Ss1.1-Pig4-TMW8031H10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACTAGAAAGATTCGAGAAATCTTCCATAACGTGGGAATCCACAGCGTGACCATCCAGTT GGAGAAGGTGGACCTGAAGGAGGCCCTGGAGCACAAGGACCTGCAGGTGCTCTGCAGCTC GCCCTGCATCTCCAAGGGCTGTGCCAAGCAGCTGTGCTGTCCCCCAGGGGCACTGGCACT GGCCCACGTCAACGGCTGCGCAGAGCACAACGGCGGTCCCCCACTGGACATGGTGCCCGT GGATGGCCTCGGTCGACGAGAAACAGCAGACGTGGCTGTTGAAGTACCTTTGGGAGGTTG TCTAAGTGGCTATGGACAAGCTCTTAGCAAAACTCAGGAGAACTCGCATTGCGTCAACAG CACGCATTTTTAATCTGGTGCCTGCACAAGTAAGACTGTAGAGATAAGGCACTTTGGAAC CACTAGCCTGGCTTGTGGCACGAGCTTTGTGGGTTGTGGGCACCAATCAGCCCTGAGTGT GCAAGCTCCGTGTTCACTAAGGGGTTGGCTCTTGGGGGTGGCGGTTGATTGCTGTGTGGC TGAGAACCCTTCACACCATCCTGGGTGTTTCACGGCGCTCTCCAGCCCTTCCGTTTGAAC ACCTATTTTCTGAAGTACATGCACTAGGTCGCCCCATCAGGGACGTCGAAGGCCGTGGGA CTCAATGGCTGTGGGCACAGGATTCACAGTAGTTTGTTTTTCAAATTGATTCGACCTTCT AGCTGACTCTCAGGTGAGGTCATACCAAGTACGCGGAACACCCTTCCGAACCATGATAGA ATAGCTCGAACTGTAATTCTTTCTAGCAGACTTCTTTTCCATTCTGCTAGAAGATCACAA AAAAGGAAAGTTAGGTGGTCCTGCAGAAAATTTTTTTCTTTGACTCATTTTTGAATAAAT GTAAAGTGCATACCTGGTAAAGTGGAACGCATTCTCTGAACATTAGAGGAAGTCGAGCTT GTTGGGGGTGGGGAAAGGCAGGAACAAAATGCATGCTGACCATGTCTTCATTGGGGGGGT TAGAGAGAAAAGCGCTTTCTGCTGTGAACTGAACTACAGTGATAGGATGTTTCAAATGTT TAAATATAGAAGATGGTTTTTTGTTTGTTTGTTTTTGTTTTAACCCCTTGGAAGCATGGG AACATTTCTACTTCTTAACGTGTGACACGGTCCTCTTTGAGAGTCGGTCCAGTTGGGATG GTTTTCATTTCTTGCTTATTAATGATTTGCCTACCTGCCTAAATTTCCGAGTCTTCTTTT ATATGATCACATTCATCTATGCAGCATTTACCAGGAGTAAATGAGTATTCCTGGGATAGA AAAACATATGGCATTGAAGATGCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACTAGAAAGATTCGAGAAATCTTCCATAACGTGGGAATCCACAGCGTGACCATCCAGTT GGAGAAGGTGGACCTGAAGGAGGCCCTGGAGCACAAGGACCTGCAGGTGCTCTGCAGCTC GCCCTGCATCTCCAAGGGCTGTGCCAAGCAGCTGTGCTGTCCCCCAGGGGCACTGGCACT GGCCCACGTCAACGGCTGCGCAGAGCACAACGGCGGTCCCCCACTGGACATGGTGCCCGT GGATGGCCTCGGTCGACGAGAAACAGCAGACGTGGCTGTTGAAGTACCTTTGGGAGGTTG TCTAAGTGGCTATGGACAAGCTCTTAGCAAAACTCAGGAGAACTCGCATTGCGTCAACAG CACGCATTTTTAATCTGGTGCCTGCACAAGTAAGACTGTAGAGATAAGGCACTTTGGAAC CACTAGCCTGGCTTGTGGCACGAGCTTTGTGGGTTGTGGGCACCAATCAGCCCTGAGTGT GCAAGCTCCGTGTTCACTAAGGGGTTGGCTCTTGGGGGTGGCGGTTGATTGCTGTGTGGC TGAGAACCCTTCACACCATCCTGGGTGTTTCACGGCGCTCTCCAGCCCTTCCGTTTGAAC ACCTATTTTCTGAAGTACATGCACTAGGTCGCCCCATCAGGGACGTCGAAGGCCGTGGGA CTCAATGGCTGTGGGCACAGGATTCACAGTAGTTTGTTTTTCAAATTGATTCGACCTTCT AGCTGACTCTCAGGTGAGGTCATACCAAGTACGCGGAACACCCTTCCGAACCATGATAGA ATAGCTCGAACTGTAATTCTTTCTAGCAGACTTCTTTTCCATTCTGCTAGAAGATCACAA AAAAGGAAAGTTAGGTGGTCCTGCAGAAAATTTTTTTCTTTGACTCATTTTTGAATAAAT GTAAAGTGCATACCTGGTAAAGTGGAACGCATTCTCTGAACATTAGAGGAAGTCGAGCTT GTTGGGGGTGGGGAAAGGCAGGAACAAAATGCATGCTGACCATGTCTTCATTGGGGGGGT TAGAGAGAAAAGCGCTTTCTGCTGTGAACTGAACTACAGTGATAGGATGTTTCAAATGTT TAAATATAGAAGATGGTTTTTTGTTTGTTTGTTTTTGTTTTAACCCCTTGGAAGCATGGG AACATTTCTACTTCTTAACGTGTGACACGGTCCTCTTTGAGAGTCGGTCCAGTTGGGATG GTTTTCATTTCTTGCTTATTAATGATTTGCCTACCTGCCTAAATTTCCGAGTCTTCTTTT ATATGATCACATTCATCTATGCAGCATTTACCAGGAGTAAATGAGTATTCCTGGGATAGA AAAACATATGGCATTGAAGATGCG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 5-779, gnl|bosTau2|chr16 (11606872-11607650) | |
| 5-779, gnl|Hg17|chr1 (216477554-216476762) | |
| 5-779, gnl|Mm7|chr1 (184989787-184990599) | |
| 812-1056, gnl|bosTau2|chr16 (11607656-11607908) | |
