Ss1.1-Pig4-TMW8031I06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAATCGGTGCAGGAACTCATCAAGATGATCTTTGATGTGGAAAGTATGAAGAAAGCCAT GGTGGAGTACGAGATTGACCTTCAGAAGATGCCGTTGGGGAAGCTGAGCAAAAGGCAGAT CCAGGCCGCGTACGCCATCCTCAGTGAGGTCCAGCAGGCCGTGTCCCAGGGCAGCAGCGA CTCCCAGATCCTGGATCTCTCAAATCGATTCTACACCTTGATCCCCCATGACTTTGGGAT GAAGAAGCCTCCACTGCTGAACAATGCGGACAGCGTGCAGGCCAAGGTGGAAATGCTAGA CAACCTATTGGACATCGAGGTGGCCTACAGTCTGCTCAGGGGTGGTTCTGATGACAGCAG CAAGGACCCCATTGATGTCAACTATGAGAAGCTCAAAACTGATATTAAGGTGGTGGACAG GGATTCTGAAGAAGCCGAGACCATCAGGAAGTACGTTAAGAACACTCACGCAACCACACA CAATGCATATGACTTGGAAGTTATCGATATCTTTAAGATCGAGCGTGAAGGGGAGAGTCA GCGTTACAAGCCATTTAAACAGCTGCATAACCGGAGGTTGCTGTGGCACGGGTCCAGGAC CACCAACTTCGCCGGGATCTTGTCCCAGGGTCTCCGGATAGCCCCACCTGAAGCACCTGT GACGGGCTACATGTTTGGGAAGGGGATCTATTTCGCCGACATGGTCTCCAAGAGTGCCAA CTACTGCCACACGTCCCAGGGAGACCCCATAGGCTTGATCCTGTTGGGAGAAGTTGCCCT TGGAAACATGTATGAGCTGAAGCACGCTTCGCACATCAGCAAGTTACCCAAGGGCAAGCA CAGTGTCAAAGGCTTAGGCAAAACGACCCCTGACCCCGCAGCCAGTATTACTATGGATGG TGTGGAGGTTCCTCTTGGGACCGGGATCCCATCTGGTGTGAACGATACCTGTCTGCTGTA TAACGAGTACATTGTCTACGATATCGCTCAGGTCAATCTCAAGTATCTACTGAAGCTGAA ATTCAACTTTAAGACGTCCCTGTGGTGAGCTGTGAACCGCAGCCCCAGGATCGTGGGGTG TCACCCCACGTGCTGTGCACCAACCAACCAGGCAGAAACCTCGGCCAAGTTGCCGAGGGA TGGTACCTTCACTGAATCTCCTTAGAAAGGATTTACATGAACACTTGGTCACATGTTAGT GATTTTCCCAACTTCTCCAATCCGTTGTTTGTGTTGGTCGGGGTGGGGGGCGGTCGTTTG GGGCTTCTTTCCTGCCAGCCATAACCCTGGTAGGTACAACTGACAATAGGGGAAACGTTG GGGAGGGTTTTGTTTTTGTTTTTGTTTTTGTTTTGCGTCTAGACTAGTCCAGCGAAAGAA CCTTGCAAGCCACCTTATAACGTCTGCCTTACTGGTTTCCCCAGGGAAGGAAAAAAATAA TCTTCCACCCTTATTTCTAAGTGTTCATCTTTAGTTTTGGAAAAACGTTAAGCATTTATT TTAAGGTCAAAATAAAAACTAATTTCATACTAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAATCGGTGCAGGAACTCATCAAGATGATCTTTGATGTGGAAAGTATGAAGAAAGCCAT GGTGGAGTACGAGATTGACCTTCAGAAGATGCCGTTGGGGAAGCTGAGCAAAAGGCAGAT CCAGGCCGCGTACGCCATCCTCAGTGAGGTCCAGCAGGCCGTGTCCCAGGGCAGCAGCGA CTCCCAGATCCTGGATCTCTCAAATCGATTCTACACCTTGATCCCCCATGACTTTGGGAT GAAGAAGCCTCCACTGCTGAACAATGCGGACAGCGTGCAGGCCAAGGTGGAAATGCTAGA CAACCTATTGGACATCGAGGTGGCCTACAGTCTGCTCAGGGGTGGTTCTGATGACAGCAG CAAGGACCCCATTGATGTCAACTATGAGAAGCTCAAAACTGATATTAAGGTGGTGGACAG GGATTCTGAAGAAGCCGAGACCATCAGGAAGTACGTTAAGAACACTCACGCAACCACACA CAATGCATATGACTTGGAAGTTATCGATATCTTTAAGATCGAGCGTGAAGGGGAGAGTCA GCGTTACAAGCCATTTAAACAGCTGCATAACCGGAGGTTGCTGTGGCACGGGTCCAGGAC CACCAACTTCGCCGGGATCTTGTCCCAGGGTCTCCGGATAGCCCCACCTGAAGCACCTGT GACGGGCTACATGTTTGGGAAGGGGATCTATTTCGCCGACATGGTCTCCAAGAGTGCCAA CTACTGCCACACGTCCCAGGGAGACCCCATAGGCTTGATCCTGTTGGGAGAAGTTGCCCT TGGAAACATGTATGAGCTGAAGCACGCTTCGCACATCAGCAAGTTACCCAAGGGCAAGCA CAGTGTCAAAGGCTTAGGCAAAACGACCCCTGACCCCGCAGCCAGTATTACTATGGATGG TGTGGAGGTTCCTCTTGGGACCGGGATCCCATCTGGTGTGAACGATACCTGTCTGCTGTA TAACGAGTACATTGTCTACGATATCGCTCAGGTCAATCTCAAGTATCTACTGAAGCTGAA ATTCAACTTTAAGACGTCCCTGTGGTGAGCTGTGAACCGCAGCCCCAGGATCGTGGGGTG TCACCCCACGTGCTGTGCACCAACCAACCAGGCAGAAACCTCGGCCAAGTTGCCGAGGGA TGGTACCTTCACTGAATCTCCTTAGAAAGGATTTACATGAACACTTGGTCACATGTTAGT