Ss1.1-Pig4-TMW8031H12.3
|
GCGCACCCCCGCAATTCAGTTTTGGCTACGGGCCTCCACCTCCCCCACCAGATCAGTTTG
CCCCTCCAGGGGTTCCCCCTCCACCGGCTACTCCAGGGGCAGCGCCTCTGGCCTTCCCAC
CACCTCCTTCTCAAGCCGCCCCGGACATGAGCAAACCACCGACAGCCCAGCCTGACTTCC
CATACAGTCAGTATGGTTACGGACAGGATCTGGCCGGCTTCGGACAGGGCTTCTCAGACC
CCAGCCAGCAGCCCCCCTCCTATGGGGGCCCCTCAGTGCCGGGCTCGGGGGGTCCCCCTG
CAGGCGGAAGTGGCTTTGGACGCGGTCAGAACCACAACGTACAAGGATTCCACCCCTACC
GACGCTAGCTGCCGGCGCCTAACAGACGTCAGGCAGCTGAGACCCAGGATTCAAACTTGT
GAACTCGTGACAATCACAAACTTGGCTGAAATATCAACTCGACCTTGGGGGGAGGGGGGG
ACGAGAAACTTTTGGAGGTGGCTGTGGGTGTCTGGACTGAAGTTTTTAAATATATTTCTT
TCTCTAACCCATCAGCACAATAAAAAAAAAGTCACTGGTTCAACAACAGGGTTTAAAAAA
AAGTCTTCAGCTTTAATTCAAATCTTCAGGTTTCTTTTCTTCCTTTTTTTTGAAATTATT
TTCCTGAGCCTTTTGTTTTACCGTATATTGTAAACTTTTATGTTAAAAGAAAAAAATATA
CATTTACAAATTGTGAGATTTTTAAGAGAAATTTTCTACGATGTATACTGGCTTATTTTT
TAATTTAAAACAGGGTTTCCGTCGGCACTGGTGGTGGTGAGGGGCAATTTTAGTCTCTCA
CTCCTGGCTTTGAGGGTTGGGACTTTTTGGTCCAGAAACTCTGGGAGCTGAAAGAAGAAA
TCTACTGAGTGTGTTTTGTTTTTTGTTTATTCCTTGGTTTTGTCAACTGGCGTGCCTGGC
AGTGTCTGCAGGTGCGCTGTGGGGCCGCACCCACCTGTGTCCGACCCAGCATCAAGGACC
AGGAGGCCTGGCCAGCTGATCTCCCACGCACGTGGCTTCAGGGCGTCCCCGCTGACCAGT
TTGAATAAAGAAAGTGCATTTGGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCGCACCCCCGCAATTCAGTTTTGGCTACGGGCCTCCACCTCCCCCACCAGATCAGTTTG
CCCCTCCAGGGGTTCCCCCTCCACCGGCTACTCCAGGGGCAGCGCCTCTGGCCTTCCCAC
CACCTCCTTCTCAAGCCGCCCCGGACATGAGCAAACCACCGACAGCCCAGCCTGACTTCC
CATACAGTCAGTATGGTTACGGACAGGATCTGGCCGGCTTCGGACAGGGCTTCTCAGACC
CCAGCCAGCAGCCCCCCTCCTATGGGGGCCCCTCAGTGCCGGGCTCGGGGGGTCCCCCTG
CAGGCGGAAGTGGCTTTGGACGCGGTCAGAACCACAACGTACAAGGATTCCACCCCTACC
GACGCTAGCTGCCGGCGCCTAACAGACGTCAGGCAGCTGAGACCCAGGATTCAAACTTGT
GAACTCGTGACAATCACAAACTTGGCTGAAATATCAACTCGACCTTGGGGGGAGGGGGGG
ACGAGAAACTTTTGGAGGTGGCTGTGGGTGTCTGGACTGAAGTTTTTAAATATATTTCTT
TCTCTAACCCATCAGCACAATAAAAAAAAAGTCACTGGTTCAACAACAGGGTTTAAAAAA
AAGTCTTCAGCTTTAATTCAAATCTTCAGGTTTCTTTTCTTCCTTTTTTTTGAAATTATT
TTCCTGAGCCTTTTGTTTTACCGTATATTGTAAACTTTTATGTTAAAAGAAAAAAATATA
CATTTACAAATTGTGAGATTTTTAAGAGAAATTTTCTACGATGTATACTGGCTTATTTTT
TAATTTAAAACAGGGTTTCCGTCGGCACTGGTGGTGGTGAGGGGCAATTTTAGTCTCTCA
CTCCTGGCTTTGAGGGTTGGGACTTTTTGGTCCAGAAACTCTGGGAGCTGAAAGAAGAAA
TCTACTGAGTGTGTTTTGTTTTTTGTTTATTCCTTGGTTTTGTCAACTGGCGTGCCTGGC
AGTGTCTGCAGGTGCGCTGTGGGGCCGCACCCACCTGTGTCCGACCCAGCATCAAGGACC
AGGAGGCCTGGCCAGCTGATCTCCCACGCACGTGGCTTCAGGGCGTCCCCGCTGACCAGT
TTGAATAAAGAAAGTGCATTTGGA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
19-197, gnl|bosTau2|chr7 (29049406-29049228) |
|
19-197, gnl|canFam2|chr20 (60554747-60554542) |
|
19-197, gnl|danRer3|chr11 (3864539-3864344) |