| 812-1056, gnl|canFam2|chr38 (17709230-17709492) | |
| 812-1056, gnl|dasNov1|scaffold_14390 (17443-17189) | |
| 812-1056, gnl|echTel1|scaffold_277687 (2775-2532) | |
| 812-1056, gnl|hg17|chr1 (216476527-216476769) | |
| 812-1056, gnl|Hg17|chr1 (216476756-216476526) | |
| 812-1056, gnl|loxAfr1|scaffold_49315 (12627-12886) | |
| 812-1056, gnl|mm7|chr1 (184990908-184990601) | |
| 812-1056, gnl|Mm7|chr1 (184990605-184990919) | |
| 812-1056, gnl|monDom2|scaffold_13 (26027869-26028156) | |
| 812-1056, gnl|panTro1|chr1 (200202793-200203035) | |
| 812-1056, gnl|rheMac2|chr1 (150471758-150471515) | |
| 812-1056, gnl|rn3|chr13 (101681362-101681070) | |
| 1115-1343, gnl|bosTau2|chr16 (11608547-11608788) | |
| 1115-1343, gnl|canFam2|chr38 (17708442-17709229) | |
| 1115-1343, gnl|dasNov1|scaffold_14390 (18156-17445) | |
| 1115-1343, gnl|echTel1|scaffold_277687 (3566-2776) | |
| 1115-1343, gnl|hg17|chr1 (216475737-216476526) | |
| 1115-1343, gnl|Hg17|chr1 (216476479-216476245) | |
| 1115-1343, gnl|loxAfr1|scaffold_49315 (11827-12626) | |
| 1115-1343, gnl|mm7|chr1 (184991609-184990909) | |
| 1115-1343, gnl|monDom2|scaffold_13 (26027077-26027868) | |
| 1115-1343, gnl|panTro1|chr1 (200201996-200202792) | |
| 1115-1343, gnl|rheMac2|chr1 (150472553-150471759) | |
| 1115-1343, gnl|rn3|chr13 (101682067-101681363) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-779, gnl|bosTau2|chr16 (11606872-11607650) | |
| 5-779, gnl|Hg17|chr1 (216477554-216476762) | |
| 5-779, gnl|Mm7|chr1 (184989787-184990599) | |
| 812-1056, gnl|bosTau2|chr16 (11607656-11607908) | |
| 812-1056, gnl|canFam2|chr38 (17709230-17709492) | |
| 812-1056, gnl|dasNov1|scaffold_14390 (17443-17189) | |
| 812-1056, gnl|echTel1|scaffold_277687 (2775-2532) | |
| 812-1056, gnl|hg17|chr1 (216476527-216476769) | |
| 812-1056, gnl|Hg17|chr1 (216476756-216476526) | |
| 812-1056, gnl|loxAfr1|scaffold_49315 (12627-12886) | |
| 812-1056, gnl|mm7|chr1 (184990908-184990601) | |
| 812-1056, gnl|Mm7|chr1 (184990605-184990919) | |
| 812-1056, gnl|monDom2|scaffold_13 (26027869-26028156) | |
| 812-1056, gnl|panTro1|chr1 (200202793-200203035) | |
| 812-1056, gnl|rheMac2|chr1 (150471758-150471515) | |
| 812-1056, gnl|rn3|chr13 (101681362-101681070) | |
| 1115-1343, gnl|bosTau2|chr16 (11608547-11608788) | |
| 1115-1343, gnl|canFam2|chr38 (17708442-17709229) | |
| 1115-1343, gnl|dasNov1|scaffold_14390 (18156-17445) | |
| 1115-1343, gnl|echTel1|scaffold_277687 (3566-2776) | |
| 1115-1343, gnl|hg17|chr1 (216475737-216476526) | |
| 1115-1343, gnl|Hg17|chr1 (216476479-216476245) | |
| 1115-1343, gnl|loxAfr1|scaffold_49315 (11827-12626) | |
| 1115-1343, gnl|mm7|chr1 (184991609-184990909) | |
| 1115-1343, gnl|monDom2|scaffold_13 (26027077-26027868) | |
| 1115-1343, gnl|panTro1|chr1 (200201996-200202792) | |
| 1115-1343, gnl|rheMac2|chr1 (150472553-150471759) | |
| 1115-1343, gnl|rn3|chr13 (101682067-101681363) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ece (0.229305) | |
| cje (0.165235) | |
| nco (0.161734) | |
| ecc (0.115035) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| cje (0.165235) | |
| nco (0.161734) | |
| ecc (0.115035) |