Non-Coding RNA Search

Ss1.1-Pig4-TMW8031G23.5

Sequence:


               
               ATGAAATGGTGAAATCAACTAAAGGAAGTATGTTTATAACAGTGTTTATTAATATCAGGA
GCTTTGTCCTGGAGAAAAAAGGGGAGCTAATGGCTACTTTTGTGAATGGATAACGTCACT
TAAAGAGCTGAATTTTCTGTTGACGTGAGTGGTTACCCGGAGTATTAGATCTGTATGCTG
ATGAGTGTCTCCTGATTCCACTTCCTTTTCTCCTTGTGAACAGTTATTGGTGCCATGTTG
AAAAGAAAGACATCTAAATGATACCATGAATGAAGTCTTAAATGTTTTTACTTCTCTATA
AAGACTACATTGTGCATCTTTAGTAACACTGTCTCTTGTCATGATAAGCACTGAAATAGC
ATGTTAAACAGTTGCCTATACTTTAATATAATCAGTTGGGGAAAACCGGCCTTTCCCCCC
CACTGTATGATTGTTCCTCTAAAGGTAAATTACTAATTTTATATTGTGTAATTCTCTTCT
TCACAAAATAGGTTTCACTATTCTATATTAAAACTATTGGTCAGGAAATGATCTTCTATT
CAAGTAAGTTTGCTTTACTTTTTTTTAAAAAACGTTTTAACATGCCTTATTTATTATTCT
TATACTAACAAGTTAGGAGCTAAGACAGATGAAATTTTCATTTTTTGACAGATATAACCT
TGCATAACTAAACTTTAGTGTGGGATGATTTTGATACTATCTTTGGAGTTTTGCACTGGA
CATTAAAAAAAATACTAGCTCAGTTTATTGGGAAAAATCTGATTAATTTTTAATATTTGG
GGTGCTTTAAAAATCAGGGTTTCAGTTAAACTAAAAAATTCTTTATATTTTTTATTTACT
TTTTAAAAATATCTGTTAAAGTAGTAAAAGTGATACTCATTCCAAACTGATGTTTGTGTG
AATTTACATGTATACTTTCATGAAATAAGAACAGCATTTCTTTGAATTAAGGAGGAAGAA
AAATGATTTGGATCCATTTATTAAGTTAAAGATGATTCATCCAGTATAAGAAAAACCAGT
GTATGAACTAAAGGAAAAAACCCAATTTCTCTTTTATATTCTAAGAAGCTTTAAAAGAAC
AATTCAGGGGATGTTGACAATAACTGCTACTCTGTCAGTCATTGTCTATATATGCAGTAA
AATTTTATGGTCCCTTTATAGTAAAATGTAAGAATTCATAACAGTTCTTCAAAACGTCTT
TTCCCTTAGACATAAGATTTTTTGATGCTATAATGTTTTGTTTTTATTACAGCTTAATTA
TATGCTGTTAAACTCTAGGATGTATCTAAATCTTCCTTTGCTCTTTGCCCTTCTTACCTC
CAAGTAGATAAATCTGTGCTCTCACATACTATGTATTTAATTTTTTGGAAAATTTACTGC
TATAGTAAATCAAGTGTGTGATTTATAGTAATCCGACCACTTTTGATTCTTTAAGTTTCA
CAGTTTCCTTTTTCCACAGATAATTATGGAGAAAATAATTACCAATTAACTGATACAAGC
ACGCTGTCCTCTGCTGTAAAAAGTCTGAATAGATACTGTGTATGTTTTTATGTCCATGAA
CTTGAGCTACTCGTGTGCAATTATGTGTATGGGAATGGAGTAGTGTTCATGATTTGTATC
TACATCATCATATGGATGTATATTTATTAATAAAGTCATTACTTTAAAACCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGAAATGGTGAAATCAACTAAAGGAAGTATGTTTATAACAGTGTTTATTAATATCAGGA
GCTTTGTCCTGGAGAAAAAAGGGGAGCTAATGGCTACTTTTGTGAATGGATAACGTCACT
TAAAGAGCTGAATTTTCTGTTGACGTGAGTGGTTACCCGGAGTATTAGATCTGTATGCTG
ATGAGTGTCTCCTGATTCCACTTCCTTTTCTCCTTGTGAACAGTTATTGGTGCCATGTTG
AAAAGAAAGACATCTAAATGATACCATGAATGAAGTCTTAAATGTTTTTACTTCTCTATA
AAGACTACATTGTGCATCTTTAGTAACACTGTCTCTTGTCATGATAAGCACTGAAATAGC
ATGTTAAACAGTTGCCTATACTTTAATATAATCAGTTGGGGAAAACCGGCCTTTCCCCCC
CACTGTATGATTGTTCCTCTAAAGGTAAATTACTAATTTTATATTGTGTAATTCTCTTCT
TCACAAAATAGGTTTCACTATTCTATATTAAAACTATTGGTCAGGAAATGATCTTCTATT
CAAGTAAGTTTGCTTTACTTTTTTTTAAAAAACGTTTTAACATGCCTTATTTATTATTCT
TATACTAACAAGTTAGGAGCTAAGACAGATGAAATTTTCATTTTTTGACAGATATAACCT
TGCATAACTAAACTTTAGTGTGGGATGATTTTGATACTATCTTTGGAGTTTTGCACTGGA
CATTAAAAAAAATACTAGCTCAGTTTATTGGGAAAAATCTGATTAATTTTTAATATTTGG
GGTGCTTTAAAAATCAGGGTTTCAGTTAAACTAAAAAATTCTTTATATTTTTTATTTACT
TTTTAAAAATATCTGTTAAAGTAGTAAAAGTGATACTCATTCCAAACTGATGTTTGTGTG
AATTTACATGTATACTTTCATGAAATAAGAACAGCATTTCTTTGAATTAAGGAGGAAGAA
AAATGATTTGGATCCATTTATTAAGTTAAAGATGATTCATCCAGTATAAGAAAAACCAGT
GTATGAACTAAAGGAAAAAACCCAATTTCTCTTTTATATTCTAAGAAGCTTTAAAAGAAC
AATTCAGGGGATGTTGACAATAACTGCTACTCTGTCAGTCATTGTCTATATATGCAGTAA
AATTTTATGGTCCCTTTATAGTAAAATGTAAGAATTCATAACAGTTCTTCAAAACGTCTT
TTCCCTTAGACATAAGATTTTTTGATGCTATAATGTTTTGTTTTTATTACAGCTTAATTA
TATGCTGTTAAACTCTAGGATGTATCTAAATCTTCCTTTGCTCTTTGCCCTTCTTACCTC
CAAGTAGATAAATCTGTGCTCTCACATACTATGTATTTAATTTTTTGGAAAATTTACTGC
TATAGTAAATCAAGTGTGTGATTTATAGTAATCCGACCACTTTTGATTCTTTAAGTTTCA
CAGTTTCCTTTTTCCACAGATAATTATGGAGAAAATAATTACCAATTAACTGATACAAGC
ACGCTGTCCTCTGCTGTAAAAAGTCTGAATAGATACTGTGTATGTTTTTATGTCCATGAA
CTTGAGCTACTCGTGTGCAATTATGTGTATGGGAATGGAGTAGTGTTCATGATTTGTATC
TACATCATCATATGGATGTATATTTATTAATAAAGTCATTACTTTAAAACCAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1510-1673, - strand, RNAz p=0.763163