|
19-197, gnl|echTel1|scaffold_313265 (8817-8615) |
|
19-197, gnl|fr1|chrUn (88609870-88609658) |
|
19-197, gnl|galGal2|chrZ (18989089-18988880) |
|
19-197, gnl|hg17|chr19 (1383497-1383706) |
|
19-197, gnl|Hg17|chr19 (1383513-1383691) |
|
19-197, gnl|mm7|chr10 (80067527-80067727) |
|
19-197, gnl|Mm7|chr10 (80067541-80067719) |
|
19-197, gnl|monDom2|scaffold_75 (5792073-5791871) |
|
19-197, gnl|panTro1|chr20 (1459738-1459947) |
|
19-197, gnl|rheMac2|chr19 (1201283-1201492) |
|
19-197, gnl|rn3|chr7 (10938173-10937973) |
|
19-197, gnl|tetNig1|chr1 (14764325-14764506) |
|
19-197, gnl|xenTro1|scaffold_868 (87031-87248) |
| |
|
546-1006, gnl|bosTau2|chr14 (18848427-18848870) |
|
546-1006, gnl|Hg17|chr19 (1386097-1386535) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
19-197, gnl|bosTau2|chr7 (29049406-29049228) |
|
19-197, gnl|canFam2|chr20 (60554747-60554542) |
|
19-197, gnl|danRer3|chr11 (3864539-3864344) |
|
19-197, gnl|echTel1|scaffold_313265 (8817-8615) |
|
19-197, gnl|fr1|chrUn (88609870-88609658) |
|
19-197, gnl|galGal2|chrZ (18989089-18988880) |
|
19-197, gnl|hg17|chr19 (1383497-1383706) |
|
19-197, gnl|Hg17|chr19 (1383513-1383691) |
|
19-197, gnl|mm7|chr10 (80067527-80067727) |
|
19-197, gnl|Mm7|chr10 (80067541-80067719) |
|
19-197, gnl|monDom2|scaffold_75 (5792073-5791871) |
|
19-197, gnl|panTro1|chr20 (1459738-1459947) |
|
19-197, gnl|rheMac2|chr19 (1201283-1201492) |
|
19-197, gnl|rn3|chr7 (10938173-10937973) |
|
19-197, gnl|tetNig1|chr1 (14764325-14764506) |
|
19-197, gnl|xenTro1|scaffold_868 (87031-87248) |
| |
|
546-1006, gnl|bosTau2|chr14 (18848427-18848870) |
|
546-1006, gnl|Hg17|chr19 (1386097-1386535) |
|
tes (0.415628) |
|
che (0.272628) |
|
fce (0.271592) |
|
cly (0.241284) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
duo (0.172801) |
|
cki (0.165235) |
|
cje (0.165235) |
|
nco (0.161734) |
|
csp (0.161186) |
|
cag (0.151194) |
|
fat (0.147427) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
ova (0.129132) |
|
cbr (0.127975) |
|
clu (0.119646) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
tes (0.415628) |
|
che (0.272628) |
|
fce (0.271592) |
|
cly (0.241284) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
duo (0.172801) |
|
cki (0.165235) |
|
cje (0.165235) |
|
nco (0.161734) |
|
csp (0.161186) |
|
cag (0.151194) |
|
fat (0.147427) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
ova (0.129132) |
|
cbr (0.127975) |
|
clu (0.119646) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
