Ss1.1-Pig4-TMW8031J06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGATAGAAATACACCAGTTTTTCGAGATGATGTTTGCTTTTTCATTAGTCAATCAGGT GAGACAGCAGATACCCTGATGGGTCTCCGGTACTGTAAGGAGAGAGGAGCTTTAACTGTG GGGATCACAAACACAGTCGGCAGTTCCATATCAAGAGAGACAGACTGTGGAGTTCACATC AATGCTGGGCCGGAGATTGGCGTGGCCAGCACAAAGGCATACACCAGCCAGTTTGTGTCC CTTGTGATGTTTGCCCTTATGATGTGTGATGACAGGATCTCCATGCAGGAGAGACGCAAA GAGATCATGCTTGGATTGAAGCGGCTGCCTGATTTGATTAAGGAAGTTTTGAGCATGGAT GATGAAATTCAAAAACTGGCAACAGAACTTTATCATCAGAAGTCGGTCTTGATAATGGGA CGTGGCTATCATTATGCTACTTGTCTTGAAGGGGCCCTGAAAATCAAAGAAATCACTTAC ATGCACTCTGAAGGTATCCTTGCTGGTGAGTTGAAGCACGGCCCCCTGGCTTTGGTGGAT AAGTTGATGCCCGTCATCATGATCATCATGAGAGATCACACCTACGCCAAGTGCCAGAAT GCTCTTCAGCAGGTGGTTGCTAGGCAGGGAAGGCCAGTGGTGATCTGTGATAAGGAAGAC ACTGAGACCATTAAGAACACCAAACGAACAATCAAGGTGCCCCACTCGGTGGACTGCCTG CAGGGCATTCTCAGCGTCATCCCGTTACAGTTGCTGGCCTTCCACCTGGCTGTGCTCAGA GGCTATGATGTTGATTTCCCCCGGAATCTTGCCAAATCGGTAACCGTAGAATAAGGAGCA TCTGAGATTGGGCGATTAAGCAACACAAGACACCTTTTGTATTTAAAACCTTGATTTAAA ATATCACCCCTCTAAGCCTTTTTTAAGTAAATCCTTATTTATATATCAGTAATAATTATT CCATTCAATTTGTGATTTTTGTGAAATTACCTCCTATTTTTCCAGTAAGTTGTGAGGGAG TTTAAATAATGCAATCTATATTGGTATTGGTATCAGAAAGAGATTTAGCTCTCATTTTCT TTAAACGATGCTGAGTATTGGATTTATGGGTCCTCTACTTGAATCTGAGAGGACTGTTGT GTTTTTAAAATAATTGGCATTTGTTTTAACATCTATTCATTCAGACCAATGAAGTGGTAG TTCATTTAATTGGAATATTTAAAGCCAGTGGCAATATACTCAGACATTCAATTAAGGTTT TGCTAAGTTATAAAAATAAGATGCTACGATTTTGAAAATTTTTGAAATTTGTTTGTGTTT TGATTTTAAATCAAACTGTAAGACTTAAAAACTAAAAACTCTTCTTGGTGGGATTTTGAA GTTAACCTTACTCTCTCAAATTTACTGCCTGTCATCTGGAGGTCAAGGTATCTTAGGAAG CTAAATAGTATGGTATTGCATTGGTTTTCTTGGGCCTTTAAAAAACAGAAAATATTTGTA CAGTTTCATAGCATAAACTTGAAATTTGAGCTGCTTTGGACAACTGACAGTATGATTTTA AATCTGAAGTTGGGATACATATGTATTAGATATTCTACTTCTTGTTTTTAAATCTCCTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGATAGAAATACACCAGTTTTTCGAGATGATGTTTGCTTTTTCATTAGTCAATCAGGT GAGACAGCAGATACCCTGATGGGTCTCCGGTACTGTAAGGAGAGAGGAGCTTTAACTGTG GGGATCACAAACACAGTCGGCAGTTCCATATCAAGAGAGACAGACTGTGGAGTTCACATC AATGCTGGGCCGGAGATTGGCGTGGCCAGCACAAAGGCATACACCAGCCAGTTTGTGTCC CTTGTGATGTTTGCCCTTATGATGTGTGATGACAGGATCTCCATGCAGGAGAGACGCAAA GAGATCATGCTTGGATTGAAGCGGCTGCCTGATTTGATTAAGGAAGTTTTGAGCATGGAT GATGAAATTCAAAAACTGGCAACAGAACTTTATCATCAGAAGTCGGTCTTGATAATGGGA CGTGGCTATCATTATGCTACTTGTCTTGAAGGGGCCCTGAAAATCAAAGAAATCACTTAC ATGCACTCTGAAGGTATCCTTGCTGGTGAGTTGAAGCACGGCCCCCTGGCTTTGGTGGAT AAGTTGATGCCCGTCATCATGATCATCATGAGAGATCACACCTACGCCAAGTGCCAGAAT GCTCTTCAGCAGGTGGTTGCTAGGCAGGGAAGGCCAGTGGTGATCTGTGATAAGGAAGAC ACTGAGACCATTAAGAACACCAAACGAACAATCAAGGTGCCCCACTCGGTGGACTGCCTG CAGGGCATTCTCAGCGTCATCCCGTTACAGTTGCTGGCCTTCCACCTGGCTGTGCTCAGA GGCTATGATGTTGATTTCCCCCGGAATCTTGCCAAATCGGTAACCGTAGAATAAGGAGCA TCTGAGATTGGGCGATTAAGCAACACAAGACACCTTTTGTATTTAAAACCTTGATTTAAA ATATCACCCCTCTAAGCCTTTTTTAAGTAAATCCTTATTTATATATCAGTAATAATTATT CCATTCAATTTGTGATTTTTGTGAAATTACCTCCTATTTTTCCAGTAAGTTGTGAGGGAG TTTAAATAATGCAATCTATATTGGTATTGGTATCAGAAAGAGATTTAGCTCTCATTTTCT TTAAACGATGCTGAGTATTGGATTTATGGGTCCTCTACTTGAATCTGAGAGGACTGTTGT