GATTTTCCCAACTTCTCCAATCCGTTGTTTGTGTTGGTCGGGGTGGGGGGCGGTCGTTTG GGGCTTCTTTCCTGCCAGCCATAACCCTGGTAGGTACAACTGACAATAGGGGAAACGTTG GGGAGGGTTTTGTTTTTGTTTTTGTTTTTGTTTTGCGTCTAGACTAGTCCAGCGAAAGAA CCTTGCAAGCCACCTTATAACGTCTGCCTTACTGGTTTCCCCAGGGAAGGAAAAAAATAA TCTTCCACCCTTATTTCTAAGTGTTCATCTTTAGTTTTGGAAAAACGTTAAGCATTTATT TTAAGGTCAAAATAAAAACTAATTTCATACTAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 544-661, - strand, RNAz p=0.744767 | |
| 1227-1380, - strand, RNAz p=0.940707 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 544-661, - strand, RNAz p=0.744767 | |
| 1227-1380, - strand, RNAz p=0.940707 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 278-411, gnl|bosTau2|chr16 (17698131-17697998) | |
| 278-411, gnl|canFam2|chr7 (41508266-41508170) | |
| 278-411, gnl|danRer3|chr20 (51819937-51819841) | |
| 278-411, gnl|dasNov1|scaffold_17785 (12809-12722) | |
| 278-411, gnl|fr1|chrUn (53193882-53193793) | |
| 278-411, gnl|galGal2|chr3 (13390504-13390411) | |
| 278-411, gnl|hg17|chr1 (222861908-222862004) | |
| 278-411, gnl|Hg17|chr1 (222862047-222861914) | |
| 278-411, gnl|loxAfr1|scaffold_30616 (20365-20269) | |
| 278-411, gnl|mm7|chr1 (180574866-180574772) | |
| 278-411, gnl|Mm7|chr1 (180574727-180574860) | |
| 278-411, gnl|monDom2|scaffold_13 (34488182-34488277) | |
| 278-411, gnl|oryCun1|scaffold_203001 (5311-5215) | |
| 278-411, gnl|panTro1|chr1 (206680474-206680570) | |
| 278-411, gnl|rheMac2|chr1 (144003329-144003233) | |
| 278-411, gnl|rn3|chr13 (96524150-96524055) | |
| 278-411, gnl|tetNig1|chr14 (4917233-4917324) | |
| 278-411, gnl|xenTro1|scaffold_215 (1314471-1314380) | |
| 509-661, gnl|bosTau2|chr16 (17695953-17695801) | |
| 509-661, gnl|canFam2|chr7 (41510012-41509895) | |
| 509-661, gnl|danRer3|chr20 (51821937-51821820) | |
| 509-661, gnl|dasNov1|scaffold_93878 (4706-4823) | |
| 509-661, gnl|echTel1|scaffold_318614 (76791-76872) | |
| 509-661, gnl|fr1|chrUn (53194314-53194201) | |
| 509-661, gnl|galGal2|chr3 (13391768-13391653) | |
| 509-661, gnl|hg17|chr1 (222859429-222859546) | |
| 509-661, gnl|Hg17|chr1 (222859590-222859438) | |
| 509-661, gnl|loxAfr1|scaffold_30616 (21736-21619) | |
| 509-661, gnl|mm7|chr1 (180578449-180578332) | |
| 509-661, gnl|Mm7|chr1 (180578286-180578438) | |
| 509-661, gnl|monDom2|scaffold_13 (34485910-34486027) | |
| 509-661, gnl|oryCun1|scaffold_209514 (43300-43183) | |
| 509-661, gnl|panTro1|chr15 (62222185-62222113) | |
| 509-661, gnl|rheMac2|chr1 (144005753-144005636) | |
| 509-661, gnl|rn3|chr13 (96527642-96527525) | |
| 509-661, gnl|tetNig1|chr14 (4916802-4916919) | |
| 509-661, gnl|xenTro1|scaffold_215 (1315207-1315090) | |
| 967-1532, gnl|bosTau2|chr16 (17693010-17692468) | |
| 967-1532, gnl|Hg17|chr1 (222855977-222855439) | |
| 967-1532, gnl|Mm7|chr1 (180580525-180581075) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 278-411, gnl|bosTau2|chr16 (17698131-17697998) | |
