Ss1.1-Pig4-TMW8031I15.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAGCCCCCAAGCCCATGCCACCACGGCCCCCTCTGCCCAACCAGCAGTTCGGGGTCTCC TTGCAGCACCTCCGGGAGAAGAACCCAGACCAGGAGCCCATTCCACTTGTGCTGCGGGAG ACCGTTGCCTACCTGCAGGCCCACGCTCTCACCACCGAGGGGATTTTCCGGAGGTCAGCC AACACTCAAGTTGTACGGGAAGTGCAGCAGAAGTACAACATGGGGCTGCCTGTGGACTTT GACCAATACAATGAGTTGCACCTGCCAGCAGTCATTCTCAAGACCTTCCTCCGGGAGCTT CCTGAGCCCCTGCTCACCTTTGACCTCTACTCCCACGTTGTGGGCTTCCTCAGCATTGAT GAGAGCCAGAGAGTGCAGGCGACACTGCAGGTCTTCCAGACACTGCCTGAGGAGAACTAC CTGGTGCTGCGTTTCCTCACTGCCTTCCTGGTGCAGATTTCTGCCCTCTGTGACCAGAAC AAGATGACCAACACTAATCTGGCTGTCGTCTTCGGCCCCTAACCTGCTGTGGGCCAAGGA TGCTGCCATCACCCTCAAGGCCATCAATCCCATCAACACCTTCACCAAGTTCCTCCTGGA TCATCAAGGGGAGTTGTTTCCTAGCCCTGACGCCAAGGGGCTCTGAGCCCTGCCCCACCC GCTCCCTTCTCTGATCGCCCCAGTTTGGACTCTTCCTCCTGGCTTCAGCGGTACAGGAGC CCGGGGCTCCCCCAGAGATAGAAGCTGGAGTCAGCCAGCCAGACAGCTCCTACTCCCCAT CCTGTCTGGCCCCCTCACTGGCCCTGGAGGCCTCGCTGTAACCACAAGACGTTTTTCTTC GCCTTATACTTCTCACTGCCTCCTTGGACCCCCGACTCCTGCCGGGTTCTGCGGAGCTGG CTTGGCTCTTCATGCGGGAGGACTGGCCCCAGCAGCCGCTTACCTGCCTTCTCCTGCCTC TTTCCTTGGCAACTGGAGATGCCAAAATCACTGCCGGCTGGGCTGGTCCTCCCCTTCCTG ATTCTGGGAAATGAAAGGCTGAGGTGGCTTGGGCTGGCCTGGCTGAGGCTCCTCTCTGTC TGGGTGAAGGCCTGGTTGCAGGCACTCTGCTCCTGTCCTACCCCCGGTGGCTCAGCCTTT GGTACTTCTGCAGCTAGTGGACAACAGGCTGGAGTCAGCTTCCCGTGTCTGCCTTCTCTT CCACACATCCTGGGTCAGCCTTTCCCAAGTGGTACTGCTCCCAGGGTGTCCTAACCCCCT GGTTCTGCAAGGACTGGCAGCTTGGATGATGGGGCTGAGTCCCAGCATCCATTCGAAATA GACACCGCACTCCCACCCCTGCCAGCCCCCTAAGTGTGGTCAGACCAGTGACAAGCAGTC CCTGCCCTGCCCCCAAGCATTGCCGCCCCTCCCCATGACTTGGGCAGATCCTTAGCCATG TCAGTTGTGGAGTCACACAGGTCCCTGCTCTGGCCTGGGGTGACTCAGTGCCTCAGGATC TGTGGTGGCTCCTTAGTCCAGTTGTGAACCCCTGGAGGGACTGGGCAGAGACTCTGCTAG TTAGATCAGCCCCTGGTGGTAAGTTCTAGCAACTTCTTCCCGACTCTGATGATGATGGAT AGCCCTCTTTCCAGCTGTGTCCCTTCCTGGTGAACCCCATTGCCACAGAGCCTGTACCAT GGGGGTCCTCACTGACCAGCCCTGCCCCATTTGTGAACCAGGTGTGGCCTGGGCCTTGAC CTCACTGGGCTCTCTCCCCAGGGCACTAGCATGTCAGGATTTGGGGCCTGGCATGGCTGC TGGTTCCCCATCAGTCCCTTTGTCTCCAGTCCAGGCCCGGGCTTCTGCTTTCTGCCTTCC TTGGTATATCAGGTGTCACTCACAACCCCACTTACTGGGGAGCTTCGTGGATCTATTTGG TCTCTCCGCCCCTCCCCCCACTGGTCTTTACCCCGGGGTAGGGGGCTCATACTGTGAATC AAGTGTTCACATTCACACTTAGTGACTTCCTTGGCACCAATCATGTATTTCACCTTTGCA CTTTTTATATTTCAATAAAAAAGGAGTTCAAAACTAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAGCCCCCAAGCCCATGCCACCACGGCCCCCTCTGCCCAACCAGCAGTTCGGGGTCTCC TTGCAGCACCTCCGGGAGAAGAACCCAGACCAGGAGCCCATTCCACTTGTGCTGCGGGAG ACCGTTGCCTACCTGCAGGCCCACGCTCTCACCACCGAGGGGATTTTCCGGAGGTCAGCC AACACTCAAGTTGTACGGGAAGTGCAGCAGAAGTACAACATGGGGCTGCCTGTGGACTTT