Ss1.1-Pig4-TMW8031I02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TACCACCAGCAGGGAGAGGGCCAAGAGGAACCACCCCTGAATCCCCATGGTGCAGCCCGC GCTGAGGTCTATCTCCGGAAGTGCACCTTTGACATGTTCAACTTCCTGGCCTCCCAACAC CGGGTGCTCCCTGAGGGAGCCGCCTGTGATGAGGAAGAGGATGAGGTGCAGCTCAGGTCA ACCAGACGCGCCACCAGTCTGGAGCTGCCCATGGCCATGCGCTTTCGCCACCTCAAGAAG ACATCCAAAGAGGCTGTAGGTGTCTACAGATCTGCCATCCATGGGCGGGGCCTGTTCTGT AAACGCAACATCGATGCCGGCGAGATGGTCATTGAGTACTCTGGTATTGTCATTCGCTCT GTGCTGACTGACAAGCGGGAGAAGTTCTATGACGGGAAGGGCATTGGGTGCTACATGTTC CGCATGGATGACTTTGACGTGGTGGATGCCACCATGCATGGCAATGCTGCCCGCTTCATC AACCACTCGTGTGAGCCCAACTGCTTCTCTCGAGTCATCCACGTGGAGGGCCAGAAGCAC ATCGTCATCTTTGCCCTGCGCCGCATCCTGCGTGGGGAGGAGCTCACCTATGACTACAAG TTCCCCATTGAGGATGCCAGCAACAAGCTGCCCTGCAACTGTGGCGCCAAGCGCTGCCGT CGGTTCCTTAACTGAAGCCTTGGCTGCCTGCCGCGCCCCCCCGCTGCCATCTTGCCCCTA GCCTGGGGGCTCTCTCGTCCCTCCCAAAGCATCTCACCCCCACCCTCATGTTCAGGGTGG TTGTGGGCATGCAGGTGGCAAGGGCCCTGCCTCCAGCCCACCCAGCAATCGCCCCCTTCT TGCCCTGGGGGCCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTTCTAT GCACTTTTTTATTTAAGAGGGTGGGATCCCAGGTGGGAACCCCCCACAATAAAGTCTGTC CAATGTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TACCACCAGCAGGGAGAGGGCCAAGAGGAACCACCCCTGAATCCCCATGGTGCAGCCCGC GCTGAGGTCTATCTCCGGAAGTGCACCTTTGACATGTTCAACTTCCTGGCCTCCCAACAC CGGGTGCTCCCTGAGGGAGCCGCCTGTGATGAGGAAGAGGATGAGGTGCAGCTCAGGTCA ACCAGACGCGCCACCAGTCTGGAGCTGCCCATGGCCATGCGCTTTCGCCACCTCAAGAAG ACATCCAAAGAGGCTGTAGGTGTCTACAGATCTGCCATCCATGGGCGGGGCCTGTTCTGT AAACGCAACATCGATGCCGGCGAGATGGTCATTGAGTACTCTGGTATTGTCATTCGCTCT GTGCTGACTGACAAGCGGGAGAAGTTCTATGACGGGAAGGGCATTGGGTGCTACATGTTC CGCATGGATGACTTTGACGTGGTGGATGCCACCATGCATGGCAATGCTGCCCGCTTCATC AACCACTCGTGTGAGCCCAACTGCTTCTCTCGAGTCATCCACGTGGAGGGCCAGAAGCAC ATCGTCATCTTTGCCCTGCGCCGCATCCTGCGTGGGGAGGAGCTCACCTATGACTACAAG TTCCCCATTGAGGATGCCAGCAACAAGCTGCCCTGCAACTGTGGCGCCAAGCGCTGCCGT CGGTTCCTTAACTGAAGCCTTGGCTGCCTGCCGCGCCCCCCCGCTGCCATCTTGCCCCTA GCCTGGGGGCTCTCTCGTCCCTCCCAAAGCATCTCACCCCCACCCTCATGTTCAGGGTGG TTGTGGGCATGCAGGTGGCAAGGGCCCTGCCTCCAGCCCACCCAGCAATCGCCCCCTTCT TGCCCTGGGGGCCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTTCTAT GCACTTTTTTATTTAAGAGGGTGGGATCCCAGGTGGGAACCCCCCACAATAAAGTCTGTC CAATGTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 79-934, - strand, RNAz p=0.925596 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 79-934, - strand, RNAz p=0.925596 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 79-185, gnl|bosTau2|chr18 (36885783-36885889) | |
| 79-185, gnl|canFam2|chr1 (119804439-119804287) | |
| 79-185, gnl|danRer3|chr16 (16255605-16255735) | |
| 79-185, gnl|dasNov1|scaffold_75974 (4114-3962) | |
| 79-185, gnl|echTel1|scaffold_320983 (81730-81861) | |
| 79-185, gnl|fr1|chrUn (124432128-124432262) | |
| 79-185, gnl|galGal2|chr24 (4228165-4228000) | |
| 79-185, gnl|hg17|chr19 (40920370-40920522) | |
| 79-185, gnl|Hg17|chr19 (40920378-40920484) | |
| 79-185, gnl|loxAfr1|scaffold_91506 (8047-8165) | |
| 79-185, gnl|mm7|chr7 (27511277-27511126) | |
| 79-185, gnl|Mm7|chr7 (27511267-27511161) | |
| 79-185, gnl|monDom2|scaffold_139 (1884515-1884659) | |
| 79-185, gnl|oryCun1|scaffold_192336 (24466-24619) | |
| 79-185, gnl|panTro1|chr20 (37752417-37752569) | |
| 79-185, gnl|rheMac2|chr19 (42219605-42219757) | |
| 79-185, gnl|rn3|chr1 (85693163-85693015) | |
| 79-185, gnl|tetNig1|chr8 (5993222-5993362) | |
| 79-185, gnl|xenTro1|scaffold_896 (375779-375634) | |
| 398-678, gnl|bosTau2|chr15 (15023419-15023139) | |
| 398-678, gnl|canFam2|chr5 (18224085-18223806) | |
| 398-678, gnl|danRer3|chr16 (16256209-16256488) | |