GTTTTTAAAATAATTGGCATTTGTTTTAACATCTATTCATTCAGACCAATGAAGTGGTAG TTCATTTAATTGGAATATTTAAAGCCAGTGGCAATATACTCAGACATTCAATTAAGGTTT TGCTAAGTTATAAAAATAAGATGCTACGATTTTGAAAATTTTTGAAATTTGTTTGTGTTT TGATTTTAAATCAAACTGTAAGACTTAAAAACTAAAAACTCTTCTTGGTGGGATTTTGAA GTTAACCTTACTCTCTCAAATTTACTGCCTGTCATCTGGAGGTCAAGGTATCTTAGGAAG CTAAATAGTATGGTATTGCATTGGTTTTCTTGGGCCTTTAAAAAACAGAAAATATTTGTA CAGTTTCATAGCATAAACTTGAAATTTGAGCTGCTTTGGACAACTGACAGTATGATTTTA AATCTGAAGTTGGGATACATATGTATTAGATATTCTACTTCTTGTTTTTAAATCTCCTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 494-617, - strand, RNAz p=0.965085 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 494-617, - strand, RNAz p=0.965085 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 56-215, gnl|bosTau2|chr11 (48977747-48977906) | |
| 56-215, gnl|Hg17|chr2 (69476841-69476682) | |
| 56-215, gnl|Mm7|chr6 (87152166-87152325) | |
| 455-635, gnl|bosTau2|chr7 (3714639-3714458) | |
| 455-635, gnl|canFam2|chr11 (4416774-4416597) | |
| 455-635, gnl|danRer3|chr6 (31273028-31273202) | |
| 455-635, gnl|dasNov1|scaffold_20566 (745-568) | |
| 455-635, gnl|echTel1|scaffold_276420 (7763-7939) | |
| 455-635, gnl|fr1|chrUn (192633572-192633397) | |
| 455-635, gnl|galGal2|chr13_random (1047952-1047775) | |
| 455-635, gnl|hg17|chr5 (179664374-179664549) | |
| 455-635, gnl|Hg17|chr5 (179664548-179664369) | |
| 455-635, gnl|loxAfr1|scaffold_19581 (46816-46640) | |
| 455-635, gnl|mm7|chr11 (49789791-49789614) | |
| 455-635, gnl|Mm7|chr11 (49789613-49789794) | |
| 455-635, gnl|monDom2|scaffold_6 (15589971-15590151) | |
| 455-635, gnl|oryCun1|scaffold_174137 (12721-12898) | |
| 455-635, gnl|panTro1|chr4 (187214161-187214336) | |
| 455-635, gnl|rheMac2|chr6 (177001157-177001332) | |
| 455-635, gnl|rn3|chr10 (35331515-35331338) | |
| 455-635, gnl|tetNig1|chr1 (784767-784592) | |
| 455-635, gnl|xenTro1|scaffold_110 (1160674-1160849) | |
| 459-632, gnl|bosTau2|chr11 (48986515-48986688) | |
| 459-632, gnl|canFam2|chr10 (71230916-71231115) | |
| 459-632, gnl|danRer3|chr6 (31273023-31273233) | |
| 459-632, gnl|dasNov1|scaffold_31214 (9567-9368) | |
| 459-632, gnl|echTel1|scaffold_314148 (39892-39693) | |
| 459-632, gnl|fr1|chrUn (192633574-192633378) | |
| 459-632, gnl|galGal2|chr22 (129147-128951) | |
| 459-632, gnl|hg17|chr2 (69467048-69467247) | |
| 459-632, gnl|Hg17|chr2 (69467222-69467049) | |
| 459-632, gnl|loxAfr1|scaffold_19581 (46817-46631) | |
| 459-632, gnl|mm7|chr6 (87161565-87161367) | |
| 459-632, gnl|Mm7|chr6 (87161389-87161562) | |
| 459-632, gnl|monDom2|scaffold_1 (96030067-96030271) | |
| 459-632, gnl|oryCun1|scaffold_162212 (30020-30219) | |
| 459-632, gnl|panTro1|chr12 (71702179-71702378) | |
| 459-632, gnl|rheMac2|chr13 (69561954-69562153) | |
| 459-632, gnl|rn3|chr4 (121492731-121492528) | |
| 459-632, gnl|tetNig1|chr12 (581427-581240) | |
| 459-632, gnl|xenTro1|scaffold_110 (1160674-1160866) | |