GACCAATACAATGAGTTGCACCTGCCAGCAGTCATTCTCAAGACCTTCCTCCGGGAGCTT CCTGAGCCCCTGCTCACCTTTGACCTCTACTCCCACGTTGTGGGCTTCCTCAGCATTGAT GAGAGCCAGAGAGTGCAGGCGACACTGCAGGTCTTCCAGACACTGCCTGAGGAGAACTAC CTGGTGCTGCGTTTCCTCACTGCCTTCCTGGTGCAGATTTCTGCCCTCTGTGACCAGAAC AAGATGACCAACACTAATCTGGCTGTCGTCTTCGGCCCCTAACCTGCTGTGGGCCAAGGA TGCTGCCATCACCCTCAAGGCCATCAATCCCATCAACACCTTCACCAAGTTCCTCCTGGA TCATCAAGGGGAGTTGTTTCCTAGCCCTGACGCCAAGGGGCTCTGAGCCCTGCCCCACCC GCTCCCTTCTCTGATCGCCCCAGTTTGGACTCTTCCTCCTGGCTTCAGCGGTACAGGAGC CCGGGGCTCCCCCAGAGATAGAAGCTGGAGTCAGCCAGCCAGACAGCTCCTACTCCCCAT CCTGTCTGGCCCCCTCACTGGCCCTGGAGGCCTCGCTGTAACCACAAGACGTTTTTCTTC GCCTTATACTTCTCACTGCCTCCTTGGACCCCCGACTCCTGCCGGGTTCTGCGGAGCTGG CTTGGCTCTTCATGCGGGAGGACTGGCCCCAGCAGCCGCTTACCTGCCTTCTCCTGCCTC TTTCCTTGGCAACTGGAGATGCCAAAATCACTGCCGGCTGGGCTGGTCCTCCCCTTCCTG ATTCTGGGAAATGAAAGGCTGAGGTGGCTTGGGCTGGCCTGGCTGAGGCTCCTCTCTGTC TGGGTGAAGGCCTGGTTGCAGGCACTCTGCTCCTGTCCTACCCCCGGTGGCTCAGCCTTT GGTACTTCTGCAGCTAGTGGACAACAGGCTGGAGTCAGCTTCCCGTGTCTGCCTTCTCTT CCACACATCCTGGGTCAGCCTTTCCCAAGTGGTACTGCTCCCAGGGTGTCCTAACCCCCT GGTTCTGCAAGGACTGGCAGCTTGGATGATGGGGCTGAGTCCCAGCATCCATTCGAAATA GACACCGCACTCCCACCCCTGCCAGCCCCCTAAGTGTGGTCAGACCAGTGACAAGCAGTC CCTGCCCTGCCCCCAAGCATTGCCGCCCCTCCCCATGACTTGGGCAGATCCTTAGCCATG TCAGTTGTGGAGTCACACAGGTCCCTGCTCTGGCCTGGGGTGACTCAGTGCCTCAGGATC TGTGGTGGCTCCTTAGTCCAGTTGTGAACCCCTGGAGGGACTGGGCAGAGACTCTGCTAG TTAGATCAGCCCCTGGTGGTAAGTTCTAGCAACTTCTTCCCGACTCTGATGATGATGGAT AGCCCTCTTTCCAGCTGTGTCCCTTCCTGGTGAACCCCATTGCCACAGAGCCTGTACCAT GGGGGTCCTCACTGACCAGCCCTGCCCCATTTGTGAACCAGGTGTGGCCTGGGCCTTGAC CTCACTGGGCTCTCTCCCCAGGGCACTAGCATGTCAGGATTTGGGGCCTGGCATGGCTGC TGGTTCCCCATCAGTCCCTTTGTCTCCAGTCCAGGCCCGGGCTTCTGCTTTCTGCCTTCC TTGGTATATCAGGTGTCACTCACAACCCCACTTACTGGGGAGCTTCGTGGATCTATTTGG TCTCTCCGCCCCTCCCCCCACTGGTCTTTACCCCGGGGTAGGGGGCTCATACTGTGAATC AAGTGTTCACATTCACACTTAGTGACTTCCTTGGCACCAATCATGTATTTCACCTTTGCA CTTTTTATATTTCAATAAAAAAGGAGTTCAAAACTAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 224-339, - strand, RNAz p=0.974095 | |
| 484-889, - strand, RNAz p=0.959426 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 224-339, - strand, RNAz p=0.974095 | |
| 484-889, - strand, RNAz p=0.959426 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 223-353, gnl|bosTau2|chr15 (48447021-48446891) | |
| 223-353, gnl|canFam2|chr18 (45863800-45863668) | |
| 223-353, gnl|danRer3|chr7 (28998266-28998176) | |
| 223-353, gnl|dasNov1|scaffold_31799 (10248-10146) | |
| 223-353, gnl|echTel1|scaffold_294207 (38336-38230) | |
| 223-353, gnl|fr1|chrUn (266810322-266810423) | |