| 398-678, gnl|dasNov1|scaffold_18463 (6729-7008) | |
| 398-678, gnl|echTel1|scaffold_320983 (84598-84877) | |
| 398-678, gnl|fr1|chrUn (124432804-124433082) | |
| 398-678, gnl|galGal2|chr24 (4225928-4225638) | |
| 398-678, gnl|hg17|chr11 (117897820-117898099) | |
| 398-678, gnl|Hg17|chr11 (117897820-117898100) | |
| 398-678, gnl|loxAfr1|scaffold_123757 (5108-5387) | |
| 398-678, gnl|mm7|chr9 (44742526-44742247) | |
| 398-678, gnl|Mm7|chr9 (44742524-44742244) | |
| 398-678, gnl|monDom2|scaffold_2 (120158300-120158021) | |
| 398-678, gnl|oryCun1|scaffold_207575 (63127-63406) | |
| 398-678, gnl|panTro1|chr9 (119907491-119907770) | |
| 398-678, gnl|rheMac2|chr14 (116911723-116912002) | |
| 398-678, gnl|rn3|chr8 (47772804-47772525) | |
| 398-678, gnl|tetNig1|chr21_random (1738049-1738326) | |
| 398-678, gnl|xenTro1|scaffold_18 (417601-417318) | |
| 744-983, gnl|bosTau2|chr19 (21465740-21465980) | |
| 744-983, gnl|Hg17|chr19 (40921385-40921620) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 79-185, gnl|bosTau2|chr18 (36885783-36885889) | |
| 79-185, gnl|canFam2|chr1 (119804439-119804287) | |
| 79-185, gnl|danRer3|chr16 (16255605-16255735) | |
| 79-185, gnl|dasNov1|scaffold_75974 (4114-3962) | |
| 79-185, gnl|echTel1|scaffold_320983 (81730-81861) | |
| 79-185, gnl|fr1|chrUn (124432128-124432262) | |
| 79-185, gnl|galGal2|chr24 (4228165-4228000) | |
| 79-185, gnl|hg17|chr19 (40920370-40920522) | |
| 79-185, gnl|Hg17|chr19 (40920378-40920484) | |
| 79-185, gnl|loxAfr1|scaffold_91506 (8047-8165) | |
| 79-185, gnl|mm7|chr7 (27511277-27511126) | |
| 79-185, gnl|Mm7|chr7 (27511267-27511161) | |
| 79-185, gnl|monDom2|scaffold_139 (1884515-1884659) | |
| 79-185, gnl|oryCun1|scaffold_192336 (24466-24619) | |
| 79-185, gnl|panTro1|chr20 (37752417-37752569) | |
| 79-185, gnl|rheMac2|chr19 (42219605-42219757) | |
| 79-185, gnl|rn3|chr1 (85693163-85693015) | |
| 79-185, gnl|tetNig1|chr8 (5993222-5993362) | |
| 79-185, gnl|xenTro1|scaffold_896 (375779-375634) | |
| 398-678, gnl|bosTau2|chr15 (15023419-15023139) | |
| 398-678, gnl|canFam2|chr5 (18224085-18223806) | |
| 398-678, gnl|danRer3|chr16 (16256209-16256488) | |
| 398-678, gnl|dasNov1|scaffold_18463 (6729-7008) | |
| 398-678, gnl|echTel1|scaffold_320983 (84598-84877) | |
| 398-678, gnl|fr1|chrUn (124432804-124433082) | |
| 398-678, gnl|galGal2|chr24 (4225928-4225638) | |
| 398-678, gnl|hg17|chr11 (117897820-117898099) | |
| 398-678, gnl|Hg17|chr11 (117897820-117898100) | |
| 398-678, gnl|loxAfr1|scaffold_123757 (5108-5387) | |
| 398-678, gnl|mm7|chr9 (44742526-44742247) | |
| 398-678, gnl|Mm7|chr9 (44742524-44742244) | |
| 398-678, gnl|monDom2|scaffold_2 (120158300-120158021) | |
| 398-678, gnl|oryCun1|scaffold_207575 (63127-63406) | |
| 398-678, gnl|panTro1|chr9 (119907491-119907770) | |
| 398-678, gnl|rheMac2|chr14 (116911723-116912002) | |
| 398-678, gnl|rn3|chr8 (47772804-47772525) | |
| 398-678, gnl|tetNig1|chr21_random (1738049-1738326) | |
| 398-678, gnl|xenTro1|scaffold_18 (417601-417318) | |
| 744-983, gnl|bosTau2|chr19 (21465740-21465980) | |
| 744-983, gnl|Hg17|chr19 (40921385-40921620) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| med (0.232504) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| lnt (0.142308) | |
| ebs (0.118301) | |
| nbm (0.0993246) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.232504) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| lnt (0.142308) | |
| ebs (0.118301) | |
| nbm (0.0993246) |