Non-Coding RNA Search

Ss1.1-Pig4-TMW8031G16.3

Sequence:


               
               GCTGCCCGCGGTGGCTCCCGCGACTCCCGGCGGCTCCAGTGGCGGCGCCGTTCCTCAGCC
CGCGCTTCTTCCGGACGCACGGCGCGGGCACCTCCCGCCGCGCCGCAGCTTCGCCGCCGC
TCGGGCTCCAGCGGTGGCGCGGCTCATGCCTCCCGGCGCGGAGCGCTCAGGTGGGCCGGC
CGCCGCGGGGAGATAGGCCCCCGGGGGCGGCGGCGGCTGGACCATGGCCCGGAGACCCCG
GGCGCCGGCTGCCTACGGGGAGGACTTCTCCTTCGTCAGCCCGCTGGTGAAATACCTGCT
CTTCTTCTTCAACATGCTCTTCTGGGTGATTTCCATGGTGATGGTGGCCGTGGGAATCTA
CGCTCGGCTAATGAAGCATGCAGAAGCTGCGCTGGCATGCCTGGCAGTGGACCCTGCCAT
CCTGCTGATCGTGGTGGGCGTCCTCATGTTCCTGCTCACCTTCTGCGGCTGCATCGGATC
TCTCCGAGAGAACATCTGCCTCCTGCAGACATTCTCGCTCTGTCTCACCATCGTGTTCCT
GCTACAGCTGGCAGCCGGCGTCCTGGGCTTTGTGTTCTCAGACAAGGCTCGGGGGAAAGT
GAATGAGATCATCAATAATGCCATCGTGCACTACCGAGATGACTTGGATCTGCAGAATCT
CATTGATTTTGGCCAGAAGAAGTTCGGCTGCTGTGGAGGGATTTCCTACAAGGACTGGTC
CCTGAACATGTACTTCAATTGTTCGGAAGACAACCCCAGCCGTGAGCGCTGCTCTGTGCC
TTACTCCTGCTGCTTGCCTGTCCCCAACCAGGCAGTGATCAACACCATGTGTGGCCAAGG
TATGCAGGCCCTTGACTACCTAGAAGCTAGTAAAATCATCTACACCAATGGCTGTATTGA
CAGATTGGTCAACTGGATACACAGCAACCTCTTCGTACTCGGTGGTGTGGCACTGGGCCT
AGCCATCCCCCAGCTGGTGGGAATCCTGCTGTCTATGATCCTCATGAGTCAGATCAAAGA
TCAGATCAAGCTACAGCTCTACAACCAGCAGCACCGGGCTGACCCATGGTACTGAGAATC
CATCCTGCACCTCTTCAGTAGGGCAGCAGGCAAGCCTCATCAACCAACAGCCGTGGTTAC
ATCTCTCAGCACCAAATGGAGATTTGGATTCCAGCCCCCCAGAGCGAGAGCCCAGGGGGA
AGAAGCAACTCCAGATTGCAGAAGGCAGGGTGCACAGGTGGCTCAAGGCTGGGAAGGATG
TGGCCCCTCTCCCCCTCCTAGCTCTCAGCATTGTTGTTTTGTTCTGTTTCTAACCTTAAG
CATTTGGGTTTATGTTTGGTTTGGTTTGTTTTGTTTTGTCTGAGCAGAGTTGCTTGAGCA
ACAGCAGGGGCACAGAGTTGTGCGGGCATTAGGCTTCTCACAGAGGCGCTAAAACTGACA
ACTCTGCTAGGGCTGCTCCTGAGCTTGAACATTCTCAGATTCTGGCTGTTGCCAGCGAGA
CCTTCCTGGGGAGTGGACACCAGGAACCCCGCCTGGAGTCCAGTTGACATGATACCAGCT
CCAGAAGGGAAGAGAGTGGAGCAGGCAATGAGCATGGGGGTCGGATGGGGACAGTTGTAT
GTGCTGGGTAGGAGTGGAAGGCGATGTGTTTACTAACTGCCTGGCAGGCCATCCTCCCAG
GTAGTCTGAGTGAGCTACATCCTGCCCCTCCCTCATTTCCATGGAAACGGGGCAGCAAGG
GCAAGGGGTCCAATAGCAGCCAAACTCATCTCTTCTCCCCTCCTTTAAAAAAATGTTTGG
AACCATGCTCTCTATATTCTGAAGCCAGCAGAGGTGGGACTGAGCCATAGGTGCCCTTGA
ATTCCTCCCCTGTCTGGCCCTTCCTCCCCAGCAAGTGGGGTATTTCTTAACCTTGGCAGT
GTGCAAAGAAAGAGAGGTAATACCCCCCATTCCTCTGCATCAGAGCTTAGTGTTTCTACA
ATGTAAGCAGGGATCTTGCTGGGGCTGGGGGAGCCAGAAATGGCAATAAAAGTTTGTTGA
CCTGGGCTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCCCGCGGTGGCTCCCGCGACTCCCGGCGGCTCCAGTGGCGGCGCCGTTCCTCAGCC
