Non-Coding RNA Search

Ss1.1-Pig4-TMW8031I23.5

Sequence:


               
               ACCATCTTCGCCAACCTCTTCCCGGCAGGTGAGCGACGCGGGCCGGGCGGGCGGCCGGGC
GGAGGTGCGGCCCCGCCTAACGGCCCCTGCCCCGCCGGTCCCAGCAGCCTACACCGGCGT
GCACGAGCGCACCTTCCTGGCGGTGAAGCCCGACGGCGTGCAGCGGCGGCTCGTGGGTGA
GATCGTGCGGCGCTTCGAGAGAAAGGGCTTCAAGCTGGTGGCGCTGAAGTTGGTGCAGGC
CTCCGAGGAGCTGCTGCGGGAGCACTACGCCGAGCTGCGGGAGCGCCCTTTCTATGGGCG
CCTGGTGAAGTACATGGGCTCGGGACCAGTGGTGGCCATGGTGTGGCAGGGTCTAGACGT
TGTTCGCGCTTCGCGGGCGCTCATCGGGGCCACGAACCCGGTCGATGCCACGCCCGGCAC
CATCCGCGGCGATTTCTGCATCGAGGTCGGCAAGAACGTGATTCACGGCAGCGACTCGGT
GGAGAGCGCCCGCCGCGAGATAGCGCTCTGGTTCCGTGCGGACGAGCTCCTGTGCTGGGA
AGACAGCGCCGGGCACTGGCTGTACGAGTAGCTACAGCTCCTCGCCTGGATCGGGTTGTG
GCTGCCTCTGCATTCTCTGGGCCCCACCCCGGGAGCTCAGAACCCCCTTCCTGCAGCAGG
GATCACAGCAGCCCCCAGCGCGACAGCAGGGCAGGGAGGTGCACACTGCCAGGCATGGCT
GGCGACCGCCTTCCTGCCCCAGATGAGGCACTCGGACCGGGCTCCAGCCTGCGCCCCAGT
TTATGGCGGGCCTGGGAAGCCAGTGGGGTGCTACTTTGGTCCTTGGCTCTCCCCAGCATT
TCTTTTTATAATAAACTGACGGAAACCTGTGCTCAAGTCTCTTGGGCCCAGGTACACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCATCTTCGCCAACCTCTTCCCGGCAGGTGAGCGACGCGGGCCGGGCGGGCGGCCGGGC
GGAGGTGCGGCCCCGCCTAACGGCCCCTGCCCCGCCGGTCCCAGCAGCCTACACCGGCGT
GCACGAGCGCACCTTCCTGGCGGTGAAGCCCGACGGCGTGCAGCGGCGGCTCGTGGGTGA
GATCGTGCGGCGCTTCGAGAGAAAGGGCTTCAAGCTGGTGGCGCTGAAGTTGGTGCAGGC
CTCCGAGGAGCTGCTGCGGGAGCACTACGCCGAGCTGCGGGAGCGCCCTTTCTATGGGCG
CCTGGTGAAGTACATGGGCTCGGGACCAGTGGTGGCCATGGTGTGGCAGGGTCTAGACGT
TGTTCGCGCTTCGCGGGCGCTCATCGGGGCCACGAACCCGGTCGATGCCACGCCCGGCAC
CATCCGCGGCGATTTCTGCATCGAGGTCGGCAAGAACGTGATTCACGGCAGCGACTCGGT
GGAGAGCGCCCGCCGCGAGATAGCGCTCTGGTTCCGTGCGGACGAGCTCCTGTGCTGGGA
AGACAGCGCCGGGCACTGGCTGTACGAGTAGCTACAGCTCCTCGCCTGGATCGGGTTGTG
GCTGCCTCTGCATTCTCTGGGCCCCACCCCGGGAGCTCAGAACCCCCTTCCTGCAGCAGG
GATCACAGCAGCCCCCAGCGCGACAGCAGGGCAGGGAGGTGCACACTGCCAGGCATGGCT
GGCGACCGCCTTCCTGCCCCAGATGAGGCACTCGGACCGGGCTCCAGCCTGCGCCCCAGT
TTATGGCGGGCCTGGGAAGCCAGTGGGGTGCTACTTTGGTCCTTGGCTCTCCCCAGCATT
TCTTTTTATAATAAACTGACGGAAACCTGTGCTCAAGTCTCTTGGGCCCAGGTACACAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6941068|emb|CAB72319.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6941068|emb|CAB72319.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               785-900, + strand, RNAz p=0.623125

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               785-900, + strand, RNAz p=0.623125

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002513, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002513, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               125-489, gnl|bosTau2|chr19 (27323224-27323588)
               

               
               125-489, gnl|Hg17|chr12 (119182793-119183157)
               

               
               125-489, gnl|Mm7|chr5 (148594365-148594001)
               


               
               728-900, gnl|bosTau2|chr25 (2854106-2854281)
               

               
               728-900, gnl|Hg17|chr16 (1760501-1760323)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               125-489, gnl|bosTau2|chr19 (27323224-27323588)
               

               
               125-489, gnl|Hg17|chr12 (119182793-119183157)
               

               
               125-489, gnl|Mm7|chr5 (148594365-148594001)
               


               
               728-900, gnl|bosTau2|chr25 (2854106-2854281)
               

               
               728-900, gnl|Hg17|chr16 (1760501-1760323)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               amn (0.417711)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               nbm (0.198649)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               nbm (0.198649)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	125-489, gnl\|bosTau2\|chr19 (27323224-27323588)
	125-489, gnl\|Hg17\|chr12 (119182793-119183157)
	125-489, gnl\|Mm7\|chr5 (148594365-148594001)

	728-900, gnl\|bosTau2\|chr25 (2854106-2854281)
	728-900, gnl\|Hg17\|chr16 (1760501-1760323)

	amn (0.417711)
	med (0.232504)
	jca (0.22792)
	nbm (0.198649)
	eje (0.197668)
	nlu (0.191681)
	nco (0.161734)
	hyp (0.142837)
	lnt (0.142308)
	hlv (0.139256)
	pla (0.133672)
	cov (0.132153)
	eru (0.120048)
	ebs (0.118301)
	ecc (0.115035)