Non-Coding RNA Search

Ss1.1-Pig4-TMW8031I18.3

Sequence:


               
               GAAAAATATATATTGTCCATACTGTAAATAAGTGTATGCTTATTTATTTGGGGGGAAAAG
TATACATAAAGGACCTTTGTCCTAAAGCTCTCTCCCAGGCCACCTTGTTACTCATTGGAC
CCGGAGAGGCAGTCATTGTGAGGTCTACTGGATGAGGCCCATAGTTGAGACTTGTAGACA
TTTATTTATACTGTGTCATGTTTTATAATTTATACATAAAATGTCTGGTTGACTGTACAC
CTTGTTTTTGAAGAAATTTATTCGTGAAAGGAAGAGCAGTTGTTATTTATTGTGAGGTCT
CTTGCTTGTAAAGTAAAAGCTTTTTTTTTTCCTTGTAAACCATTTAAGTCCATTCCTTAT
TATTCACTCACTCATCTGTCTCCCTTCATTTCACTGTTAGACTCTTTTCCATTTTAACAA
ACTTGCATGTCAGTTTCTGTCATGTTTATTTATTGGATTCTCCGCTGCCTGTTCTGTACA
TATATGATCCCTCGGGTTTTGTTTACAAGGAATCTTGACTGACCAAAAGGCATTATAACT
GACTCAAATAGAAGGTACAGAGGATACATCTTGAGGAAACTCCTACTCTGTTCTCTTGTG
ATGAAGACATTTGTGAGAGAGGGGCTGATTGCATTTCTAGTAATGTACTTTTAAGATGTT
GCAGATCCAAAGATATGGGTGTCAGGGGCCTGAAGGAAGGGGATTGCTACACATTCAACC
TTTTGTTAGGTGTTTCCTTTAAGCTAGTCTGCTGTACCTTTTAAATTAGTTATTTTCACC
TAGCGTGTCATGAAAAACTATATCAAAGCTTTATCAGTTCAAGTTTCTTGCTTTTCATAA
CACTTTTTTCTGATGCAATTTTATATTTTCAAACATGGCAAGTTAAATATAAATTCATTT
AAATATATAGTTTTGTACTTTTCTACCATGTAAATGTGCAATGTATATAAAAGTTATAAT
GTGTATTTGTAAATAAATGATGAGTGAAAAAATAAAAAAATTTTAAAAAGCCAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAATATATATTGTCCATACTGTAAATAAGTGTATGCTTATTTATTTGGGGGGAAAAG
TATACATAAAGGACCTTTGTCCTAAAGCTCTCTCCCAGGCCACCTTGTTACTCATTGGAC
CCGGAGAGGCAGTCATTGTGAGGTCTACTGGATGAGGCCCATAGTTGAGACTTGTAGACA
TTTATTTATACTGTGTCATGTTTTATAATTTATACATAAAATGTCTGGTTGACTGTACAC
CTTGTTTTTGAAGAAATTTATTCGTGAAAGGAAGAGCAGTTGTTATTTATTGTGAGGTCT
CTTGCTTGTAAAGTAAAAGCTTTTTTTTTTCCTTGTAAACCATTTAAGTCCATTCCTTAT
TATTCACTCACTCATCTGTCTCCCTTCATTTCACTGTTAGACTCTTTTCCATTTTAACAA
ACTTGCATGTCAGTTTCTGTCATGTTTATTTATTGGATTCTCCGCTGCCTGTTCTGTACA
TATATGATCCCTCGGGTTTTGTTTACAAGGAATCTTGACTGACCAAAAGGCATTATAACT
GACTCAAATAGAAGGTACAGAGGATACATCTTGAGGAAACTCCTACTCTGTTCTCTTGTG
ATGAAGACATTTGTGAGAGAGGGGCTGATTGCATTTCTAGTAATGTACTTTTAAGATGTT
GCAGATCCAAAGATATGGGTGTCAGGGGCCTGAAGGAAGGGGATTGCTACACATTCAACC
TTTTGTTAGGTGTTTCCTTTAAGCTAGTCTGCTGTACCTTTTAAATTAGTTATTTTCACC
TAGCGTGTCATGAAAAACTATATCAAAGCTTTATCAGTTCAAGTTTCTTGCTTTTCATAA
CACTTTTTTCTGATGCAATTTTATATTTTCAAACATGGCAAGTTAAATATAAATTCATTT
AAATATATAGTTTTGTACTTTTCTACCATGTAAATGTGCAATGTATATAAAAGTTATAAT
GTGTATTTGTAAATAAATGATGAGTGAAAAAATAAAAAAATTTTAAAAAGCCAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               2-119, - strand, RNAz p=0.658739
               

               
               653-761, - strand, RNAz p=0.565743

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-119, - strand, RNAz p=0.658739
               

               
               653-761, - strand, RNAz p=0.565743

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1014, gnl|bosTau2|chr20 (13863136-13864177)
               

               
               2-1014, gnl|Hg17|chr5 (52817694-52818721)
               

               
               2-1014, gnl|Mm7|chr13 (111625744-111624699)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1014, gnl|bosTau2|chr20 (13863136-13864177)
               

               
               2-1014, gnl|Hg17|chr5 (52817694-52818721)
               

               
               2-1014, gnl|Mm7|chr13 (111625744-111624699)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ova (0.387397)
               

               
               sme (0.305437)
               

               
               fli (0.202881)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.387397)
               

               
               sme (0.305437)
               

               
               fli (0.202881)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	2-119, - strand, RNAz p=0.658739
	653-761, - strand, RNAz p=0.565743

	2-1014, gnl\|bosTau2\|chr20 (13863136-13864177)
	2-1014, gnl\|Hg17\|chr5 (52817694-52818721)
	2-1014, gnl\|Mm7\|chr13 (111625744-111624699)

	ova (0.387397)
	sme (0.305437)
	fli (0.202881)
	liv (0.146284)
	pty (0.142714)
	pla (0.133672)
	ese (0.126502)
	eru (0.120048)
	jca (0.11396)