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1510-1673, - strand, RNAz p=0.763163

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               102-1673, gnl|bosTau2|chr7 (32293678-32292094)
               

               
               102-1673, gnl|Hg17|chr5 (134221744-134223325)
               

               
               102-1673, gnl|Mm7|chr13 (54789889-54791412)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-1673, gnl|bosTau2|chr7 (32293678-32292094)
               

               
               102-1673, gnl|Hg17|chr5 (134221744-134223325)
               

               
               102-1673, gnl|Mm7|chr13 (54789889-54791412)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

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               ret (0.643666)
               

               
               kid (0.518941)
               

               
               bfe (0.449573)
               

               
               lin (0.436808)
               

               
               aor (0.390549)
               

               
               fhi (0.339155)
               

               
               pla (0.267344)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.643666)
               

               
               kid (0.518941)
               

               
               bfe (0.449573)
               

               
               lin (0.436808)
               

               
               aor (0.390549)
               

               
               fhi (0.339155)
               

               
               pla (0.267344)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	102-1673, gnl\|bosTau2\|chr7 (32293678-32292094)
	102-1673, gnl\|Hg17\|chr5 (134221744-134223325)
	102-1673, gnl\|Mm7\|chr13 (54789889-54791412)

	ret (0.643666)
	kid (0.518941)
	bfe (0.449573)
	lin (0.436808)
	aor (0.390549)
	fhi (0.339155)
	pla (0.267344)
	tra (0.246184)
	mgp (0.230681)
	fcc (0.197785)
	sag (0.182715)
	sin (0.174948)
	fco (0.157208)
	fat (0.147427)
	spl (0.143184)
	hyp (0.142837)
	lnt (0.142308)
	nca (0.136874)
	ste (0.135208)
	thg (0.126791)
	ese (0.126502)
	cly (0.120642)
	cty (0.10408)
	ldo (0.0970026)