Ss1.1-Pig4-TMW8031I22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTAATATGGAAAATAAAAGCATTTAATATCTCTTAAAGGGAGATTACACT GCTTGATCCCGGGCAGAGAGCTCACACTGCAGACCCGGGCCGACCCGCCTACGCCTCCGC GGCCGCAGGGCCCTGACCGGCCGGCCCTTCCTCTCCCTCCGCGGAGGGTGGGGTCTCGAT GGGGGAAGCGGGCGGCCCCCCTAGGCCAGGGCCTTGCGGAAGGTGCTCCAGGCGTGGAAG CAGCGGGTGAAGGCGTGCTGCTCGTTGCCCTTGCGCACGAGGCGCAGGCGGCGGGGACGC TCGTGCTCCTTGGAGCGCAGGTGCTGGATGTACACCTGGCAGGCCTTCAGACTCAGCTTG ATCTCCACCTGGCTCGTCTGGGTCCCCACCCACATGTAGACCTCTTGGCCGTTGTCTAAG AGCATGATGTCATCATCCGCCAGGTCATCCTGGCAAAAGTCTGAGCACTTCTCCGTCACC GCGAAGTAGCCCTTCTCGTTGGAGCACCGGAAGAGCCGCGTGTGCTTCATGTACTCTGCG TCGTCGTCGTAGGGCTTCTGTGCCCCGATGCCCACCCAGAAGAAGTTCTCCGGCTCCTCG CCCTCGTTGATGACCTGCTTGCTGTAGGAGGCCTCGAACATGCTGTTGAGAATGTCCTCG GCCAGCTTGGCCTCGTCCGGGTCTGACGCCCGGCCCACCCAGGCGTACACGATGCCCTGG TTGTCCTCGCTCTCGAAGGGAACCTTGAGGATGAAGCAGAACTCGGAGTTGAGGAGGCCG GAGTCGGTGTTGATCTGGATGCACCTGGTGCAGAGGGCGCTGCCGTTGGTGCGGATCTGG TACAGGCTGGGCTGCGGGGCGCCCTGGGCCGCCCTCCTCCGGCCCCGGTGGATGACGAAC TTCCTCTTGAAGTGGGACAGGAACTTGGGGTTCTCCTGCTGCTGCGTCATGCGCACCACC TCCAGCTTGCCGGGGAAGAGACTCTCGAACTTCTTCTGCAGGCTGAAGGTGAAGGTGAGC CAGCCCATGGTGGAGGCTTCGCGGCCCTGCCAGAAGTACACGACGCACTGGAAGTCCTCC TCCGGCTGCTTCGCCGCCGCCGCCTCGCCGTCCTCGCCCTCGGCCCCGGCCTTCTCGTCC TCGTTCTCCTCTTTCCTCTCCTCCTCCTCCTCGTACTCCACGGGGACCCAGTACCTGCAG AGGAAGACGTAGCAGTCCTGCGTGTAGAAGTGGCCGAACTCCTCCTCGGGCAGCCGGGCG AACTTCTTGCCCTCGAGCACGAAGCCCTCCATGCCGTCGAGGTCCTCGTTCCACTCCTCC ATCAGCTGCTCGGCCTCGGCCAGAGCCATGGGCGGCTGCCGCGGCAGGAAGAGCGCCGTG AGGTCGGCCTTCATCTGGTCTTTCTTCTCGGCGTCGCGCTTCACCTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTAATATGGAAAATAAAAGCATTTAATATCTCTTAAAGGGAGATTACACT GCTTGATCCCGGGCAGAGAGCTCACACTGCAGACCCGGGCCGACCCGCCTACGCCTCCGC GGCCGCAGGGCCCTGACCGGCCGGCCCTTCCTCTCCCTCCGCGGAGGGTGGGGTCTCGAT GGGGGAAGCGGGCGGCCCCCCTAGGCCAGGGCCTTGCGGAAGGTGCTCCAGGCGTGGAAG CAGCGGGTGAAGGCGTGCTGCTCGTTGCCCTTGCGCACGAGGCGCAGGCGGCGGGGACGC TCGTGCTCCTTGGAGCGCAGGTGCTGGATGTACACCTGGCAGGCCTTCAGACTCAGCTTG ATCTCCACCTGGCTCGTCTGGGTCCCCACCCACATGTAGACCTCTTGGCCGTTGTCTAAG AGCATGATGTCATCATCCGCCAGGTCATCCTGGCAAAAGTCTGAGCACTTCTCCGTCACC GCGAAGTAGCCCTTCTCGTTGGAGCACCGGAAGAGCCGCGTGTGCTTCATGTACTCTGCG TCGTCGTCGTAGGGCTTCTGTGCCCCGATGCCCACCCAGAAGAAGTTCTCCGGCTCCTCG CCCTCGTTGATGACCTGCTTGCTGTAGGAGGCCTCGAACATGCTGTTGAGAATGTCCTCG GCCAGCTTGGCCTCGTCCGGGTCTGACGCCCGGCCCACCCAGGCGTACACGATGCCCTGG TTGTCCTCGCTCTCGAAGGGAACCTTGAGGATGAAGCAGAACTCGGAGTTGAGGAGGCCG GAGTCGGTGTTGATCTGGATGCACCTGGTGCAGAGGGCGCTGCCGTTGGTGCGGATCTGG TACAGGCTGGGCTGCGGGGCGCCCTGGGCCGCCCTCCTCCGGCCCCGGTGGATGACGAAC TTCCTCTTGAAGTGGGACAGGAACTTGGGGTTCTCCTGCTGCTGCGTCATGCGCACCACC TCCAGCTTGCCGGGGAAGAGACTCTCGAACTTCTTCTGCAGGCTGAAGGTGAAGGTGAGC CAGCCCATGGTGGAGGCTTCGCGGCCCTGCCAGAAGTACACGACGCACTGGAAGTCCTCC TCCGGCTGCTTCGCCGCCGCCGCCTCGCCGTCCTCGCCCTCGGCCCCGGCCTTCTCGTCC TCGTTCTCCTCTTTCCTCTCCTCCTCCTCCTCGTACTCCACGGGGACCCAGTACCTGCAG AGGAAGACGTAGCAGTCCTGCGTGTAGAAGTGGCCGAACTCCTCCTCGGGCAGCCGGGCG AACTTCTTGCCCTCGAGCACGAAGCCCTCCATGCCGTCGAGGTCCTCGTTCCACTCCTCC ATCAGCTGCTCGGCCTCGGCCAGAGCCATGGGCGGCTGCCGCGGCAGGAAGAGCGCCGTG AGGTCGGCCTTCATCTGGTCTTTCTTCTCGGCGTCGCGCTTCACCTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 225-344, + strand, RNAz p=0.643569 | |
| 957-1075, - strand, RNAz p=0.860279 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 225-344, + strand, RNAz p=0.643569 | |
