Non-Coding RNA Search

Ss1.1-Pig4-TMW8031I09.5

Sequence:


               
               CAGGAACCAAGGATTGTGCATAGCTTCCAGATTACAGACACATAAGCTTCTCTCTTCCAG
CACCAGCTCTTGCTCTCTGTCCTGGGTGTCAGGAGAGCCCTCCTAGCAGTGGCTTCTCTA
GGTTCTAGGAGTGCAAGCCTCTGTGTGGATGTGTGTGCCTGTGTGTGTTCATGTGTGTCC
ACACTGGCCTGCCTCTTCTCCTTACCATGTTTGTACTACTTCACCTCGTGCAGTGGGACA
TACAACGGGAGCCCCAAGGCAGTACTGCCTGGCCTGATCTAAAGCTTTTAAACTCATTTT
TAGCCATTGGGTGTTGGTCAGGTCTCACTACAACCTGCCTGAGGCTGACTGGCTAGAGCC
TGCAGGTCCTATGACCCTTTCGGGCCAGGCCACGTCCTCTACGTCTGCCGAGCTTCTTGG
CCGAGTAGACAAAATGGGGTCAAGCCTGGGCATCTAACTCACCACCCTGTCATCCACCTC
ATGGCAAGGGCAAAAATGTAGCCTTGCGTCTTAAAGCCAGCGCCTCCGTCAGACCCCACT
GCAGTGTTCCAACAACACCCTCAGAAGTCAGGGCAACTTGTGGAGCATGGAGTTGAACTT
CCTTTTCTGTTAATCGCTACTCACGGGAACCCCTCTCAGGGCTGCAGCTTACAGCGAGGC
AGCTGTGCACTGCGCAACTCAAAGGGCCATTTGTCACAGCTGTTCAGTGAAAGTGGGTCC
CCTGGAATTGGGCAGTGTGGTGGCCCTGCGTCTCCTCACCTCCATCCCCATCTCCATGCC
CCTACTCTCTGGAAAGAAAAAGGAATTGGAAGTGTCTGGGTTCATTTTTCTCCTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAACCAAGGATTGTGCATAGCTTCCAGATTACAGACACATAAGCTTCTCTCTTCCAG
CACCAGCTCTTGCTCTCTGTCCTGGGTGTCAGGAGAGCCCTCCTAGCAGTGGCTTCTCTA
GGTTCTAGGAGTGCAAGCCTCTGTGTGGATGTGTGTGCCTGTGTGTGTTCATGTGTGTCC
ACACTGGCCTGCCTCTTCTCCTTACCATGTTTGTACTACTTCACCTCGTGCAGTGGGACA
TACAACGGGAGCCCCAAGGCAGTACTGCCTGGCCTGATCTAAAGCTTTTAAACTCATTTT
TAGCCATTGGGTGTTGGTCAGGTCTCACTACAACCTGCCTGAGGCTGACTGGCTAGAGCC
TGCAGGTCCTATGACCCTTTCGGGCCAGGCCACGTCCTCTACGTCTGCCGAGCTTCTTGG
CCGAGTAGACAAAATGGGGTCAAGCCTGGGCATCTAACTCACCACCCTGTCATCCACCTC
ATGGCAAGGGCAAAAATGTAGCCTTGCGTCTTAAAGCCAGCGCCTCCGTCAGACCCCACT
GCAGTGTTCCAACAACACCCTCAGAAGTCAGGGCAACTTGTGGAGCATGGAGTTGAACTT
CCTTTTCTGTTAATCGCTACTCACGGGAACCCCTCTCAGGGCTGCAGCTTACAGCGAGGC
AGCTGTGCACTGCGCAACTCAAAGGGCCATTTGTCACAGCTGTTCAGTGAAAGTGGGTCC
CCTGGAATTGGGCAGTGTGGTGGCCCTGCGTCTCCTCACCTCCATCCCCATCTCCATGCC
CCTACTCTCTGGAAAGAAAAAGGAATTGGAAGTGTCTGGGTTCATTTTTCTCCTTTTTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-840, gnl|bosTau2|chr26 (12925390-12924566)
               

               
               2-840, gnl|Hg17|chr10 (102298591-102299508)
               

               
               2-840, gnl|Mm7|chr19 (44465741-44466565)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-840, gnl|bosTau2|chr26 (12925390-12924566)
               

               
               2-840, gnl|Hg17|chr10 (102298591-102299508)
               

               
               2-840, gnl|Mm7|chr19 (44465741-44466565)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nbm (0.198649)
               

               
               ton (0.1755)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.198649)
               

               
               ton (0.1755)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               med (0.116252)

	2-840, gnl\|bosTau2\|chr26 (12925390-12924566)
	2-840, gnl\|Hg17\|chr10 (102298591-102299508)
	2-840, gnl\|Mm7\|chr19 (44465741-44466565)

	nbm (0.198649)
	ton (0.1755)
	hlv (0.139256)
	cov (0.132153)
	med (0.116252)