| 790-1609, gnl|bosTau2|chr11 (48989323-48990120) | |
| 790-1609, gnl|Hg17|chr2 (69465016-69464195) | |
| 790-1609, gnl|Mm7|chr6 (87163200-87163948) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 56-215, gnl|bosTau2|chr11 (48977747-48977906) | |
| 56-215, gnl|Hg17|chr2 (69476841-69476682) | |
| 56-215, gnl|Mm7|chr6 (87152166-87152325) | |
| 455-635, gnl|bosTau2|chr7 (3714639-3714458) | |
| 455-635, gnl|canFam2|chr11 (4416774-4416597) | |
| 455-635, gnl|danRer3|chr6 (31273028-31273202) | |
| 455-635, gnl|dasNov1|scaffold_20566 (745-568) | |
| 455-635, gnl|echTel1|scaffold_276420 (7763-7939) | |
| 455-635, gnl|fr1|chrUn (192633572-192633397) | |
| 455-635, gnl|galGal2|chr13_random (1047952-1047775) | |
| 455-635, gnl|hg17|chr5 (179664374-179664549) | |
| 455-635, gnl|Hg17|chr5 (179664548-179664369) | |
| 455-635, gnl|loxAfr1|scaffold_19581 (46816-46640) | |
| 455-635, gnl|mm7|chr11 (49789791-49789614) | |
| 455-635, gnl|Mm7|chr11 (49789613-49789794) | |
| 455-635, gnl|monDom2|scaffold_6 (15589971-15590151) | |
| 455-635, gnl|oryCun1|scaffold_174137 (12721-12898) | |
| 455-635, gnl|panTro1|chr4 (187214161-187214336) | |
| 455-635, gnl|rheMac2|chr6 (177001157-177001332) | |
| 455-635, gnl|rn3|chr10 (35331515-35331338) | |
| 455-635, gnl|tetNig1|chr1 (784767-784592) | |
| 455-635, gnl|xenTro1|scaffold_110 (1160674-1160849) | |
| 459-632, gnl|bosTau2|chr11 (48986515-48986688) | |
| 459-632, gnl|canFam2|chr10 (71230916-71231115) | |
| 459-632, gnl|danRer3|chr6 (31273023-31273233) | |
| 459-632, gnl|dasNov1|scaffold_31214 (9567-9368) | |
| 459-632, gnl|echTel1|scaffold_314148 (39892-39693) | |
| 459-632, gnl|fr1|chrUn (192633574-192633378) | |
| 459-632, gnl|galGal2|chr22 (129147-128951) | |
| 459-632, gnl|hg17|chr2 (69467048-69467247) | |
| 459-632, gnl|Hg17|chr2 (69467222-69467049) | |
| 459-632, gnl|loxAfr1|scaffold_19581 (46817-46631) | |
| 459-632, gnl|mm7|chr6 (87161565-87161367) | |
| 459-632, gnl|Mm7|chr6 (87161389-87161562) | |
| 459-632, gnl|monDom2|scaffold_1 (96030067-96030271) | |
| 459-632, gnl|oryCun1|scaffold_162212 (30020-30219) | |
| 459-632, gnl|panTro1|chr12 (71702179-71702378) | |
| 459-632, gnl|rheMac2|chr13 (69561954-69562153) | |
| 459-632, gnl|rn3|chr4 (121492731-121492528) | |
| 459-632, gnl|tetNig1|chr12 (581427-581240) | |
| 459-632, gnl|xenTro1|scaffold_110 (1160674-1160866) | |
| 790-1609, gnl|bosTau2|chr11 (48989323-48990120) | |
| 790-1609, gnl|Hg17|chr2 (69465016-69464195) | |
| 790-1609, gnl|Mm7|chr6 (87163200-87163948) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| sin (0.174948) | |
| eli (0.151814) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| ova (0.129132) | |
| ret (0.128733) | |
| pgl (0.118483) | |
| ecc (0.115035) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.174948) | |
| eli (0.151814) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| ova (0.129132) | |
| ret (0.128733) | |
| pgl (0.118483) | |
| ecc (0.115035) |