Non-Coding RNA Search

Ss1.1-Pig4-TMW8031J09.5

Sequence:


               
               GATCTTAATAAGCTTTTTTGATGTTGAAAAAAAGTATTTTGCTGCACTTTGAGAAATTCC
GAATTCACACGGCATTGTTTCCTTAGGTCTTTGTTTACGACCAACCTTTTAGAACTCTCC
CTAGAAGCAGAATTTTTTCACCGGGGCAAATCCTAAGATGAGCATATTTACTCTTAGAGA
TTGGCTCGTATCTTCTGCCCTTGGCAGAATGTGCCAGTTTACTTTAGTACACATTTATTC
GTGCTTGAAATTGGGAGTCTGTTTTCATTTGCTCACCTGTTTGCCCTTCAGAATAACAGT
TCCAACCATGGAGTTGATCGGAAGCGCAGCTCTGGAGATTAGTCGTTTCTGATCTCGGAT
CCTGCGCGTCCTGGTCCTGCCCGCCCGCCCGCCTCGTGTGGCCTGCCTGCCTGCCTTGTC
ATGACAGGTTGAGTAGTATATGGGTTTTAATATAATATTTTTTAATCACTGCTTTTCTAT
ATAGTGCTTTCAAATAAAACCAAAGATTTTAAAATTCAGATTATCTTTTCCCTTTGCCAA
ATTATGGTAGAAGCATGTTAAATATTTCAGGCCATTGAACGATGCTGTTATGTTTTGATG
TATGCAAACATAGTTGGGGTTCAGTTGCAACATAAAAAACTATTCTCAGAAATGTTGAAC
TTGAAATGAAAACTTGGCACCAAATGTATTCAAGTAGAAACTTTAAAAAATAGTTTCTTC
CTCTTATTACCTGAACAATATATTTAAGAAAGTCTTCATAATTATGTATGTAAGAGTTTG
GATACCAAAGGGTTAAAAATACACGTTTTTCTTTTACTGAAGAAATTTTGATGTTTGTAA
TGTTTTGTCTGTACAAATGGTACAAATTAGTAATGTTTTTTTAATCTTTTTTTTTTTTTT
TAATGATTCCATGTATTTGCTTATTTCCATCTAGGAATAGTTACTAATGTATTTGAGATA
CAGCATACCAAATTTTAAAGTAACCAGAATCGTGAGTTAATGGTTTTCAGTCCATACTGT
TAAACTTTTGTTGAAATACTGACCTAATTAAATTGGCTTCATGCTACAAATGATCAGAGG
TACTTGAAAAGGCAGCGTTTTAGCGCAGTAGCTCTCGGTCAGGGTGGTCACATGACAGTG
GCTCACGCTCACTAAATGTGCTTCTGCACCTCATGTGTGTGTATGTATTTTAACCCAAAT
GTTGCCTGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCTTAATAAGCTTTTTTGATGTTGAAAAAAAGTATTTTGCTGCACTTTGAGAAATTCC
GAATTCACACGGCATTGTTTCCTTAGGTCTTTGTTTACGACCAACCTTTTAGAACTCTCC
CTAGAAGCAGAATTTTTTCACCGGGGCAAATCCTAAGATGAGCATATTTACTCTTAGAGA
TTGGCTCGTATCTTCTGCCCTTGGCAGAATGTGCCAGTTTACTTTAGTACACATTTATTC
GTGCTTGAAATTGGGAGTCTGTTTTCATTTGCTCACCTGTTTGCCCTTCAGAATAACAGT
TCCAACCATGGAGTTGATCGGAAGCGCAGCTCTGGAGATTAGTCGTTTCTGATCTCGGAT
CCTGCGCGTCCTGGTCCTGCCCGCCCGCCCGCCTCGTGTGGCCTGCCTGCCTGCCTTGTC
ATGACAGGTTGAGTAGTATATGGGTTTTAATATAATATTTTTTAATCACTGCTTTTCTAT
ATAGTGCTTTCAAATAAAACCAAAGATTTTAAAATTCAGATTATCTTTTCCCTTTGCCAA
ATTATGGTAGAAGCATGTTAAATATTTCAGGCCATTGAACGATGCTGTTATGTTTTGATG
TATGCAAACATAGTTGGGGTTCAGTTGCAACATAAAAAACTATTCTCAGAAATGTTGAAC
TTGAAATGAAAACTTGGCACCAAATGTATTCAAGTAGAAACTTTAAAAAATAGTTTCTTC
CTCTTATTACCTGAACAATATATTTAAGAAAGTCTTCATAATTATGTATGTAAGAGTTTG
GATACCAAAGGGTTAAAAATACACGTTTTTCTTTTACTGAAGAAATTTTGATGTTTGTAA
TGTTTTGTCTGTACAAATGGTACAAATTAGTAATGTTTTTTTAATCTTTTTTTTTTTTTT
TAATGATTCCATGTATTTGCTTATTTCCATCTAGGAATAGTTACTAATGTATTTGAGATA
CAGCATACCAAATTTTAAAGTAACCAGAATCGTGAGTTAATGGTTTTCAGTCCATACTGT
TAAACTTTTGTTGAAATACTGACCTAATTAAATTGGCTTCATGCTACAAATGATCAGAGG
TACTTGAAAAGGCAGCGTTTTAGCGCAGTAGCTCTCGGTCAGGGTGGTCACATGACAGTG
GCTCACGCTCACTAAATGTGCTTCTGCACCTCATGTGTGTGTATGTATTTTAACCCAAAT
GTTGCCTGCAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               657-775, - strand, RNAz p=0.938758

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               657-775, - strand, RNAz p=0.938758

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-324, gnl|bosTau2|chr12 (45969022-45968683)
               

               
               3-324, gnl|Hg17|chr13 (110352835-110352359)
               

               
               3-324, gnl|Mm7|chr8 (11593169-11592881)
               


               
               415-1212, gnl|bosTau2|chr12 (45968492-45967707)
               

               
               415-1212, gnl|Hg17|chr13 (110351955-110351151)
               

               
               415-1212, gnl|Mm7|chr8 (11592693-11591973)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-324, gnl|bosTau2|chr12 (45969022-45968683)
               

               
               3-324, gnl|Hg17|chr13 (110352835-110352359)
               

               
               3-324, gnl|Mm7|chr8 (11593169-11592881)
               


               
               415-1212, gnl|bosTau2|chr12 (45968492-45967707)
               

               
               415-1212, gnl|Hg17|chr13 (110351955-110351151)
               

               
               415-1212, gnl|Mm7|chr8 (11592693-11591973)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.229595)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)

	3-324, gnl\|bosTau2\|chr12 (45969022-45968683)
	3-324, gnl\|Hg17\|chr13 (110352835-110352359)
	3-324, gnl\|Mm7\|chr8 (11593169-11592881)

	415-1212, gnl\|bosTau2\|chr12 (45968492-45967707)
	415-1212, gnl\|Hg17\|chr13 (110351955-110351151)
	415-1212, gnl\|Mm7\|chr8 (11592693-11591973)