CGCGCTTCTTCCGGACGCACGGCGCGGGCACCTCCCGCCGCGCCGCAGCTTCGCCGCCGC
TCGGGCTCCAGCGGTGGCGCGGCTCATGCCTCCCGGCGCGGAGCGCTCAGGTGGGCCGGC
CGCCGCGGGGAGATAGGCCCCCGGGGGCGGCGGCGGCTGGACCATGGCCCGGAGACCCCG
GGCGCCGGCTGCCTACGGGGAGGACTTCTCCTTCGTCAGCCCGCTGGTGAAATACCTGCT
CTTCTTCTTCAACATGCTCTTCTGGGTGATTTCCATGGTGATGGTGGCCGTGGGAATCTA
CGCTCGGCTAATGAAGCATGCAGAAGCTGCGCTGGCATGCCTGGCAGTGGACCCTGCCAT
CCTGCTGATCGTGGTGGGCGTCCTCATGTTCCTGCTCACCTTCTGCGGCTGCATCGGATC
TCTCCGAGAGAACATCTGCCTCCTGCAGACATTCTCGCTCTGTCTCACCATCGTGTTCCT
GCTACAGCTGGCAGCCGGCGTCCTGGGCTTTGTGTTCTCAGACAAGGCTCGGGGGAAAGT
GAATGAGATCATCAATAATGCCATCGTGCACTACCGAGATGACTTGGATCTGCAGAATCT
CATTGATTTTGGCCAGAAGAAGTTCGGCTGCTGTGGAGGGATTTCCTACAAGGACTGGTC
CCTGAACATGTACTTCAATTGTTCGGAAGACAACCCCAGCCGTGAGCGCTGCTCTGTGCC
TTACTCCTGCTGCTTGCCTGTCCCCAACCAGGCAGTGATCAACACCATGTGTGGCCAAGG
TATGCAGGCCCTTGACTACCTAGAAGCTAGTAAAATCATCTACACCAATGGCTGTATTGA
CAGATTGGTCAACTGGATACACAGCAACCTCTTCGTACTCGGTGGTGTGGCACTGGGCCT
AGCCATCCCCCAGCTGGTGGGAATCCTGCTGTCTATGATCCTCATGAGTCAGATCAAAGA
TCAGATCAAGCTACAGCTCTACAACCAGCAGCACCGGGCTGACCCATGGTACTGAGAATC
CATCCTGCACCTCTTCAGTAGGGCAGCAGGCAAGCCTCATCAACCAACAGCCGTGGTTAC
ATCTCTCAGCACCAAATGGAGATTTGGATTCCAGCCCCCCAGAGCGAGAGCCCAGGGGGA
AGAAGCAACTCCAGATTGCAGAAGGCAGGGTGCACAGGTGGCTCAAGGCTGGGAAGGATG
TGGCCCCTCTCCCCCTCCTAGCTCTCAGCATTGTTGTTTTGTTCTGTTTCTAACCTTAAG
CATTTGGGTTTATGTTTGGTTTGGTTTGTTTTGTTTTGTCTGAGCAGAGTTGCTTGAGCA
ACAGCAGGGGCACAGAGTTGTGCGGGCATTAGGCTTCTCACAGAGGCGCTAAAACTGACA
ACTCTGCTAGGGCTGCTCCTGAGCTTGAACATTCTCAGATTCTGGCTGTTGCCAGCGAGA
CCTTCCTGGGGAGTGGACACCAGGAACCCCGCCTGGAGTCCAGTTGACATGATACCAGCT
CCAGAAGGGAAGAGAGTGGAGCAGGCAATGAGCATGGGGGTCGGATGGGGACAGTTGTAT
GTGCTGGGTAGGAGTGGAAGGCGATGTGTTTACTAACTGCCTGGCAGGCCATCCTCCCAG
GTAGTCTGAGTGAGCTACATCCTGCCCCTCCCTCATTTCCATGGAAACGGGGCAGCAAGG
GCAAGGGGTCCAATAGCAGCCAAACTCATCTCTTCTCCCCTCCTTTAAAAAAATGTTTGG
AACCATGCTCTCTATATTCTGAAGCCAGCAGAGGTGGGACTGAGCCATAGGTGCCCTTGA
ATTCCTCCCCTGTCTGGCCCTTCCTCCCCAGCAAGTGGGGTATTTCTTAACCTTGGCAGT
GTGCAAAGAAAGAGAGGTAATACCCCCCATTCCTCTGCATCAGAGCTTAGTGTTTCTACA
ATGTAAGCAGGGATCTTGCTGGGGCTGGGGGAGCCAGAAATGGCAATAAAAGTTTGTTGA
CCTGGGCTAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61829530|ref|XP_586178.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61829530|ref|XP_586178.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1089-1790, - strand, RNAz p=0.919552
               