| 223-353, gnl|galGal2|chr5 (20761729-20761604) | |
| 223-353, gnl|hg17|chr11 (46657750-46657854) | |
| 223-353, gnl|Hg17|chr11 (46657903-46657773) | |
| 223-353, gnl|loxAfr1|scaffold_80 (26000-25890) | |
| 223-353, gnl|mm7|chr2 (91521020-91520912) | |
| 223-353, gnl|Mm7|chr2 (91520861-91520991) | |
| 223-353, gnl|monDom2|scaffold_33 (12646863-12646972) | |
| 223-353, gnl|oryCun1|scaffold_210921 (61200-61085) | |
| 223-353, gnl|panTro1|chr9 (47176456-47176560) | |
| 223-353, gnl|rheMac2|chr14 (25441111-25441007) | |
| 223-353, gnl|rn3|chr3 (75947086-75946978) | |
| 223-353, gnl|tetNig1|chr3 (7319096-7319197) | |
| 223-353, gnl|xenTro1|scaffold_76 (2174543-2174644) | |
| 445-2075, gnl|bosTau2|chr15 (48446480-48444824) | |
| 445-2075, gnl|Hg17|chr11 (46657363-46655204) | |
| 445-2075, gnl|Mm7|chr2 (91521416-91523041) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 223-353, gnl|bosTau2|chr15 (48447021-48446891) | |
| 223-353, gnl|canFam2|chr18 (45863800-45863668) | |
| 223-353, gnl|danRer3|chr7 (28998266-28998176) | |
| 223-353, gnl|dasNov1|scaffold_31799 (10248-10146) | |
| 223-353, gnl|echTel1|scaffold_294207 (38336-38230) | |
| 223-353, gnl|fr1|chrUn (266810322-266810423) | |
| 223-353, gnl|galGal2|chr5 (20761729-20761604) | |
| 223-353, gnl|hg17|chr11 (46657750-46657854) | |
| 223-353, gnl|Hg17|chr11 (46657903-46657773) | |
| 223-353, gnl|loxAfr1|scaffold_80 (26000-25890) | |
| 223-353, gnl|mm7|chr2 (91521020-91520912) | |
| 223-353, gnl|Mm7|chr2 (91520861-91520991) | |
| 223-353, gnl|monDom2|scaffold_33 (12646863-12646972) | |
| 223-353, gnl|oryCun1|scaffold_210921 (61200-61085) | |
| 223-353, gnl|panTro1|chr9 (47176456-47176560) | |
| 223-353, gnl|rheMac2|chr14 (25441111-25441007) | |
| 223-353, gnl|rn3|chr3 (75947086-75946978) | |
| 223-353, gnl|tetNig1|chr3 (7319096-7319197) | |
| 223-353, gnl|xenTro1|scaffold_76 (2174543-2174644) | |
| 445-2075, gnl|bosTau2|chr15 (48446480-48444824) | |
| 445-2075, gnl|Hg17|chr11 (46657363-46655204) | |
| 445-2075, gnl|Mm7|chr2 (91521416-91523041) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| cov (0.396458) | |
| ese (0.379507) | |
| hyp (0.285673) | |
| cly (0.241284) | |
| nms (0.213858) | |
| col (0.195008) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| nbm (0.0993246) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| ese (0.379507) | |
| hyp (0.285673) | |
| cly (0.241284) | |
| nms (0.213858) | |
| col (0.195008) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| nbm (0.0993246) |