA GCAGTCCAAGCTGTTCGGGGCAGAGGAAGAGGAGCTCTGACAAGGGGAGCTTTTGTTGGG GCCACAGCTGCTCCTGGCTACATAGCTCCAGGCTATGGAACACCCTATGGTTACAGCACA GCTGCCCCTGCCTATGGTTTACCCAAGAGAATGGTTCTGTTACCTGTTATGAAATTCCCA ACATATCCTGTTCCCCACTACTCATTCTTTTAGCAAATGACAGAAGCTAATTCCTATTGA ACAACAACAGTACATTCAGAATGTTAGAGAAAAAGCCTTTTTATCCTGCTTTCTTTGAAC ACATACTTGATCAAAATTATTTGTAAAAGAACATCTTTCCTACTTTTTGATTTTAACAAA TGCAAATTTAGTTCTCTAAAACTTGAAAACAAACAACAAAAGAAACTAGTTCTGTGAAAC GGTACCTCATTTCCGGAAAATAACTTATACCAGCCCTTCTGTTCTAGGGAAGTAAGTCTA GCAGTTCAAAGTTTAAGAGGAGTATCAGATTATGTAAAATTAAATTTGTGAAGGATGTAT AGAGTCTCACACACTGATCACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGT TCCTGACGCAGTCACTGATGCTTAGCTGAGGGATATGTGTTTGCCCCAGGGCACTTTAAT TCGGGCTGTAGTTATTTTTTTTAACACAATAGAAACTTTTCATTTAAACTTTAACTTTGT AAATATTGAAGTGTGTAATTAAAGCCAATAAAATATGGGTTTGAATATTGTTTTAGCTTA TTATTTTTGATATGTTTTGGTATCAAATTATAAATTGAAAACTAATAATAACTTTGCCCT AGAAACCCATTCATTTGTGAGCAAACTGATAAAACAAAGCCAAGGCGCTTGTTAGTTAGA GCCAGTCTCCTTACTCTGTAAGCCCTTTGTACTCCTGCCGTACAAGGGCATCCCTGTGAT AAAGGTATATATTCTGTTATCTGAGCATTGCTTATTAAAATGATGGCACTACCCAGAGAT GGGGAAGGAGGAATGTGATTATTTTAGTTTCCGAATTTCCAAGTTTTAAAAAGTAATAAA TTAATCGGTCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGGGCCCTATCCTCACAGCAAGTGGCAAAAATCCCGTAATGGAGCTCAATGAAAAAAGA AGAGGTCTTAAGTATGAACTCATCTCGGAGACTGGTGGAAGCCATGACAAACGCTTTGTA ATGGAGGTGGAAGTAGATGGACAGAAATTCAGAGGTGCAGGTCCAAATAAGAAAGTGGCA AAGGCAAGTGCAGCTTTAGCTGCCCTGGAGAAGCTGTTTTCTGGACCCAATGCAGCAAAT AATAAGAAAAAGAAGATTATCCCTCAGGCAAAGGGTATTGTGAATACAGCTGTGTCTGCA GCAGTCCAAGCTGTTCGGGGCAGAGGAAGAGGAGCTCTGACAAGGGGAGCTTTTGTTGGG GCCACAGCTGCTCCTGGCTACATAGCTCCAGGCTATGGAACACCCTATGGTTACAGCACA GCTGCCCCTGCCTATGGTTTACCCAAGAGAATGGTTCTGTTACCTGTTATGAAATTCCCA ACATATCCTGTTCCCCACTACTCATTCTTTTAGCAAATGACAGAAGCTAATTCCTATTGA ACAACAACAGTACATTCAGAATGTTAGAGAAAAAGCCTTTTTATCCTGCTTTCTTTGAAC ACATACTTGATCAAAATTATTTGTAAAAGAACATCTTTCCTACTTTTTGATTTTAACAAA TGCAAATTTAGTTCTCTAAAACTTGAAAACAAACAACAAAAGAAACTAGTTCTGTGAAAC GGTACCTCATTTCCGGAAAATAACTTATACCAGCCCTTCTGTTCTAGGGAAGTAAGTCTA GCAGTTCAAAGTTTAAGAGGAGTATCAGATTATGTAAAATTAAATTTGTGAAGGATGTAT AGAGTCTCACACACTGATCACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGT TCCTGACGCAGTCACTGATGCTTAGCTGAGGGATATGTGTTTGCCCCAGGGCACTTTAAT TCGGGCTGTAGTTATTTTTTTTAACACAATAGAAACTTTTCATTTAAACTTTAACTTTGT AAATATTGAAGTGTGTAATTAAAGCCAATAAAATATGGGTTTGAATATTGTTTTAGCTTA TTATTTTTGATATGTTTTGGTATCAAATTATAAATTGAAAACTAATAATAACTTTGCCCT AGAAACCCATTCATTTGTGAGCAAACTGATAAAACAAAGCCAAGGCGCTTGTTAGTTAGA GCCAGTCTCCTTACTCTGTAAGCCCTTTGTACTCCTGCCGTACAAGGGCATCCCTGTGAT AAAGGTATATATTCTGTTATCTGAGCATTGCTTATTAAAATGATGGCACTACCCAGAGAT GGGGAAGGAGGAATGTGATTATTTTAGTTTCCGAATTTCCAAGTTTTAAAAAGTAATAAA TTAATCGGTCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 125-268, + strand, RNAz p=0.990923 | |
| 125-268, - strand, RNAz p=0.990923 | |
| 125-268, + strand, RNAz p=0.989305 | |
| 125-268, - strand, RNAz p=0.989305 | |
| 1130-1328, - strand, RNAz p=0.777821 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 125-268, + strand, RNAz p=0.990923 | |
| 125-268, - strand, RNAz p=0.990923 | |