               
               1420-1509, - strand, RNAz p=0.925382

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1089-1790, - strand, RNAz p=0.919552
               

               
               1420-1509, - strand, RNAz p=0.925382

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-107, gnl|bosTau2|chr15 (3754191-3754298)
               


               
               381-510, gnl|bosTau2|chr4 (49845450-49845321)
               

               
               381-510, gnl|Hg17|chr7 (128396183-128396312)
               

               
               381-510, gnl|Mm7|chr6 (29642730-29642859)
               


               
               681-812, gnl|bosTau2|chr4 (49841895-49841764)
               

               
               681-812, gnl|Hg17|chr7 (128400568-128400699)
               

               
               681-812, gnl|Mm7|chr6 (29648849-29648980)
               


               
               970-1509, gnl|bosTau2|chr4 (49841019-49840498)
               

               
               970-1509, gnl|Hg17|chr7 (128401561-128402103)
               

               
               970-1509, gnl|Mm7|chr6 (29649679-29650211)
               


               
               1520-2049, gnl|bosTau2|chr4 (49840515-49839987)
               

               
               1520-2049, gnl|Hg17|chr7 (128402058-128402626)
               

               
               1520-2049, gnl|Mm7|chr6 (29650169-29650707)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-107, gnl|bosTau2|chr15 (3754191-3754298)
               


               
               381-510, gnl|bosTau2|chr4 (49845450-49845321)
               

               
               381-510, gnl|Hg17|chr7 (128396183-128396312)
               

               
               381-510, gnl|Mm7|chr6 (29642730-29642859)
               


               
               681-812, gnl|bosTau2|chr4 (49841895-49841764)
               

               
               681-812, gnl|Hg17|chr7 (128400568-128400699)
               

               
               681-812, gnl|Mm7|chr6 (29648849-29648980)
               


               
               970-1509, gnl|bosTau2|chr4 (49841019-49840498)
               

               
               970-1509, gnl|Hg17|chr7 (128401561-128402103)
               

               
               970-1509, gnl|Mm7|chr6 (29649679-29650211)
               


               
               1520-2049, gnl|bosTau2|chr4 (49840515-49839987)
               

               
               1520-2049, gnl|Hg17|chr7 (128402058-128402626)
               

               
               1520-2049, gnl|Mm7|chr6 (29650169-29650707)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cga (0.558191)
               

               
               fce (0.543183)
               

               
               mcp (0.341297)
               

               
               hyp (0.285673)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.558191)
               

               
               fce (0.543183)
               

               
               mcp (0.341297)
               

               
               hyp (0.285673)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	1089-1790, - strand, RNAz p=0.919552
	1420-1509, - strand, RNAz p=0.925382

	1-107, gnl\|bosTau2\|chr15 (3754191-3754298)

	381-510, gnl\|bosTau2\|chr4 (49845450-49845321)
	381-510, gnl\|Hg17\|chr7 (128396183-128396312)
	381-510, gnl\|Mm7\|chr6 (29642730-29642859)

	681-812, gnl\|bosTau2\|chr4 (49841895-49841764)
	681-812, gnl\|Hg17\|chr7 (128400568-128400699)
	681-812, gnl\|Mm7\|chr6 (29648849-29648980)

	970-1509, gnl\|bosTau2\|chr4 (49841019-49840498)
	970-1509, gnl\|Hg17\|chr7 (128401561-128402103)
	970-1509, gnl\|Mm7\|chr6 (29649679-29650211)

	1520-2049, gnl\|bosTau2\|chr4 (49840515-49839987)
	1520-2049, gnl\|Hg17\|chr7 (128402058-128402626)
	1520-2049, gnl\|Mm7\|chr6 (29650169-29650707)

	cga (0.558191)
	fce (0.543183)
	mcp (0.341297)
	hyp (0.285673)
	fli (0.202881)
	fcc (0.197785)
	cje (0.165235)
	cag (0.151194)
	nca (0.136874)
	cov (0.132153)
	cly (0.120642)
	nbm (0.0993246)
	eje (0.0988338)