Non-Coding RNA Search

Ss1.1-Pig4-TMW8031G11.3

Sequence:


               
               GTCCCAGTTCTGGGGCTCTGGCCCCCCCTTCCCCTGACCCTCACACACAGCCTCCCCACA
GCTGTTTCACCCCTCGCCCTGCTGGACCTGGCCTGTCCTCAGGAATGTAATTATGAAGAG
TTGACAAGTTTGCAGCTTTCCTGCTTTAGGGGGAAAGGGAGCATGGGGGCGACCCTGCCT
AGTGTCAGTAGGGACTGCAGTCTGTCTCCAACTACTGAGGACTTGGCCCAGGCCCACAGC
AGGCAGGCTGCATGTTGCATTTGGGCCGTGTTGTAATACAGGCCTCTCCCTCTGCTCTGG
GATGTGGCTGGGCCTCTCCTGGAAAAGGAGAAGGAGACACTGCTTATTTGATGGCTATCA
TTTCTGGCCTGTTTGCTGAGATGAATTGGGAGCTGCCAGAGTCCTTTGAAGTCTCTCTCT
TGGACATCTTTCCATTGTGATGTGAGCTCTGTTAAGACACAGGCTAAGCTGCTCTAATAA
GGAGAACCTAAAGTACAGTGGCTCTTAGAAGTTGGTGTTTCTCTTTTCTAACAGTACAGA
GTAATCAGATAGTCTGGGGAGATTTAACTCCCCGAGGTCATTAGGAACTCGATTTCCTTC
TGTCTTGTTCTGCCACCCTAGGGTGTTCTCCTTGGGTGAGTCCAAGCAGTCTTCAGCTCC
ACATCCATATCCCCTGGGGAAAAAGAGGGACCAGGTTTCTTTCTTAAAGGATATGACCTG
GAGTTGTCCAAGTTACTCTGGTCACACTTTGCTGAAAGGGTCTCTGGGACCTAGAGCCTC
TTCCTTGGGTGGTCGCATGCCCAGTTAAAGCTCTGGGGGTTCTGTGACTAAAAGATGAAG
GAGAAAACAGATTTGGGGGCCCAATTAGTAGCCTCTGCTACATAGAGCTCCATGGATGTG
CCCAAGAATGCTTGCTGGTATTTTGCAGAGAGCACCCCTGTGAGTTAGCCACTCATTTCT
ACCAGTTGGGTTGGGACAGAGCTGATGCCAGAGCCACTTTAGCTGGAGCAGTCACACTGG
GAAGTCACTTCCGCACCCCCTGCCTAAGTCTCAGCATCAAGACCTCTCCAATTCTCATGA
GCCCAGAGCTTTGGGTTGGGCAGTTGACCTGAGGCTCACGCTGTGTTTCATGGTTTCCTG
AGCTCTTCCTCCTCGTCTCGTTTGAGCCTCAAAGCTGCTCATTTGACGACCTGCATTGCC
TGCCCACCCTGCTCCTGCTTTGGAAATGTTCAGTCTGGGTGATGTCGAGATACACGGTCA
GAGATGGTCTTGGGAGATGTGTCACTGTACACACTGCAGTGTTGTCCTCAAGGATACTTT
CCCTCATCAAAGCCACCTAAAGAGAAATTGTTTTCAGATCTAAAGCCTCTGCAGCAACAA
TCAGGTAGTGGTCATGTTTTTTTCCCTTTTAGCTTTGGCTGGCAGAAGGCTCAATTCAGC
TTTATAACTGGAGGACCTGTCATCCTGTTTTTTGTTCTTACCTCTTCCTGACTTTGTTCC
CTTGTCTCATTTTTACTTTTTTAAATGGAGGTATGTTTTAGGTATTATTTTCACGCAATA
AAATGCAGAGATTTTTTATGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCCAGTTCTGGGGCTCTGGCCCCCCCTTCCCCTGACCCTCACACACAGCCTCCCCACA
GCTGTTTCACCCCTCGCCCTGCTGGACCTGGCCTGTCCTCAGGAATGTAATTATGAAGAG
TTGACAAGTTTGCAGCTTTCCTGCTTTAGGGGGAAAGGGAGCATGGGGGCGACCCTGCCT
AGTGTCAGTAGGGACTGCAGTCTGTCTCCAACTACTGAGGACTTGGCCCAGGCCCACAGC
AGGCAGGCTGCATGTTGCATTTGGGCCGTGTTGTAATACAGGCCTCTCCCTCTGCTCTGG
GATGTGGCTGGGCCTCTCCTGGAAAAGGAGAAGGAGACACTGCTTATTTGATGGCTATCA
TTTCTGGCCTGTTTGCTGAGATGAATTGGGAGCTGCCAGAGTCCTTTGAAGTCTCTCTCT