| 278-411, gnl|canFam2|chr7 (41508266-41508170) | |
| 278-411, gnl|danRer3|chr20 (51819937-51819841) | |
| 278-411, gnl|dasNov1|scaffold_17785 (12809-12722) | |
| 278-411, gnl|fr1|chrUn (53193882-53193793) | |
| 278-411, gnl|galGal2|chr3 (13390504-13390411) | |
| 278-411, gnl|hg17|chr1 (222861908-222862004) | |
| 278-411, gnl|Hg17|chr1 (222862047-222861914) | |
| 278-411, gnl|loxAfr1|scaffold_30616 (20365-20269) | |
| 278-411, gnl|mm7|chr1 (180574866-180574772) | |
| 278-411, gnl|Mm7|chr1 (180574727-180574860) | |
| 278-411, gnl|monDom2|scaffold_13 (34488182-34488277) | |
| 278-411, gnl|oryCun1|scaffold_203001 (5311-5215) | |
| 278-411, gnl|panTro1|chr1 (206680474-206680570) | |
| 278-411, gnl|rheMac2|chr1 (144003329-144003233) | |
| 278-411, gnl|rn3|chr13 (96524150-96524055) | |
| 278-411, gnl|tetNig1|chr14 (4917233-4917324) | |
| 278-411, gnl|xenTro1|scaffold_215 (1314471-1314380) | |
| 509-661, gnl|bosTau2|chr16 (17695953-17695801) | |
| 509-661, gnl|canFam2|chr7 (41510012-41509895) | |
| 509-661, gnl|danRer3|chr20 (51821937-51821820) | |
| 509-661, gnl|dasNov1|scaffold_93878 (4706-4823) | |
| 509-661, gnl|echTel1|scaffold_318614 (76791-76872) | |
| 509-661, gnl|fr1|chrUn (53194314-53194201) | |
| 509-661, gnl|galGal2|chr3 (13391768-13391653) | |
| 509-661, gnl|hg17|chr1 (222859429-222859546) | |
| 509-661, gnl|Hg17|chr1 (222859590-222859438) | |
| 509-661, gnl|loxAfr1|scaffold_30616 (21736-21619) | |
| 509-661, gnl|mm7|chr1 (180578449-180578332) | |
| 509-661, gnl|Mm7|chr1 (180578286-180578438) | |
| 509-661, gnl|monDom2|scaffold_13 (34485910-34486027) | |
| 509-661, gnl|oryCun1|scaffold_209514 (43300-43183) | |
| 509-661, gnl|panTro1|chr15 (62222185-62222113) | |
| 509-661, gnl|rheMac2|chr1 (144005753-144005636) | |
| 509-661, gnl|rn3|chr13 (96527642-96527525) | |
| 509-661, gnl|tetNig1|chr14 (4916802-4916919) | |
| 509-661, gnl|xenTro1|scaffold_215 (1315207-1315090) | |
| 967-1532, gnl|bosTau2|chr16 (17693010-17692468) | |
| 967-1532, gnl|Hg17|chr1 (222855977-222855439) | |
| 967-1532, gnl|Mm7|chr1 (180580525-180581075) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| csp (0.322373) | |
| che (0.272628) | |
| ute (0.265569) | |
| eep (0.245128) | |
| ece (0.229305) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| cje (0.165235) | |
| cli (0.152812) | |
| spl (0.143184) | |
| cst (0.140036) | |
| thg (0.126791) | |
| ese (0.126502) | |
| med (0.116252) | |
| cbl (0.114797) | |
| nbm (0.0993246) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.322373) | |
| che (0.272628) | |
| ute (0.265569) | |
| eep (0.245128) | |
| ece (0.229305) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| cje (0.165235) | |
| cli (0.152812) | |
| spl (0.143184) | |
| cst (0.140036) | |
| thg (0.126791) | |
| ese (0.126502) | |
| med (0.116252) | |
| cbl (0.114797) | |
| nbm (0.0993246) |