| 125-268, + strand, RNAz p=0.989305 | |
| 125-268, - strand, RNAz p=0.989305 | |
| 1130-1328, - strand, RNAz p=0.777821 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AL833947, + |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 125-268, gnl|bosTau2|chr11 (75690544-75690401) | |
| 125-268, gnl|canFam2|chr9 (63003523-63003367) | |
| 125-268, gnl|danRer3|chr10 (3556646-3556497) | |
| 125-268, gnl|dasNov1|scaffold_33646 (6776-6932) | |
| 125-268, gnl|echTel1|scaffold_184066 (2972-3128) | |
| 125-268, gnl|fr1|chrUn (61188314-61188456) | |
| 125-268, gnl|galGal2|chr17 (1525522-1525366) | |
| 125-268, gnl|hg17|chr9 (122977868-122978024) | |
| 125-268, gnl|Hg17|chr9 (122978016-122977873) | |
| 125-268, gnl|loxAfr1|scaffold_3551 (29712-29555) | |
| 125-268, gnl|mm7|chr2 (37604009-37604165) | |
| 125-268, gnl|Mm7|chr2 (37604157-37604014) | |
| 125-268, gnl|monDom2|scaffold_38 (16690809-16690965) | |
| 125-268, gnl|oryCun1|scaffold_210600 (96869-96713) | |
| 125-268, gnl|panTro1|chr11 (107683137-107683293) | |
| 125-268, gnl|rheMac2|chr15 (12591199-12591043) | |
| 125-268, gnl|rn3|chr3 (17248352-17248508) | |
| 125-268, gnl|tetNig1|chrUn_random (109314392-109314542) | |
| 125-268, gnl|xenTro1|scaffold_257 (1067191-1067347) | |
| 436-1392, gnl|bosTau2|chr11 (75680389-75679426) | |
| 436-1392, gnl|Hg17|chr9 (122967507-122966546) | |
| 436-1392, gnl|Mm7|chr2 (37591418-37590468) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 125-268, gnl|bosTau2|chr11 (75690544-75690401) | |
| 125-268, gnl|canFam2|chr9 (63003523-63003367) | |
| 125-268, gnl|danRer3|chr10 (3556646-3556497) | |
| 125-268, gnl|dasNov1|scaffold_33646 (6776-6932) | |
| 125-268, gnl|echTel1|scaffold_184066 (2972-3128) | |
| 125-268, gnl|fr1|chrUn (61188314-61188456) | |
| 125-268, gnl|galGal2|chr17 (1525522-1525366) | |
| 125-268, gnl|hg17|chr9 (122977868-122978024) | |
| 125-268, gnl|Hg17|chr9 (122978016-122977873) | |
| 125-268, gnl|loxAfr1|scaffold_3551 (29712-29555) | |
| 125-268, gnl|mm7|chr2 (37604009-37604165) | |
| 125-268, gnl|Mm7|chr2 (37604157-37604014) | |
| 125-268, gnl|monDom2|scaffold_38 (16690809-16690965) | |
| 125-268, gnl|oryCun1|scaffold_210600 (96869-96713) | |
| 125-268, gnl|panTro1|chr11 (107683137-107683293) | |
| 125-268, gnl|rheMac2|chr15 (12591199-12591043) | |
| 125-268, gnl|rn3|chr3 (17248352-17248508) | |
| 125-268, gnl|tetNig1|chrUn_random (109314392-109314542) | |
| 125-268, gnl|xenTro1|scaffold_257 (1067191-1067347) | |
| 436-1392, gnl|bosTau2|chr11 (75680389-75679426) | |
| 436-1392, gnl|Hg17|chr9 (122967507-122966546) | |
| 436-1392, gnl|Mm7|chr2 (37591418-37590468) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| sme (0.305437) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fco (0.157208) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| ssp (0.13552) | |
| bla (0.124347) | |
| tra (0.123092) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fco (0.157208) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| ssp (0.13552) | |
| bla (0.124347) | |
| tra (0.123092) |