| 957-1075, - strand, RNAz p=0.860279 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 175-344, gnl|bosTau2|chr19 (26614774-26614943) | |
| 175-344, gnl|Hg17|chr17 (18089143-18089320) | |
| 175-344, gnl|Mm7|chr11 (60795841-60796015) | |
| 400-506, gnl|bosTau2|chr19 (26615189-26615295) | |
| 400-506, gnl|canFam2|chr5 (44313636-44313479) | |
| 400-506, gnl|danRer3|chr3 (37665415-37665238) | |
| 400-506, gnl|echTel1|scaffold_311490 (7333-7197) | |
| 400-506, gnl|fr1|chrUn (188320497-188320666) | |
| 400-506, gnl|hg17|chr17 (18089513-18089702) | |
| 400-506, gnl|Hg17|chr17 (18089592-18089698) | |
| 400-506, gnl|mm7|chr11 (60796510-60796697) | |
| 400-506, gnl|Mm7|chr11 (60796587-60796693) | |
| 400-506, gnl|monDom2|scaffold_55 (12147816-12147654) | |
| 400-506, gnl|panTro1|chr19 (18496881-18497070) | |
| 400-506, gnl|rheMac2|chr16 (18170069-18170254) | |
| 400-506, gnl|rn3|chr10 (46874523-46874709) | |
| 400-506, gnl|tetNig1|chrUn_random (39292785-39292631) | |
| 400-506, gnl|xenTro1|scaffold_142 (1118907-1118741) | |
| 613-745, gnl|bosTau2|chr19 (26615622-26615754) | |
| 613-745, gnl|Hg17|chr17 (18089971-18090103) | |
| 613-745, gnl|Mm7|chr11 (60797017-60797149) | |
| 957-1199, gnl|bosTau2|chr19 (26616247-26616486) | |
| 957-1199, gnl|Hg17|chr17 (18090630-18090872) | |
| 957-1199, gnl|Mm7|chr11 (60797647-60797895) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 175-344, gnl|bosTau2|chr19 (26614774-26614943) | |
| 175-344, gnl|Hg17|chr17 (18089143-18089320) | |
| 175-344, gnl|Mm7|chr11 (60795841-60796015) | |
| 400-506, gnl|bosTau2|chr19 (26615189-26615295) | |
| 400-506, gnl|canFam2|chr5 (44313636-44313479) | |
| 400-506, gnl|danRer3|chr3 (37665415-37665238) | |
| 400-506, gnl|echTel1|scaffold_311490 (7333-7197) | |
| 400-506, gnl|fr1|chrUn (188320497-188320666) | |
| 400-506, gnl|hg17|chr17 (18089513-18089702) | |
| 400-506, gnl|Hg17|chr17 (18089592-18089698) | |
| 400-506, gnl|mm7|chr11 (60796510-60796697) | |
| 400-506, gnl|Mm7|chr11 (60796587-60796693) | |
| 400-506, gnl|monDom2|scaffold_55 (12147816-12147654) | |
| 400-506, gnl|panTro1|chr19 (18496881-18497070) | |
| 400-506, gnl|rheMac2|chr16 (18170069-18170254) | |
| 400-506, gnl|rn3|chr10 (46874523-46874709) | |
| 400-506, gnl|tetNig1|chrUn_random (39292785-39292631) | |
| 400-506, gnl|xenTro1|scaffold_142 (1118907-1118741) | |
| 613-745, gnl|bosTau2|chr19 (26615622-26615754) | |
| 613-745, gnl|Hg17|chr17 (18089971-18090103) | |
| 613-745, gnl|Mm7|chr11 (60797017-60797149) | |
| 957-1199, gnl|bosTau2|chr19 (26616247-26616486) | |
| 957-1199, gnl|Hg17|chr17 (18090630-18090872) | |
| 957-1199, gnl|Mm7|chr11 (60797647-60797895) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| clu (0.358938) | |
| cag (0.302389) | |
| jca (0.22792) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fli (0.202881) | |
| nep (0.183925) | |
| duo (0.172801) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cst (0.140036) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.358938) | |
| cag (0.302389) | |
| jca (0.22792) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fli (0.202881) | |
| nep (0.183925) | |
| duo (0.172801) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cst (0.140036) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| med (0.116252) |