TGGACATCTTTCCATTGTGATGTGAGCTCTGTTAAGACACAGGCTAAGCTGCTCTAATAA
GGAGAACCTAAAGTACAGTGGCTCTTAGAAGTTGGTGTTTCTCTTTTCTAACAGTACAGA
GTAATCAGATAGTCTGGGGAGATTTAACTCCCCGAGGTCATTAGGAACTCGATTTCCTTC
TGTCTTGTTCTGCCACCCTAGGGTGTTCTCCTTGGGTGAGTCCAAGCAGTCTTCAGCTCC
ACATCCATATCCCCTGGGGAAAAAGAGGGACCAGGTTTCTTTCTTAAAGGATATGACCTG
GAGTTGTCCAAGTTACTCTGGTCACACTTTGCTGAAAGGGTCTCTGGGACCTAGAGCCTC
TTCCTTGGGTGGTCGCATGCCCAGTTAAAGCTCTGGGGGTTCTGTGACTAAAAGATGAAG
GAGAAAACAGATTTGGGGGCCCAATTAGTAGCCTCTGCTACATAGAGCTCCATGGATGTG
CCCAAGAATGCTTGCTGGTATTTTGCAGAGAGCACCCCTGTGAGTTAGCCACTCATTTCT
ACCAGTTGGGTTGGGACAGAGCTGATGCCAGAGCCACTTTAGCTGGAGCAGTCACACTGG
GAAGTCACTTCCGCACCCCCTGCCTAAGTCTCAGCATCAAGACCTCTCCAATTCTCATGA
GCCCAGAGCTTTGGGTTGGGCAGTTGACCTGAGGCTCACGCTGTGTTTCATGGTTTCCTG
AGCTCTTCCTCCTCGTCTCGTTTGAGCCTCAAAGCTGCTCATTTGACGACCTGCATTGCC
TGCCCACCCTGCTCCTGCTTTGGAAATGTTCAGTCTGGGTGATGTCGAGATACACGGTCA
GAGATGGTCTTGGGAGATGTGTCACTGTACACACTGCAGTGTTGTCCTCAAGGATACTTT
CCCTCATCAAAGCCACCTAAAGAGAAATTGTTTTCAGATCTAAAGCCTCTGCAGCAACAA
TCAGGTAGTGGTCATGTTTTTTTCCCTTTTAGCTTTGGCTGGCAGAAGGCTCAATTCAGC
TTTATAACTGGAGGACCTGTCATCCTGTTTTTTGTTCTTACCTCTTCCTGACTTTGTTCC
CTTGTCTCATTTTTACTTTTTTAAATGGAGGTATGTTTTAGGTATTATTTTCACGCAATA
AAATGCAGAGATTTTTTATGAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               709-868, + strand, RNAz p=0.997239

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               709-868, + strand, RNAz p=0.997239

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004275, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004275, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               7-1578, gnl|bosTau2|chr23 (15398992-15397394)
               

               
               7-1578, gnl|Hg17|chr6 (41982645-41981071)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1578, gnl|bosTau2|chr23 (15398992-15397394)
               

               
               7-1578, gnl|Hg17|chr6 (41982645-41981071)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fce (0.271592)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	7-1578, gnl\|bosTau2\|chr23 (15398992-15397394)
	7-1578, gnl\|Hg17\|chr6 (41982645-41981071)

	fce (0.271592)
	sin (0.174948)
	cje (0.165235)
	tra (0.123092)
	eep (0.122564)
	jca (0.11396)
	eje (0.0988338)