Non-Coding RNA Search

Ss1.1-Pig4-TMW8031G10.3

Sequence:


               
               TGTTTACCTGGATACCAGGGCGAGAAGTGTGAAAAATTGGTCAGTGTGAATTTTGTAAAC
AAGGAGTCTTATCTTCAAATCCCTTCCGCCAAGGTTCGGCCTCAAACAAACATCACTCTT
CAGATTGCCACAGATGAGGACAGTGGGATCCTCCTGTACAAGGGTGACAAAGACCATATC
GCCGTTGAGCTCTACCGGGGACGTGTCCGCGCCAGCTACGACACCGGTTCCCACCCGGCC
TCTGCCATTTACAGCGTGGAGACGATCAACGATGGAAATTTTCACATTGTGGAACTACTC
GCCCTGGATCAAAGTCTCTCCCTCTCTGTGGATGGAGGGAGCCCCAAGATCATTACCAAC
CTGTCCAAACAGTCCACTCTGAACTTTGACTCCCCACTTTATGTTGGAGGCATGCCAGGG
AAGAACAACGTGGCAGCAGCTCTGCGCCAGGCCCCTGGGCACAACGGCACCAGCTTCCAT
GGCTGTATCCGGAACCTTTACATCAACAGCGAGCTGCAGGACTTCCGGAAGGTGCCCATG
CAGACGGGCATCCTGCCTGGCTGTGAGCCATGCCACAAGAAGGTGTGTGCCCATGGCACC
TGCCAGCCCAGCAGCCAGTCCGGCTTTACCTGCGAATGCGAAGAAGGATGGACGGGGCCC
CTCTGCGACCAGAGGACCAACGACCCCTGTCTTGGAAATAAGTGCGTCCATGGCACCTGC
CTGCCCATCAACGCCTTCTCCTACAGCTGCAAGTGCCTGGAGGGCCATGGGGGTGTCCTC
TGTGATGAAGAGGAGGATCTGTTTAACCCCTGCCAGGCGATCAATTGTAAGCATGGGAAA
TGCAGGCTCTCAGGACTGGGGCAGCCGTACTGTGAATGCAGCAGTGGATACACTGGGGAC
AGCTGTGATCGAGAAATCTCTTGTCGAGGGGAACGGATAAGAGATTACTACCAAAAGCAG
CAGGGCTATGCCGCTTGCCAAACCACCAAGAAGGTCTCCAGGTTGGAGTGCAGGGGCGGG
TGCGCCGGAGGGCAGTGCTGCCGGCCGCTGAGGAGCAAGCGCAGGAAATACTCTTTCGAG
TGCACGGATGGGTCGTCGTTTGTGGACGAGGTTGAGAAGGTGGTGAAGTGCGGCTGTAGC
CACTGCACCTCCTAAGCGAACCCCTGGCGGCTCTGGTCCTTGGAGAATGTCGTTATCCTT
CTTGACCCTGTCGGACTCATGAATGCTTCATAGTGGAAATATTTGAAATATATTGTAAAA
TACAGAACAGACTTATTTTTATTATGAGAATGAAGACTTTTTTTTTCTGCATTGAGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTACCTGGATACCAGGGCGAGAAGTGTGAAAAATTGGTCAGTGTGAATTTTGTAAAC
AAGGAGTCTTATCTTCAAATCCCTTCCGCCAAGGTTCGGCCTCAAACAAACATCACTCTT
CAGATTGCCACAGATGAGGACAGTGGGATCCTCCTGTACAAGGGTGACAAAGACCATATC
GCCGTTGAGCTCTACCGGGGACGTGTCCGCGCCAGCTACGACACCGGTTCCCACCCGGCC
TCTGCCATTTACAGCGTGGAGACGATCAACGATGGAAATTTTCACATTGTGGAACTACTC
GCCCTGGATCAAAGTCTCTCCCTCTCTGTGGATGGAGGGAGCCCCAAGATCATTACCAAC
CTGTCCAAACAGTCCACTCTGAACTTTGACTCCCCACTTTATGTTGGAGGCATGCCAGGG
AAGAACAACGTGGCAGCAGCTCTGCGCCAGGCCCCTGGGCACAACGGCACCAGCTTCCAT
GGCTGTATCCGGAACCTTTACATCAACAGCGAGCTGCAGGACTTCCGGAAGGTGCCCATG
CAGACGGGCATCCTGCCTGGCTGTGAGCCATGCCACAAGAAGGTGTGTGCCCATGGCACC
TGCCAGCCCAGCAGCCAGTCCGGCTTTACCTGCGAATGCGAAGAAGGATGGACGGGGCCC
CTCTGCGACCAGAGGACCAACGACCCCTGTCTTGGAAATAAGTGCGTCCATGGCACCTGC
CTGCCCATCAACGCCTTCTCCTACAGCTGCAAGTGCCTGGAGGGCCATGGGGGTGTCCTC
TGTGATGAAGAGGAGGATCTGTTTAACCCCTGCCAGGCGATCAATTGTAAGCATGGGAAA
TGCAGGCTCTCAGGACTGGGGCAGCCGTACTGTGAATGCAGCAGTGGATACACTGGGGAC
AGCTGTGATCGAGAAATCTCTTGTCGAGGGGAACGGATAAGAGATTACTACCAAAAGCAG
CAGGGCTATGCCGCTTGCCAAACCACCAAGAAGGTCTCCAGGTTGGAGTGCAGGGGCGGG
TGCGCCGGAGGGCAGTGCTGCCGGCCGCTGAGGAGCAAGCGCAGGAAATACTCTTTCGAG
TGCACGGATGGGTCGTCGTTTGTGGACGAGGTTGAGAAGGTGGTGAAGTGCGGCTGTAGC
CACTGCACCTCCTAAGCGAACCCCTGGCGGCTCTGGTCCTTGGAGAATGTCGTTATCCTT
CTTGACCCTGTCGGACTCATGAATGCTTCATAGTGGAAATATTTGAAATATATTGTAAAA
TACAGAACAGACTTATTTTTATTATGAGAATGAAGACTTTTTTTTTCTGCATTGAGGAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               253-416, gnl|bosTau2|chr6 (19944648-19944485)
               

               
               253-416, gnl|Hg17|chr4 (20287903-20288066)
               

               
               253-416, gnl|Mm7|chr5 (47622285-47622448)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               253-416, gnl|bosTau2|chr6 (19944648-19944485)
               

               
               253-416, gnl|Hg17|chr4 (20287903-20288066)
               

               
               253-416, gnl|Mm7|chr5 (47622285-47622448)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               gul (0.177588)
               

               
               cut (0.169924)
               

               
               spl (0.143184)
               

               
               ova (0.129132)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               cut (0.169924)
               

               
               spl (0.143184)
               

               
               ova (0.129132)

	253-416, gnl\|bosTau2\|chr6 (19944648-19944485)
	253-416, gnl\|Hg17\|chr4 (20287903-20288066)
	253-416, gnl\|Mm7\|chr5 (47622285-47622448)